CmaCh05G001340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G001340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GATA type zinc finger transcription factor family protein
Location	Cma_Chr05: 589948 .. 591276 (-)
RNA-Seq Expression	CmaCh05G001340
Synteny	CmaCh05G001340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTACAGGTTGAGACATTTTATCAAAGAAACGAGTTGTTGGGTCTGCTCCAAAGATCCAACGGAATGATTGTTTGCTTCCCCACTGACATCAATCATATCTATATAATCCTCTCCTTCTGCTTCATCTCCCCACTCTTCTAAACAAAGCTCACTTCCACTCCCAACCCATGGCATTTGCAGGCACAACCCAGAAATGTATGGCTTGCGAAAAAACCGTTTATCTTGTCGACAAGCTGACCGCCGACAACCGCATCTACCACAAAGCCTGTTTCAGATGCCACCATTGCAAAGGAACTCTAAAGGTAAAACTTTTATCCTATGTTTAACGAAGGAGATGGAACTCGGAAACTGAAGTTGTTGCTCTGTTTTCAGCTCAGCAACTACAATTCCTTTGAGGGAGTGCTTTATTGCAGGCCACACTTTGATCAGCTCTTTAAGAGGACTGGCAGTCTTGACAAAAGCTTTGAAGGTACAAATTATAAGTTGTTTGGATGGATCTGATTTCTCGGACTTTTCATGTTAATTTCTGTGTTTTTAGGAACACCCAAGATCGTAAAACCAGAGAAACCGGTTGATAGTGAGGTAATTCCCTGATTGCTTGAGCCTGTTAGAATTTCTAATATTTCTCCCTTTGATCTGAAAATGCATCAGCAGAAACCAACGGCTAAGAAGGTAGCTAGCATGTTTGGCGGAACCAGAGATAAATGTCTTGGCTGTAATAACACTGTTTATCCAACAGAAAAGGTAACAACTATATACAGAATCTTTTTTGTTCTTCCTGGATCTAATTTCATGAACTGGTCTCTGTTTGAAGGTCACTGTAAATGGAACTCCATACCACAAAAGTTGCTTCAAATGCTGCCATGGCGGATGCACGATCAGCCCTTCCAACTATATCGCTCATGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTCATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAGGGAGACCATGAAAAGATACCATCGAAGGAAAAAATCAATGGCGAAGCGGTGGCTTCAGAAGCTTGATTGTGGATGCTCCTTTTAAGAGTGTGTTCTTCGCCCGCTGTTTCTTAAATATTCAAATAACATGCTCAAACAGACGCCAAGATCTGTTTGATTTTCATCATATTTCATGTTTGTGGATTTGAATCGTGGTCCTGTCAATTCCAAGGGATGCCTATAATTATAAGTACTTTCTTTTAAGGTTTATATTCTAAATTGGGTTCAAACCAACATAACAAGATTGAATGAAGATTATGGTTGGCCAAAGAACTCATCAAATGAAATGAAGAATCAACAAACAAGTTATT

mRNA sequence

CAGCTACAGGTTGAGACATTTTATCAAAGAAACGAGTTGTTGGGTCTGCTCCAAAGATCCAACGGAATGATTGTTTGCTTCCCCACTGACATCAATCATATCTATATAATCCTCTCCTTCTGCTTCATCTCCCCACTCTTCTAAACAAAGCTCACTTCCACTCCCAACCCATGGCATTTGCAGGCACAACCCAGAAATGTATGGCTTGCGAAAAAACCGTTTATCTTGTCGACAAGCTGACCGCCGACAACCGCATCTACCACAAAGCCTGTTTCAGATGCCACCATTGCAAAGGAACTCTAAAGCTCAGCAACTACAATTCCTTTGAGGGAGTGCTTTATTGCAGGCCACACTTTGATCAGCTCTTTAAGAGGACTGGCAGTCTTGACAAAAGCTTTGAAGGAACACCCAAGATCGTAAAACCAGAGAAACCGGTTGATAGTGAGAAACCAACGGCTAAGAAGGTAGCTAGCATGTTTGGCGGAACCAGAGATAAATGTCTTGGCTGTAATAACACTGTTTATCCAACAGAAAAGGTCACTGTAAATGGAACTCCATACCACAAAAGTTGCTTCAAATGCTGCCATGGCGGATGCACGATCAGCCCTTCCAACTATATCGCTCATGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTCATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAGGGAGACCATGAAAAGATACCATCGAAGGAAAAAATCAATGGCGAAGCGGTGGCTTCAGAAGCTTGATTGTGGATGCTCCTTTTAAGAGTGTGTTCTTCGCCCGCTGTTTCTTAAATATTCAAATAACATGCTCAAACAGACGCCAAGATCTGTTTGATTTTCATCATATTTCATGTTTGTGGATTTGAATCGTGGTCCTGTCAATTCCAAGGGATGCCTATAATTATAAGTACTTTCTTTTAAGGTTTATATTCTAAATTGGGTTCAAACCAACATAACAAGATTGAATGAAGATTATGGTTGGCCAAAGAACTCATCAAATGAAATGAAGAATCAACAAACAAGTTATT

Coding sequence (CDS)

ATGGCATTTGCAGGCACAACCCAGAAATGTATGGCTTGCGAAAAAACCGTTTATCTTGTCGACAAGCTGACCGCCGACAACCGCATCTACCACAAAGCCTGTTTCAGATGCCACCATTGCAAAGGAACTCTAAAGCTCAGCAACTACAATTCCTTTGAGGGAGTGCTTTATTGCAGGCCACACTTTGATCAGCTCTTTAAGAGGACTGGCAGTCTTGACAAAAGCTTTGAAGGAACACCCAAGATCGTAAAACCAGAGAAACCGGTTGATAGTGAGAAACCAACGGCTAAGAAGGTAGCTAGCATGTTTGGCGGAACCAGAGATAAATGTCTTGGCTGTAATAACACTGTTTATCCAACAGAAAAGGTCACTGTAAATGGAACTCCATACCACAAAAGTTGCTTCAAATGCTGCCATGGCGGATGCACGATCAGCCCTTCCAACTATATCGCTCATGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTCATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAGGGAGACCATGAAAAGATACCATCGAAGGAAAAAATCAATGGCGAAGCGGTGGCTTCAGAAGCTTGA

Protein sequence

MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHEKIPSKEKINGEAVASEA

Homology

[Close]

BLAST of CmaCh05G001340 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-93
Identity = 155/188 (82.45%), Postives = 173/188 (92.02%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMAC+KTVYLVDKLTADNR+YHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKI KP++P++ E+P   KV++MFGGTR+KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKV+VNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHHIQLIKEKGNLSQLEG  E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 181 KIPSKEKI 189
              +K+K+
Sbjct: 181 N-AAKDKV 187

[Close]

BLAST of CmaCh05G001340 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.3e-77
Identity = 128/175 (73.14%), Postives = 146/175 (83.43%), Query Frame = 0


Query: 2   AFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  CEKTVYLVDKL A+ R+YHKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPTE 121
           FDQLFKRTGSL+KSF+GTPK  KPE+    E  +A +++S F GTRDKC  C   VYP E
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIE 122

Query: 122 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLE 177
           +V V+GT YH++CFKCCHGGCTISPSNYIAHEGRLYCKHHHIQL K+KGN SQLE
Sbjct: 123 RVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of CmaCh05G001340 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.3e-60
Identity = 107/175 (61.14%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120
           HF+QLFK +GS  K+F+   K +  +KP      T  ++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CmaCh05G001340 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.8e-58
Identity = 105/179 (58.66%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKP----TAKKVASMFGGTRDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K  D   P    T  +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           VYP EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmaCh05G001340 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.4e-53
Identity = 93/175 (53.14%), Postives = 121/175 (69.14%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC AC+KTVY++D LT +   YHK+CFRC HCKGTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120
           HF+QLFK +G+  K+F+      K EKP D    T  K++S F GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGNYSKNFQAG----KTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPL 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVT+ G  YHK+CF+C H GC ++ S+Y +  G LYCK H  QL  EKG+ + +
Sbjct: 121 EKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]

BLAST of CmaCh05G001340 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 344.0 bits (881), Expect = 8.1e-95
Identity = 155/188 (82.45%), Postives = 173/188 (92.02%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMAC+KTVYLVDKLTADNR+YHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKI KP++P++ E+P   KV++MFGGTR+KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKV+VNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHHIQLIKEKGNLSQLEG  E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 181 KIPSKEKI 189
              +K+K+
Sbjct: 181 N-AAKDKV 187

[Close]

BLAST of CmaCh05G001340 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 231.9 bits (590), Expect = 4.5e-61
Identity = 107/175 (61.14%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120
           HF+QLFK +GS  K+F+   K +  +KP      T  ++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CmaCh05G001340 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 224.9 bits (572), Expect = 5.5e-59
Identity = 105/179 (58.66%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKP----TAKKVASMFGGTRDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K  D   P    T  +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           VYP EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmaCh05G001340 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 224.9 bits (572), Expect = 5.5e-59
Identity = 105/179 (58.66%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKP----TAKKVASMFGGTRDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K  D   P    T  +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           VYP EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmaCh05G001340 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 224.9 bits (572), Expect = 5.5e-59
Identity = 105/179 (58.66%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKP----TAKKVASMFGGTRDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K  D   P    T  +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           VYP EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:

BLAST of CmaCh05G001340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	1.1e-93	82.45	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	3.3e-77	73.14	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	6.3e-60	61.14	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	7.8e-58	58.66	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O80839	4.4e-53	53.14	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]

BLAST of CmaCh05G001340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	8.1e-95	82.45	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	4.5e-61	61.14	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	5.5e-59	58.66	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	5.5e-59	58.66	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	5.5e-59	58.66	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 5.2E-10 score: 49.3 coord: 109..161 e-value: 2.2E-12 score: 57.1
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 110..164 e-value: 5.6E-12 score: 45.7 coord: 10..64 e-value: 9.6E-10 score: 38.5
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.107699
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 108..168 score: 12.3553
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 1.9E-19 score: 71.6 coord: 105..174 e-value: 4.3E-18 score: 67.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..197
None	No IPR available	PANTHER	PTHR24206:SF77	LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE	coord: 1..184
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..184
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 2.96216E-40 score: 129.507
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 110..170 e-value: 1.05849E-37 score: 122.964
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 136..175
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 102..135
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001340.1	CmaCh05G001340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding