CmaCh04G020260 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Gag/pol protein
Location	Cma_Chr04: 12854914 .. 12856412 (+)
RNA-Seq Expression	CmaCh04G020260
Synteny	CmaCh04G020260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTAGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAAACCATTAAAGCTCGTCTTGTAGAAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTTCTGTTGCTATGCTTAAATTGATTAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGATAAGACAGTCTTTCTAAACGGAAATCTTGAAGAGAGTATATATATGGCTCTACCAAATGGGTTCATTGAACAGGATCACAAACATAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACCGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATTGTCAACTAGCTTTCCTAGTGTTGTACGTTGACGATATTCTACTCATTGGGAATGATGTGGGACTTCTAACTGACATTAAGCATTGGCTAGCAACATAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCCAAATTGTTCGGAATCGTAAGAACAAAACACTAGCATTGTCTCAGGCATCGTATATCGACAAAATGTTGATTCGATATAAGATGTAGAACTCCAAGAAAAGATTATTATCTTTCAGGCATGGAGTTCATTTGTTGAAGGAACAAAGTCCTAAGACACCTTAAGAAATTGAGAATATGAGACACATTCCCTATGCATCAGCAGTCGGTAGTTTGATGTATGCCATGCTATGTACCCAACCTGGCATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCATGACGTGCTCATTGGACTGCCGTTAAGAATATAATCAAGTATCTTAGGACACCGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACACGGTACACTAACTCAGATTTTTAGACTGATGTAGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTTTGAACGAAGGAGCAATAATATGGCGAAGCATAAAGCAAGGTTGCATTTCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGAAAGTTCTTAACTGATTTGGAAGTCATTCCAAATATGCATCTTCTCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTACAAATTCGAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGAAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGTTTTGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

mRNA sequence

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTAGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTTTGAACGAAGGAGCAATAATATGGCGAAGCATAAAGCAAGGTTGCATTTCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGAAAGTTCTTAACTGATTTGGAAGTCATTCCAAATATGCATCTTCTCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTACAAATTCGAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGAAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGTTTTGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

Coding sequence (CDS)

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTAGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTTTGAACGAAGGAGCAATAATATGGCGAAGCATAAAGCAAGGTTGCATTTCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGAAAGTTCTTAACTGATTTGGAAGTCATTCCAAATATGCATCTTCTCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTACAAATTCGAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGAAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGTTTTGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

Protein sequence

MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRDQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

Homology

[Close]

BLAST of CmaCh04G020260 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.7e-22
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 40   DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
            D+RKS++G +FT + GAI W+S  Q C++ ST EAEY+AA E  KE +WL++FL +L + 
Sbjct: 1188 DNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH 1247

Query: 100  PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
               ++   +YCD+  A+  SK    H R KHI+ +YH IRE+V    + V +I    N A
Sbjct: 1248 QKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPA 1307

Query: 160  DPFTKPLTAKVFE 173
            D  TK +    FE
Sbjct: 1308 DMLTKVVPRNKFE 1317

HSP 2 Score: 45.1 bits (105), Expect = 1.0e-03
Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD 38
           M  EMES+  N  ++LV+ P G +P+ CKW++K K+D
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKD 866

[Close]

BLAST of CmaCh04G020260 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 7.8e-20
Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 0


Query: 42   RKSTSGSVFTLNE-GAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIP 101
            RKST+G +F + +   I W + +Q  ++ S+ EAEY+A  EA +E++WL+  LT + +  
Sbjct: 1263 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI-- 1322

Query: 102  NMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIAD 161
             +   + +Y DN G ++ +  P  HKR KHI+ KYH  RE VQ   + +  I  E+ +AD
Sbjct: 1323 KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLAD 1382

Query: 162  PFTKPLTAKVFEGHLVSLGL 181
             FTKPL A  F      LGL
Sbjct: 1383 IFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of CmaCh04G020260 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-07
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWL 90
           +SR+STSG +F LN G + WRS KQ  ++ S+ E EY+A  EA +E+VWL
Sbjct: 84  ESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of CmaCh04G020260 vs. ExPASy TrEMBL
Match: A0A5D3BE74 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00490 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 9.1e-72
Identity = 153/276 (55.43%), Postives = 164/276 (59.42%), Query Frame = 0


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR------------------------ 60
           MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                        
Sbjct: 502 MNLELESMYFNSVWDLVDQLDGVKPIGCKWSYKRKRGADGKIQTFKAILMAKGYTQVEGV 561

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 562 DYEETFSPVAMHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMRTRDYMLVYGSKDLIL 621

Query: 121 ---------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESV 180
                       DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+V
Sbjct: 622 TRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYLAACEAAKEAV 681

Query: 181 WLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDV 184
           WLRKFL DLEV+PNM   +TLYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDV
Sbjct: 682 WLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYHLIREIEHRGDV 741

[Close]

BLAST of CmaCh04G020260 vs. ExPASy TrEMBL
Match: A0A5A7VB15 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00160 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 9.1e-72
Identity = 153/276 (55.43%), Postives = 164/276 (59.42%), Query Frame = 0


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR------------------------ 60
           MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                        
Sbjct: 281 MNLELESMYFNSVWDLVDQLDGVKPIGCKWSYKRKRGADGKIQTFKAILMAKGYTQVEGV 340

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 341 DYEETFSPVAMHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMRTRDYMLVYGSKDLIL 400

Query: 121 ---------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESV 180
                       DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+V
Sbjct: 401 TRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYLAACEAAKEAV 460

Query: 181 WLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDV 184
           WLRKFL DLEV+PNM   +TLYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDV
Sbjct: 461 WLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYHLIREIEHRGDV 520

[Close]

BLAST of CmaCh04G020260 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.5e-66
Identity = 128/144 (88.89%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTSGSVFTLNEGA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+
Sbjct: 250 DSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVV 309

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIA
Sbjct: 310 PNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIA 369

Query: 160 DPFTKPLTAKVFEGHLVSLGLRVM 184
           DPFTK LTAKVFEGHL SLGLR M
Sbjct: 370 DPFTKILTAKVFEGHLESLGLRDM 393

[Close]

BLAST of CmaCh04G020260 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.7e-66
Identity = 127/144 (88.19%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 40   DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
            DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+
Sbjct: 1089 DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVV 1148

Query: 100  PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
            PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIA
Sbjct: 1149 PNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIA 1208

Query: 160  DPFTKPLTAKVFEGHLVSLGLRVM 184
            DPFTK LTAKVFEGHL SLGLR M
Sbjct: 1209 DPFTKTLTAKVFEGHLESLGLRDM 1232

[Close]

BLAST of CmaCh04G020260 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD 38
           M+LEMESMYFNSVWELVD P+GVKPI CKWIYKRKRD
Sbjct: 732 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRD 768

HSP 2 Score: 260.4 bits (664), Expect = 5.7e-66
Identity = 127/144 (88.19%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 40   DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
            DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+
Sbjct: 963  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVV 1022

Query: 100  PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
            PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIA
Sbjct: 1023 PNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIA 1082

Query: 160  DPFTKPLTAKVFEGHLVSLGLRVM 184
            DPFTK LTAKVFEGHL SLGLR M
Sbjct: 1083 DPFTKTLTAKVFEGHLESLGLRDM 1106

[Close]

BLAST of CmaCh04G020260 vs. NCBI nr
Match: KAA0062799.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-71
Identity = 153/276 (55.43%), Postives = 164/276 (59.42%), Query Frame = 0


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR------------------------ 60
           MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                        
Sbjct: 281 MNLELESMYFNSVWDLVDQLDGVKPIGCKWSYKRKRGADGKIQTFKAILMAKGYTQVEGV 340

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 341 DYEETFSPVAMHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMRTRDYMLVYGSKDLIL 400

Query: 121 ---------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESV 180
                       DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+V
Sbjct: 401 TRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYLAACEAAKEAV 460

Query: 181 WLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDV 184
           WLRKFL DLEV+PNM   +TLYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDV
Sbjct: 461 WLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYHLIREIEHRGDV 520

[Close]

BLAST of CmaCh04G020260 vs. NCBI nr
Match: TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-71
Identity = 153/276 (55.43%), Postives = 164/276 (59.42%), Query Frame = 0


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR------------------------ 60
           MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                        
Sbjct: 502 MNLELESMYFNSVWDLVDQLDGVKPIGCKWSYKRKRGADGKIQTFKAILMAKGYTQVEGV 561

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 562 DYEETFSPVAMHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMRTRDYMLVYGSKDLIL 621

Query: 121 ---------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESV 180
                       DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+V
Sbjct: 622 TRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYLAACEAAKEAV 681

Query: 181 WLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDV 184
           WLRKFL DLEV+PNM   +TLYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDV
Sbjct: 682 WLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYHLIREIEHRGDV 741

[Close]

BLAST of CmaCh04G020260 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 3.1e-66
Identity = 128/144 (88.89%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTSGSVFTLNEGA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+
Sbjct: 250 DSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVV 309

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIA
Sbjct: 310 PNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIA 369

Query: 160 DPFTKPLTAKVFEGHLVSLGLRVM 184
           DPFTK LTAKVFEGHL SLGLR M
Sbjct: 370 DPFTKILTAKVFEGHLESLGLRDM 393

[Close]

BLAST of CmaCh04G020260 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 127/144 (88.19%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+
Sbjct: 154 DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVV 213

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIA
Sbjct: 214 PNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIA 273

Query: 160 DPFTKPLTAKVFEGHLVSLGLRVM 184
           DPFTK LTAKVFEGHL SLGLR M
Sbjct: 274 DPFTKTLTAKVFEGHLESLGLRDM 297

[Close]

BLAST of CmaCh04G020260 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 127/144 (88.19%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 40   DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
            DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+
Sbjct: 1089 DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVV 1148

Query: 100  PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
            PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIA
Sbjct: 1149 PNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIA 1208

Query: 160  DPFTKPLTAKVFEGHLVSLGLRVM 184
            DPFTK LTAKVFEGHL SLGLR M
Sbjct: 1209 DPFTKTLTAKVFEGHLESLGLRDM 1232

[Close]

BLAST of CmaCh04G020260 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           D+R+ST+G    L    I W+S KQ  +S S+ EAEY A   A  E +WL +F  +L++ 
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIRE 141
            +   L  L+CDN+ A+  +     H+R KHIE   H +RE
Sbjct: 515 LSKPTL--LFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of CmaCh04G020260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.7e-22	42.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.8e-20	38.57	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	7.6e-07	52.00	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of CmaCh04G020260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE74	9.1e-72	55.43	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G0049...	[more]
A0A5A7VB15	9.1e-72	55.43	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G0016...	[more]
A0A5A7V1F5	1.5e-66	88.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5A7TZD0	5.7e-66	88.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7TZD0	1.2e-10	89.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]

Pages

BLAST of CmaCh04G020260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062799.1	1.9e-71	55.43	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ96755.1	1.9e-71	55.43	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	3.1e-66	88.89	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	1.2e-65	88.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.2e-65	88.19	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]

Pages

BLAST of CmaCh04G020260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.1e-12	38.61	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 48..143
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 48..143
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 37..169 e-value: 6.40369E-59 score: 178.816

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020260.1	CmaCh04G020260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding