CmaCh04G019590 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATATTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATGTGACAAGCCAGGGACCTGAAAGAATCACTAACGAAATCCCACATCTAGAAAGAAGCCCGCTTACTCCGGAATTGAGACAAAAATGAATGGAAGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCAGCGAATGCCCCCGAAGATAGATTATTATGA ATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATATTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATAAAGAAGCCCGCTTACTCCGGAATTGAGACAAAAATGAATGGAAGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCAGCGAATGCCCCCGAAGATAGATTATTATGA ATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATATTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATAAAGAAGCCCGCTTACTCCGGAATTGAGACAAAAATGAATGGAAGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCAGCGAATGCCCCCGAAGATAGATTATTATGA MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIETKMNGRNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL Homology
BLAST of CmaCh04G019590 vs. ExPASy Swiss-Prot
Match: P08036 (DNA-directed RNA polymerase subunit beta (Fragment) OS=Saponaria officinalis OX=3572 GN=rpoB PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.7e-18 Identity = 58/101 (57.43%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy Swiss-Prot
Match: Q9BBS9 (DNA-directed RNA polymerase subunit beta OS=Lotus japonicus OX=34305 GN=rpoB PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 7.8e-18 Identity = 54/100 (54.00%), Postives = 61/100 (61.00%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy Swiss-Prot
Match: Q589C0 (DNA-directed RNA polymerase subunit beta OS=Silene latifolia OX=37657 GN=rpoB PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.7e-17 Identity = 57/101 (56.44%), Postives = 62/101 (61.39%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy Swiss-Prot
Match: P11703 (DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea OX=3562 GN=rpoB PE=3 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.3e-17 Identity = 57/101 (56.44%), Postives = 62/101 (61.39%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy Swiss-Prot
Match: Q09X25 (DNA-directed RNA polymerase subunit beta OS=Morus indica OX=248361 GN=rpoB PE=3 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 3.0e-17 Identity = 58/105 (55.24%), Postives = 63/105 (60.00%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy TrEMBL
Match: A0A7D5BAU8 (DNA-directed RNA polymerase subunit beta OS=Bauhinia blakeana OX=180222 GN=rpoB PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 9.9e-16 Identity = 57/105 (54.29%), Postives = 63/105 (60.00%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy TrEMBL
Match: A0A4P8J8Q6 (DNA-directed RNA polymerase subunit beta OS=Psammosilene tunicoides OX=39860 GN=rpoB PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15 Identity = 57/101 (56.44%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy TrEMBL
Match: A0A4Y5RB85 (DNA-directed RNA polymerase subunit beta OS=Heptacodium miconioides OX=137004 GN=rpoB PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15 Identity = 57/100 (57.00%), Postives = 60/100 (60.00%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy TrEMBL
Match: A0A6M4SQP9 (DNA-directed RNA polymerase subunit beta OS=Indofevillea khasiana OX=383665 GN=rpoB PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15 Identity = 59/105 (56.19%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of CmaCh04G019590 vs. ExPASy TrEMBL
Match: A0A6H0ES05 (DNA-directed RNA polymerase subunit beta OS=Indofevillea khasiana OX=383665 GN=rpoB PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15 Identity = 59/105 (56.19%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of CmaCh04G019590 vs. NCBI nr
Match: P08036.1 (RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta; Short=RNA polymerase subunit beta [Saponaria officinalis] >CAA30075.1 RNA polymerase, partial [Saponaria officinalis]) HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15 Identity = 58/101 (57.43%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CmaCh04G019590 vs. NCBI nr
Match: QKV48483.1 (RNA polymerase beta subunit [Bauhinia blakeana]) HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15 Identity = 57/105 (54.29%), Postives = 63/105 (60.00%), Query Frame = 0
BLAST of CmaCh04G019590 vs. NCBI nr
Match: QJS52312.1 (RNA polymerase beta subunit [Indofevillea khasiana]) HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15 Identity = 59/105 (56.19%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of CmaCh04G019590 vs. NCBI nr
Match: YP_009730575.1 (RNA polymerase beta subunit [Psammosilene tunicoides] >QCP68246.1 RNA polymerase beta subunit [Psammosilene tunicoides] >QHU77278.1 RNA polymerase beta subunit [Psammosilene tunicoides]) HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15 Identity = 57/101 (56.44%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CmaCh04G019590 vs. NCBI nr
Match: YP_009751814.1 (RNA polymerase subunit beta [Indofevillea khasiana] >QIT04547.1 RNA polymerase subunit beta [Indofevillea khasiana]) HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15 Identity = 59/105 (56.19%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of CmaCh04G019590 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta ) HSP 1 Score: 81.6 bits (200), Expect = 3.4e-16 Identity = 55/100 (55.00%), Postives = 59/100 (59.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|