CmaCh04G018370 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G018370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionChlorophyll a-b binding protein, chloroplastic
LocationCma_Chr04: 9267167 .. 9267834 (+)
RNA-Seq ExpressionCmaCh04G018370
SyntenyCmaCh04G018370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCTCGTTGTGAATCTCAACAACTCTAATTTTCAGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAATCGCCGGTGATAATCTTGCGGAGAGAGAGGGAGAGAGAGAAATTACAGACGCTATTGTTTGTGTGAACTAATAATTAATGGTAAGAAGAGAGAATATTACAGTAGTGACGGAGGGGGGGGGGGGGGANGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAATTGGGAATTAGGAGGAAGAGGGGGGATAATTGGTACGGCGGACGGAGATTTGGGCGGGGATGGGGCGGCCGGTGCCAGAGCCACCGCAGCTGCTGCAGAACATGCGGCCGGAGCCAGAGCAGGTACGGCAGCCGATGTCGCGGTCGGACCAGCGGGAGCAGAGGCAGGGGACTCGACCGGTGCCGTTGCAGGAGGGGCAGCGGGGGGAGGAGCCGGCCATGGGTTTGTCCATCACGGATTTGACGAGGACGGCGCCGGCGAGGACGCTGAGGCCGGTGGCGAGTTGGGTGAGGACGATCGGAACCATAGTTGA

mRNA sequence

ATGGCTCGCTCGTTAGGGGGGATAATTGGTACGGCGGACGGAGATTTGGGCGGGGATGGGGCGGCCGGTGCCAGAGCCACCGCAGCTGCTGCAGAACATGCGGCCGGAGCCAGAGCAGGTACGGCAGCCGATGTCGCGGTCGGACCAGCGGGAGCAGAGGCAGGGGACTCGACCGGTGCCGTTGCAGGAGGGGCAGCGGGGGGAGGAGCCGGCCATGGGTTTGTCCATCACGGATTTGACGAGGACGGCGCCGGCGAGGACGCTGAGGCCGGTGGCGAGTTGGGTGAGGACGATCGGAACCATAGTTGA

Coding sequence (CDS)

ATGGCTCGCTCGTTAGGGGGGATAATTGGTACGGCGGACGGAGATTTGGGCGGGGATGGGGCGGCCGGTGCCAGAGCCACCGCAGCTGCTGCAGAACATGCGGCCGGAGCCAGAGCAGGTACGGCAGCCGATGTCGCGGTCGGACCAGCGGGAGCAGAGGCAGGGGACTCGACCGGTGCCGTTGCAGGAGGGGCAGCGGGGGGAGGAGCCGGCCATGGGTTTGTCCATCACGGATTTGACGAGGACGGCGCCGGCGAGGACGCTGAGGCCGGTGGCGAGTTGGGTGAGGACGATCGGAACCATAGTTGA

Protein sequence

MARSLGGIIGTADGDLGGDGAAGARATAAAAEHAAGARAGTAADVAVGPAGAEAGDSTGAVAGGAAGGGAGHGFVHHGFDEDGAGEDAEAGGELGEDDRNHS
Homology
[Close]
BLAST of CmaCh04G018370 vs. ExPASy TrEMBL
Match: A0A5D3CWU8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002270 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 58/85 (68.24%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 14  GDLGGDGAAGARATAAAAEHAAGARAGTAADVAVGPAGAEAGDSTGAVAGGAAGGGAGHG 73
           GDL G  AAGA A  AAAEH   A AG AADV+VGPAGAE GD+  AVAG AAG GAGHG
Sbjct: 263 GDLSGKRAAGAGAATAAAEHTTRAGAGAAADVSVGPAGAETGDAASAVAGRAAGEGAGHG 322

Query: 74  F-VHHGFDEDGAGEDAEAGGELGED 98
             VH GFDEDGAGEDAEA     E+
Sbjct: 323 LVVHDGFDEDGAGEDAEAEARKREE 347

[Close]
BLAST of CmaCh04G018370 vs. NCBI nr
Match: TYK15728.1 (chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 58/85 (68.24%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 14  GDLGGDGAAGARATAAAAEHAAGARAGTAADVAVGPAGAEAGDSTGAVAGGAAGGGAGHG 73
           GDL G  AAGA A  AAAEH   A AG AADV+VGPAGAE GD+  AVAG AAG GAGHG
Sbjct: 263 GDLSGKRAAGAGAATAAAEHTTRAGAGAAADVSVGPAGAETGDAASAVAGRAAGEGAGHG 322

Query: 74  F-VHHGFDEDGAGEDAEAGGELGED 98
             VH GFDEDGAGEDAEA     E+
Sbjct: 323 LVVHDGFDEDGAGEDAEAEARKREE 347

The following BLAST results are available for this feature:
BLAST of CmaCh04G018370 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G018370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CWU81.9e-1068.24Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11... [more]
BLAST of CmaCh04G018370 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK15728.13.9e-1068.24chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa][more]
BLAST of CmaCh04G018370 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G018370.1CmaCh04G018370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0009521 photosystem
molecular_function GO:0005488 binding