CmaCh04G017230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G017230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L23, chloroplastic
Location	Cma_Chr04: 8665839 .. 8666100 (+)
RNA-Seq Expression	CmaCh04G017230
Synteny	CmaCh04G017230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCCAAGAAAGGGTAGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATGGACTCCCAAGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACGACGTATGATCATTACACTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATATTTCATCATATCCGGGATGTGATATGGTTCTGAAGATATCTGGGATGTGA

mRNA sequence

ATGGACTCCCAAGAAAGGGTAGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATGGACTCCCAAGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACGACCATGGCGATATTTCATCATATCCGGGATGTGATATGGTTCTGAAGATATCTGGGATGTGA

Coding sequence (CDS)

ATGGACTCCCAAGAAAGGGTAGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATGGACTCCCAAGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACGACCATGGCGATATTTCATCATATCCGGGATGTGATATGGTTCTGAAGATATCTGGGATGTGA

Protein sequence

MDSQERVELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPGCDMVLKISGM

Homology

[Close]

BLAST of CmaCh04G017230 vs. ExPASy Swiss-Prot
Match: Q09MB3 (50S ribosomal protein L23, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.7e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIM HTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.8e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.8e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy Swiss-Prot
Match: Q06GT3 (50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.8e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy Swiss-Prot
Match: A0ZZ77 (50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.8e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy TrEMBL
Match: A0A6M4SQ24 (50S ribosomal protein L23, chloroplastic OS=Hovenia dulcis OX=99292 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+ +PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLHPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy TrEMBL
Match: A0A7H0DHY5 (50S ribosomal protein L23, chloroplastic OS=Hovenia trichocarpa OX=345800 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+ +PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLHPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy TrEMBL
Match: A0A7G9XFT6 (50S ribosomal protein L23, chloroplastic OS=Hovenia acerba OX=210357 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+ +PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLHPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy TrEMBL
Match: A0A2P1GG18 (50S ribosomal protein L23, chloroplastic OS=Adenocalymma grandifolium OX=2099421 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY H  I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRHMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. ExPASy TrEMBL
Match: A0A7G5VSY8 (50S ribosomal protein L23, chloroplastic OS=Sida szechuensis OX=1930050 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYKRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. NCBI nr
Match: YP_009942128.1 (ribosomal protein L23 [Hovenia dulcis] >YP_009942148.1 ribosomal protein L23 [Hovenia dulcis] >YP_009992963.1 ribosomal protein L23 [Hovenia acerba] >YP_009993021.1 ribosomal protein L23 [Hovenia acerba] >YP_009994689.1 ribosomal protein L23 [Hovenia trichocarpa] >YP_009994707.1 ribosomal protein L23 [Hovenia trichocarpa] >QJS52450.1 ribosomal protein L23 [Hovenia dulcis] >QJS52451.1 ribosomal protein L23 [Hovenia dulcis] >QNO34186.1 ribosomal protein L23 [Hovenia acerba] >QNO34244.1 ribosomal protein L23 [Hovenia acerba] >QNP08849.1 ribosomal protein L23 [Hovenia dulcis])

HSP 1 Score: 77.4 bits (189), Expect = 4.6e-11
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+ +PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLHPG 82

[Close]

BLAST of CmaCh04G017230 vs. NCBI nr
Match: YP_009864874.1 (50S ribosomal protein L23 [Wurmbea burttii] >YP_009864893.1 50S ribosomal protein L23 [Wurmbea burttii] >QKE32869.1 50S ribosomal protein L23 [Wurmbea burttii] >QKE32888.1 50S ribosomal protein L23 [Wurmbea burttii])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYKRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. NCBI nr
Match: AVM82047.1 (ribosomal protein L23 [Adenocalymma acutissimum] >AVM82048.1 ribosomal protein L23 [Adenocalymma acutissimum] >AVM83900.1 ribosomal protein L23 [Adenocalymma grandifolium] >AVM83901.1 ribosomal protein L23 [Adenocalymma grandifolium])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY H  I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRHMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. NCBI nr
Match: YP_009967819.1 (ribosomal protein L23 [Sida szechuensis] >YP_009967838.1 ribosomal protein L23 [Sida szechuensis] >QMX76805.1 ribosomal protein L23 [Sida szechuensis] >QMX76806.1 ribosomal protein L23 [Sida szechuensis])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYKRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. NCBI nr
Match: YP_010024036.1 (ribosomal protein L23 [Abutilon theophrasti] >YP_010024055.1 ribosomal protein L23 [Abutilon theophrasti] >QOP63382.1 ribosomal protein L23 [Abutilon theophrasti] >QOP63398.1 ribosomal protein L23 [Abutilon theophrasti] >QQO80694.1 ribosomal protein L23 [Abutilon theophrasti] >QQO80713.1 ribosomal protein L23 [Abutilon theophrasti])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYKRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP K +RMGPI+GHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPG 82

[Close]

BLAST of CmaCh04G017230 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP K +RMGPI+GHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPG 82

The following BLAST results are available for this feature:

BLAST of CmaCh04G017230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09MB3	6.7e-13	79.55	50S ribosomal protein L23, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl23-A P...	[more]
A0A378	8.8e-13	79.55	50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A P...	[more]
Q4VZK6	8.8e-13	79.55	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P...	[more]
Q06GT3	8.8e-13	79.55	50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl2...	[more]
A0ZZ77	8.8e-13	79.55	50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl2...	[more]

BLAST of CmaCh04G017230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M4SQ24	2.2e-11	81.82	50S ribosomal protein L23, chloroplastic OS=Hovenia dulcis OX=99292 GN=rpl23 PE=...	[more]
A0A7H0DHY5	2.2e-11	81.82	50S ribosomal protein L23, chloroplastic OS=Hovenia trichocarpa OX=345800 GN=rpl...	[more]
A0A7G9XFT6	2.2e-11	81.82	50S ribosomal protein L23, chloroplastic OS=Hovenia acerba OX=210357 GN=rpl23 PE...	[more]
A0A2P1GG18	3.8e-11	81.82	50S ribosomal protein L23, chloroplastic OS=Adenocalymma grandifolium OX=2099421...	[more]
A0A7G5VSY8	3.8e-11	81.82	50S ribosomal protein L23, chloroplastic OS=Sida szechuensis OX=1930050 GN=rpl23...	[more]

BLAST of CmaCh04G017230 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009942128.1	4.6e-11	81.82	ribosomal protein L23 [Hovenia dulcis] >YP_009942148.1 ribosomal protein L23 [Ho...	[more]
YP_009864874.1	7.9e-11	81.82	50S ribosomal protein L23 [Wurmbea burttii] >YP_009864893.1 50S ribosomal protei...	[more]
AVM82047.1	7.9e-11	81.82	ribosomal protein L23 [Adenocalymma acutissimum] >AVM82048.1 ribosomal protein L...	[more]
YP_009967819.1	7.9e-11	81.82	ribosomal protein L23 [Sida szechuensis] >YP_009967838.1 ribosomal protein L23 [...	[more]
YP_010024036.1	7.9e-11	81.82	ribosomal protein L23 [Abutilon theophrasti] >YP_010024055.1 ribosomal protein L...	[more]

BLAST of CmaCh04G017230 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	3.4e-12	72.73	ribosomal protein L23.1	[more]
ATCG01300.1	3.4e-12	72.73	ribosomal protein L23	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 5..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G017230.1	CmaCh04G017230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome