CmaCh04G017170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G017170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Arginine/serine-rich splicing factor, putative
Location	Cma_Chr04: 8643578 .. 8649315 (+)
RNA-Seq Expression	CmaCh04G017170
Synteny	CmaCh04G017170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAATGGTACGTAGAGTTTTTAGGTAATTAATGAAATTAATTCATTTGTTATATAAGCCAAGTAAATTAATAAAGTTGATTTAAGTTGTAGAGGGTTTTCTAATTCGCTCGAGTATTTTCACCCACAAAAAAAAAAAAATGTAAAGATAAATAAATTTACCTTCAAAATTCATTTTTTTTAACCTAAGAGGTGAAAATAATTTATACTTACCTTCACAAATCATGGGTTGGAAAGAGTAGGTAAATGGTAAAATTGATGAAGAAAATACAGTTTTGAAGTGGTAAAAGTAATTTTGATGGTTTGGTGTTGAGTTGGTGGGAGGACAGGGTGCGTGTTGAGTGGGGCATTCTCCTTCTGTATTTATTCAATTTAAATGGGTCCAACTTTGATTTCAACAAAGATTGAGGGTTCAAACATAAAAAAACAAATAATTAAATATGTTGCACTGATATTTCTGGTTTAATATCAGTGCAACATCTTAGTAAATATTGTTTACTTTGATCTGTTACGTATCGTCATCAATCTTACAGTTATAAAACGCATATATTAGAGAGAAAATTTTACACATTTGTAAGAAATGTTTCATTCTCCTCTCCAATAAATATAGGATCTCACAATCCCACCTCCCTTGGATGTCAACGTCCTCGTTGGCACACCGTCCGATGTCTAGCTTTAATATCATTGGTTGCTCAAACCTACCATTGAATAATAAAGCCTTTAAAATTTGAATATTGTACTTATTTATATTTTTTTTAAAAAAATCACAATTCCCTATTTTAAATTTATTTAAATTATATTTTAAAACTCATTTATATTAACATTCTAATCTCTAGACCACTCATTAATTAAAGTCAAATTAATATGCTTTTTTCTAAAGTTTCAAGTTATTTAAAGAAAAATTAACACGTGGATGTAATACTACCGTAGATTAAATTAGAGATTAGGTGATATCTATTTTCACAAAGTCGAACTTAAAAATTATTTTTTTTTTCCATTTTTATATCTATTTTGTGTCGAGAAAATAAGTTCGATTCTAGAAATTCTTCAATTTCTGATCCATTTTCATCCACTTTGAAATATTTTTTTTTCTTTAAATATCTAAAGAACATTGATACCATAAAAATAGACTTTTAACTTATTTTAGAATTTGTATGCAAATATAGAAGAAGTTTCAAAACATAGTAAAAAGATTTTACTTTGTATAATGGTAAATTCATCGCCTCTGTAAACTTTTTTTTACCAGTCTCGAGCAAGCGAGTTTTCTTACTCGAGAAAAATTAGCTTTATAATTTACATCTCTAATTAAAAGCCATTTGTTTACACCACCTATCTAATTATCTAATTATGGTCATAATATAATTTTAGTTTATATAATTTAATTGGATATTGATAATCTTTAAATTTTAAATTTGATCTATATGCTCGATTAAACCTCACCCGTATTCTTAAATTATTTTTTAATTCGTAATAAGTGAGCTCTGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGATTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGGGACTTTCATCATCCAACACCTCCCCTCGAATAAAGCACGCCTCCCCTTAATCGAGGCTCGACTCCTTTGGAGTCTTAGTCATTTTTGACTGCCTTCGTACCTTGCTCGACTCCTTTGGAGTCTTAGTCATTTTTGACTGCCTTCGTACCTTCAAGGAGGCTTGACTTCTTTTTGGAGTCCTTTGTTCGACATTTAAGGATTTGTCAATCTATTGGCACGGCTAAGTTTAGGGCATGACTCTGATACCATGTTAGATGAACACGACTCTTCGAAGTGTTTACAAGATCTAAAACCTACTATTATAGTTTATAAATTTAATGCAAGTCCCACGTTTTATTGTTTATTTTATTTTATTTTTTAAGATTATTATACAAAATAACAGACAATTTTAATTTTCCATCCTCCAACCATAAACATAGACCAAAGTAACCCTACAATTTTGCAACAACGGTCAAATTAATTGACCGAAAGTGAGAATCAAAACGTAATTTAAGAATTTTCCAATTTTGTTCAACATATTTGAAATGAAGGTCGTTCAAAGAAATAATAATAATAAAATATTAAATTCATATTATATAATTCAAATATAATCAAAATTCAAATTCATCGTCTTTTTTTAATAAATAATTTAATCAGTAATACGAGACTTACTGAGAATAAAGTGAATATAAATTGTAATATGAATTTACAGTAAAATTGAATGAAAAATAAATAAAATCCCAAAATTACGACATTTTTTAATCGCACACAAATTATACTAAAAGAAAATCTGGCCCAAAGGCCCATCAAGATGTAATGGGCCCAATATGGCTGCCATCATATATTCATCAACAACCAGAAAACAAAACTCACATATCACTTGACTCACAACTTCGGTAGACTTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACCGTTTTCCTACCTTATCGCCGGCTGATCTGTTCGTACTTTTTGACGAATCCAAGAGATCTTTTTTCTTGGTAGGCTTCAGCTTCGCGATCAATACGTGCATAACCCTAATTCTTCCTCATTTTTTGTTTATTAATCCTTAAACTAGCGGTTCGATTTTGTTTTTCCCCTTCCATTTTTGATGATCTCCTGCAAATGCTTCGTTTGTGAACTTTCTGTGTGTGTATTTTTTTCCCCATGTAGACTTATATAGGTGTTGCAGCTTTCGCATCCTGGGGTTGTGAGGGTTGTTTTTCCATTCCAGTTTGTTGTTTAGATTACATTCTAACTCTTACTATTTTCAGGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGCAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAGATGAATTTCGAATGTTCGGTGTTCTGAGGAGGTGATTTGAGTTTGAAATTATTGTATCGAGGCATTCTTTTCATGTATTTCTTAAACTAGCATATTTTAGACGCATGATATGATATCTACCGAATGGTTCGAAATGTGGAATTTTAAGCTCCTGGGTTCTTTCAGTGGCAGTGTGTTGGGTTCTTTCAGTATATGCCCTAGATTTTTTACAGCACATAAATATCTATCCATCCCGTTATACCTAGCCGAAGCTAGATATTTCAGCACTCTGCAGGGGAAGAAAAAAGAAACAGAACAGAAAAAACCCTTCCATAGCAATGAGTGCTCGCTAGTTGGACTCTGCTTCATGCATAAGTCCATATCTTCCTTATCGTTAACTTTTTGTTTAAGAACTGAACCCAATGCACAGACTCTCTTAGATATGTCCTCTGACGTTTTCTGATGTCTATCCTTGAGATTAGTTGGCTCAATGTGCATGGCTCATATCTCAAACTCATTTGTACCTCGACCAAAAGCCAGAGTAGTATTTCTGTGGTCTAGATTTTGCTTCAAGGACGTTTATGCCTCAATTGCATATCAGTTATTAAGATGAGATCGCTTACACCATGCATCCTCCATTTGCAATAATTTGAAACAATATATCTATTTCTTTGTTCCTTTGTATTAAAATGCATTCTGAATATTTGTCTTTGAACAAAACAATACAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTTTAGATGCAATACAAGCATTGGATGGTCAGTTTTAAATAAAAGATCTTTTTTTTTTTTTTTTTGTCTTGTAGGTATCAAATTTTGCATTGCATTACATTCCTTCTATAAAATGTTATTTTCTTTTGTATATGTGTGTGCGCGCATGCTTTTCTCGACTACTAGTGAGTTTGACATGTGCGGGAGCACTCTCCTTGGCTTTATCTGTAATCTAGTTTTCATTACTGCAGTCAATCAGAAATTTATTATTGATCTAGCTTAATGTCATCTTTGGTCTGCTAAATTGAACTAAATCGTGGAAATTTACCTTATTCTTTAAGACCACCTTATTGAAAAAGAGGGTAATGAATGGCCCTATCCTCTTTAATATGCTTCAAAAGATGTGATTTTGGGAATTATCATGATTCTAAGATATAGAAACTTTTGAGGGCTATGGAAGCCATTTTTATCAACCAGTTGATTCTATCTTGAACCAGCATCTAATCTCTTTGGCTGTGGAAGGCTAAAGTGCCTAAGAAGACTTAACAGCTTCAGTCTTCATGTGGAGTTTATTCCATAATGAGCTAAATACTTGCAATAAGCGTTAACACCACTTCCATGCTCCTAGCCTCTCATCTAGCTCCTATTGTGCATTATATGCAAGCATGATGAAGAGAATCAATTTAATCTCTTTTTCTAGACGTTCAGCTCCCTTTTTTCAAAAAAAATTTCCCATAAATTGTTCACTGTTTTTGGCATCTCTTGGTGCTTGCCCAAGTGTCACAAGTTGGTAGTCTAGTCTTACAACTCCGTTGTGATCATCCTTTCATAGGTAAAATAAAGAGCTGTGGAATAATTCAGATATTTCCATGTAATGGATAATGGTTTGAGAGAAGTCAAATGAATTTTCATGATGCTTTCTCTATGGTGGTCTTGTTGGACCTTGTGAGCTTTTTTCCTATATGGTGCCCTAGATCAATATTTTTCTTTGCAATTAAAGTCTATCCTTAATCCGGGATCCTTTTCTATAAATTCCCAGGGCTAATAGGTTGATTCCTTATCCCCCTATTCTTAGTTTCATTGCCTTGAGTTAAGTTCATCTTATCTTTTATGTGTGATTTTATTGGTTTCTTTTCATAGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGCTATGAAAGATATGGTCGCAGGTGTGTCAAAGCTGTGTGTGTGTGTGTTTTTTTAAAACACACCAAGTTATCTAATAGATGTCAATTCAACAGGTGGTTTGGTTTCATATAAACTGAAGAATTTGATGTTCTATCACTTTTCCTTTTTCTTGTGTAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGCAGCTACAGCAGATCCCCTCCACCCCGACATGCTCGTCGTGCTTCACCTTATGCTAATGGGTATGCCTTCTTAGTCATGAGAACTATTCACTACAACTATTTAGTTAGTGAAAGGCGAGGGAACTTAATTGCCTTGCATAGGTTGTTTTGTGCACATGGGCCTTGGGTAATCATTGTAGTGCAGTAGAACAAGGTTGTCTTGAACGGCACTGATGATTTTGAAGATTCCAGGCCGTCACTAGTATTCTCTCCCTTGACTAACTAGGAATTTCTTAATTGTTTTACCCCCTCCTGGCCTATGTTTGCTTTAAATGATCCTCTACAAATTCTTGTCAATACGTACTTGACTGAGCTACATATTTCGTAACTTATACTTTTAGATTACAAGTACATCGATCTGATAGTTGCATGTTAATCATTATTGCAGAGATTGA

mRNA sequence

ATGTCCAATGACTTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACCGTTTTCCTACCTTATCGCCGGCTGATCTGTTCGTACTTTTTGACGAATCCAAGAGATCTTTTTTCTTGGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGCAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAGATGAATTTCGAATGTTCGGTGTTCTGAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTTTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGCTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGCAGCTACAGCAGATCCCCTCCACCCCGACATGCTCGTCGTGCTTCACCTTATGCTAATGGAGATTGA

Coding sequence (CDS)

ATGTCCAATGACTTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACCGTTTTCCTACCTTATCGCCGGCTGATCTGTTCGTACTTTTTGACGAATCCAAGAGATCTTTTTTCTTGGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGCAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAGATGAATTTCGAATGTTCGGTGTTCTGAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTTTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGCTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGCAGCTACAGCAGATCCCCTCCACCCCGACATGCTCGTCGTGCTTCACCTTATGCTAATGGAGATTGA

Protein sequence

MSNDFRASELRDYGQHRFPTLSPADLFVLFDESKRSFFLELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARRASPYANGD

Homology

[Close]

BLAST of CmaCh04G017170 vs. ExPASy Swiss-Prot
Match: O81127 (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.0e-64
Identity = 144/200 (72.00%), Postives = 153/200 (76.50%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 108 KNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 167
           KNGWRVELSH  KGG GGGGGRR        GG +D KCYECGE GHFARECR     RG
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGRR--------GGIEDSKCYECGELGHFARECR-----RG 120

Query: 168 AGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHAR 227
            G   RRSPSPRRRRSP Y  Y RRS SPRG+RSPPRRRS+TPP+RGRSYSRSPP R +R
Sbjct: 121 RGSVRRRSPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 180

Query: 228 ------------RASPYANG 235
                       R SPYANG
Sbjct: 181 RDSPRRRDSPYGRRSPYANG 186

[Close]

BLAST of CmaCh04G017170 vs. ExPASy Swiss-Prot
Match: O81126 (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.8e-60
Identity = 138/193 (71.50%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 108 KNGWRVELSHN--SKGGGGGGGRRGRGGGG-GGGGGDDLKCYECGEPGHFARECRSRGGS 167
           KNGWRVE SHN   +GGGG GG RG GGGG GG GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 168 RGAGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKR-SPPRRRSIT-PPKRGRSYSRSPPP 227
                  R    PR RRSPS   YGRRS SPR +   PPRRRS + PP RGRSYSRSPPP
Sbjct: 121 GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPP 180

Query: 228 RHARRASPYANGD 236
             AR   PYANG+
Sbjct: 181 YRAREEVPYANGN 190

[Close]

BLAST of CmaCh04G017170 vs. ExPASy Swiss-Prot
Match: Q9SJA6 (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.4e-59
Identity = 133/189 (70.37%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVE SHN  GGGG GG RG G GG G GG DLKCYECGE GHFARECRSRGGS G 
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGR 120

Query: 168 GGGLRRSPS-PRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHAR 227
                RS S PR R+SP+Y   GRRS SPR +  PP RR  +P  RGR+YSRSPPP  AR
Sbjct: 121 RRSRSRSRSPPRYRKSPTYG--GRRSYSPRARSPPPPRRR-SPSPRGRNYSRSPPPYRAR 180

Query: 228 RASPYANGD 236
              PYANG+
Sbjct: 181 DEVPYANGN 186

[Close]

BLAST of CmaCh04G017170 vs. ExPASy Swiss-Prot
Match: Q69KL9 (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-51
Identity = 123/191 (64.40%), Postives = 135/191 (70.68%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           M RVY+GNLDPRVT RELEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELS N+  G GG  R          G  + KCYECGE GHFARECR R GS G 
Sbjct: 61  KNGWRVELSRNASSGRGGRDRY---------GSSESKCYECGETGHFARECRLRIGSGGL 120

Query: 168 GGGLRRSPSPRRRRSPSYER---YGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRH 227
           G G RRS S  R RSP Y R   YGRRS SP G+   PRRRS++ P R RSYSRSP    
Sbjct: 121 GSGRRRSRSRSRSRSPRYRRSPSYGRRSYSPAGR--SPRRRSVS-PARARSYSRSPQYNR 179

Query: 228 ARRASP-YANG 235
            R  SP Y NG
Sbjct: 181 GRDESPAYDNG 179

[Close]

BLAST of CmaCh04G017170 vs. ExPASy Swiss-Prot
Match: Q6K4N0 (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 121/190 (63.68%), Postives = 137/190 (72.11%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           M R+Y+GNLDPRVT  ELEDEFR+FGVLRSVWVAR+PPG+AFI+FDD+RDA DA++ LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELS NS   GG    R R       GG ++KCYECGE GHFARECR R G  G 
Sbjct: 61  KNGWRVELSRNSSSRGG----RDR------HGGSEMKCYECGETGHFARECRLRIGPGGL 120

Query: 168 GGGLRRSPSPRRRRSPSYER---YGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRH 227
           G G RRS S  R RSP Y +   YGRRS SPR +   PRRRS++ P RGRSYSRSP    
Sbjct: 121 GSGKRRSRSRSRSRSPQYRKSPTYGRRSYSPRDR--SPRRRSVS-PVRGRSYSRSP---R 174

Query: 228 ARRASPYANG 235
            R  SPYA+G
Sbjct: 181 GRGGSPYADG 174

[Close]

BLAST of CmaCh04G017170 vs. ExPASy TrEMBL
Match: A0A6J1KZV2 (serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=LOC111497790 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.7e-97
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 180

Query: 228 ASPYANGD 236
           ASPYANGD
Sbjct: 181 ASPYANGD 188

[Close]

BLAST of CmaCh04G017170 vs. ExPASy TrEMBL
Match: A0A6J1GX57 (serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita moschata OX=3662 GN=LOC111458322 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 7.5e-95
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 180

Query: 228 ASPYANGD 236
           ASPYANGD
Sbjct: 181 ASPYANGD 186

[Close]

BLAST of CmaCh04G017170 vs. ExPASy TrEMBL
Match: A0A1S3BEJ4 (serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC103489020 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.7e-92
Identity = 183/188 (97.34%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGRG GGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHARR 180

Query: 228 ASPYANGD 236
           ASPYANGD
Sbjct: 181 ASPYANGD 187

[Close]

BLAST of CmaCh04G017170 vs. ExPASy TrEMBL
Match: A0A5D3CUM7 (Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00890 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 182/187 (97.33%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGRG GGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHARR 180

Query: 228 ASPYANG 235
           ASPYANG
Sbjct: 181 ASPYANG 186

[Close]

BLAST of CmaCh04G017170 vs. ExPASy TrEMBL
Match: A0A6J1G1N9 (serine/arginine-rich splicing factor RSZ21-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449845 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 3.1e-88
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRV+ER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGG R   GGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 
Sbjct: 61  KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHAR 
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPLRHARH 180

Query: 228 ASPYANGD 236
           ASPYANGD
Sbjct: 181 ASPYANGD 187

[Close]

BLAST of CmaCh04G017170 vs. NCBI nr
Match: XP_023004543.1 (serine/arginine-rich splicing factor RSZ21-like [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 9.7e-97
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 180

Query: 228 ASPYANGD 236
           ASPYANGD
Sbjct: 181 ASPYANGD 188

[Close]

BLAST of CmaCh04G017170 vs. NCBI nr
Match: XP_022956661.1 (serine/arginine-rich splicing factor RSZ21-like [Cucurbita moschata] >XP_023526643.1 serine/arginine-rich splicing factor RSZ21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.7 bits (914), Expect = 1.6e-94
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 180

Query: 228 ASPYANGD 236
           ASPYANGD
Sbjct: 181 ASPYANGD 186

[Close]

BLAST of CmaCh04G017170 vs. NCBI nr
Match: XP_008446226.1 (PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo] >XP_008446227.1 PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo])

HSP 1 Score: 348.2 bits (892), Expect = 5.5e-92
Identity = 183/188 (97.34%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGRG GGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHARR 180

Query: 228 ASPYANGD 236
           ASPYANGD
Sbjct: 181 ASPYANGD 187

[Close]

BLAST of CmaCh04G017170 vs. NCBI nr
Match: XP_011655636.1 (serine/arginine-rich splicing factor RSZ21 [Cucumis sativus] >KAE8648723.1 hypothetical protein Csa_008378 [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 2.7e-91
Identity = 184/189 (97.35%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGR-GGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 167
           KNGWRVELSHNSKGGGGGGGRRGR GGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 120

Query: 168 AGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHAR 227
            GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHAR
Sbjct: 121 VGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHAR 180

Query: 228 RASPYANGD 236
           RASPYANGD
Sbjct: 181 RASPYANGD 188

[Close]

BLAST of CmaCh04G017170 vs. NCBI nr
Match: TYK15593.1 (serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 2.7e-91
Identity = 182/187 (97.33%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 108 KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 167
           KNGWRVELSHNSKGGGGGGGRRGRG GGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 168 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 227
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHARR 180

Query: 228 ASPYANG 235
           ASPYANG
Sbjct: 181 ASPYANG 186

[Close]

BLAST of CmaCh04G017170 vs. TAIR 10
Match: AT1G23860.1 (RS-containing zinc finger protein 21 )

HSP 1 Score: 248.1 bits (632), Expect = 7.2e-66
Identity = 144/200 (72.00%), Postives = 153/200 (76.50%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 108 KNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 167
           KNGWRVELSH  KGG GGGGGRR        GG +D KCYECGE GHFARECR     RG
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGRR--------GGIEDSKCYECGELGHFARECR-----RG 120

Query: 168 AGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHAR 227
            G   RRSPSPRRRRSP Y  Y RRS SPRG+RSPPRRRS+TPP+RGRSYSRSPP R +R
Sbjct: 121 RGSVRRRSPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 180

Query: 228 ------------RASPYANG 235
                       R SPYANG
Sbjct: 181 RDSPRRRDSPYGRRSPYANG 186

[Close]

BLAST of CmaCh04G017170 vs. TAIR 10
Match: AT1G23860.2 (RS-containing zinc finger protein 21 )

HSP 1 Score: 248.1 bits (632), Expect = 7.2e-66
Identity = 144/200 (72.00%), Postives = 153/200 (76.50%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 108 KNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 167
           KNGWRVELSH  KGG GGGGGRR        GG +D KCYECGE GHFARECR     RG
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGRR--------GGIEDSKCYECGELGHFARECR-----RG 120

Query: 168 AGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHAR 227
            G   RRSPSPRRRRSP Y  Y RRS SPRG+RSPPRRRS+TPP+RGRSYSRSPP R +R
Sbjct: 121 RGSVRRRSPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 180

Query: 228 ------------RASPYANG 235
                       R SPYANG
Sbjct: 181 RDSPRRRDSPYGRRSPYANG 186

[Close]

BLAST of CmaCh04G017170 vs. TAIR 10
Match: AT1G23860.4 (RS-containing zinc finger protein 21 )

HSP 1 Score: 241.1 bits (614), Expect = 8.9e-64
Identity = 141/200 (70.50%), Postives = 150/200 (75.00%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 108 KNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 167
           KNGWRVELSH  KGG GGGGGRR        GG +D KCYECGE GHFARECR     RG
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGRR--------GGIEDSKCYECGELGHFARECR-----RG 120

Query: 168 AGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHAR 227
            G   RRSPSPRRRRSP Y      S SPRG+RSPPRRRS+TPP+RGRSYSRSPP R +R
Sbjct: 121 RGSVRRRSPSPRRRRSPDY-----GSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 180

Query: 228 ------------RASPYANG 235
                       R SPYANG
Sbjct: 181 RDSPRRRDSPYGRRSPYANG 182

[Close]

BLAST of CmaCh04G017170 vs. TAIR 10
Match: AT4G31580.1 (serine/arginine-rich 22 )

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-61
Identity = 138/193 (71.50%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 108 KNGWRVELSHN--SKGGGGGGGRRGRGGGG-GGGGGDDLKCYECGEPGHFARECRSRGGS 167
           KNGWRVE SHN   +GGGG GG RG GGGG GG GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 168 RGAGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKR-SPPRRRSIT-PPKRGRSYSRSPPP 227
                  R    PR RRSPS   YGRRS SPR +   PPRRRS + PP RGRSYSRSPPP
Sbjct: 121 GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPP 180

Query: 228 RHARRASPYANGD 236
             AR   PYANG+
Sbjct: 181 YRAREEVPYANGN 190

[Close]

BLAST of CmaCh04G017170 vs. TAIR 10
Match: AT4G31580.2 (serine/arginine-rich 22 )

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-61
Identity = 138/193 (71.50%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 48  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 107
           M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 108 KNGWRVELSHN--SKGGGGGGGRRGRGGGG-GGGGGDDLKCYECGEPGHFARECRSRGGS 167
           KNGWRVE SHN   +GGGG GG RG GGGG GG GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 168 RGAGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKR-SPPRRRSIT-PPKRGRSYSRSPPP 227
                  R    PR RRSPS   YGRRS SPR +   PPRRRS + PP RGRSYSRSPPP
Sbjct: 121 GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPP 180

Query: 228 RHARRASPYANGD 236
             AR   PYANG+
Sbjct: 181 YRAREEVPYANGN 190

The following BLAST results are available for this feature:

BLAST of CmaCh04G017170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81127	1.0e-64	72.00	Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
O81126	5.8e-60	71.50	Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
Q9SJA6	6.4e-59	70.37	Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q69KL9	4.9e-51	64.40	Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=3...	[more]
Q6K4N0	1.1e-50	63.68	Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CmaCh04G017170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZV2	4.7e-97	100.00	serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GX57	7.5e-95	98.94	serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BEJ4	2.7e-92	97.34	serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC1034890...	[more]
A0A5D3CUM7	1.3e-91	97.33	Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A6J1G1N9	3.1e-88	94.68	serine/arginine-rich splicing factor RSZ21-like isoform X1 OS=Cucurbita moschata...	[more]

BLAST of CmaCh04G017170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004543.1	9.7e-97	100.00	serine/arginine-rich splicing factor RSZ21-like [Cucurbita maxima]	[more]
XP_022956661.1	1.6e-94	98.94	serine/arginine-rich splicing factor RSZ21-like [Cucurbita moschata] >XP_0235266...	[more]
XP_008446226.1	5.5e-92	97.34	PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo] >XP_0084462...	[more]
XP_011655636.1	2.7e-91	97.35	serine/arginine-rich splicing factor RSZ21 [Cucumis sativus] >KAE8648723.1 hypot...	[more]
TYK15593.1	2.7e-91	97.33	serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh04G017170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23860.1	7.2e-66	72.00	RS-containing zinc finger protein 21	[more]
AT1G23860.2	7.2e-66	72.00	RS-containing zinc finger protein 21	[more]
AT1G23860.4	8.9e-64	70.50	RS-containing zinc finger protein 21	[more]
AT4G31580.1	4.1e-61	71.50	serine/arginine-rich 22	[more]
AT4G31580.2	4.1e-61	71.50	serine/arginine-rich 22	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 50..116 e-value: 9.9E-18 score: 74.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 51..108 e-value: 4.1E-16 score: 58.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 49..120 score: 16.124914
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 144..160 e-value: 1.9E-5 score: 34.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 144..159 e-value: 1.1E-7 score: 31.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 144..160 score: 11.037273
None	No IPR available	GENE3D	4.10.60.10		coord: 144..187 e-value: 1.6E-7 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..221
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 39..233
None	No IPR available	PANTHER	PTHR23147:SF164	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1	coord: 39..233
None	No IPR available	CDD	cd12373	RRM_SRSF3_like	coord: 50..118 e-value: 2.64337E-35 score: 118.492
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 44..143 e-value: 5.4E-20 score: 73.8
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 127..164
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 46..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G017170.1	CmaCh04G017170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding