CmaCh04G012760 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G012760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 6516995 .. 6518950 (+)
RNA-Seq ExpressionCmaCh04G012760
SyntenyCmaCh04G012760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATACAGAAAGGTTTTACACACGAGGTTCCAAAATGTATAAACCCTAACTATCCTCAGATACGGACGGGTTTGAAGATTAATCGCGAAAACAACTGATTGAGGGTGGGGATAAAAACAATAAAACCTTACGAATTCACAAAGAAGTTGAAGCTCGTCTTCAAGAAGGTGCTGGCCTTCCTTGACCTTAGCGATCCACTGGTCCAAATCCATGTAAGAAGAGCGACAATGGAGAACGGAACGAGAAGAAAAGGCAACCCTAGAGAGAGAAAACTCCGATTAATTATATGGAGGCTGTGATTAGCCGATTGAAATTGAAATTGAAATTTCAGTGGAACGAGCCGACGCTTACCAAACAGATCCGTCCAACCCACCGCCCCCATTTTGTTAAAATTTCAGAGAAAAACACCTCTGTTTTATAAATAAAATTTTTGTAAAAATAAATAAATCAATCAAAATAATTATTCATTTCTTAAATTGATTTTTTGTGTCATCCTTATCTAATTAATTCAAACTTTTATAAAATTTTTTAAGTTCTAAATTCGTTTCCCTTCATGTATCCAACCATGTAACTAATTTAACTGATGTCTATTCAACTCATTAGTTTCCGTTTATTTTTTTGTCCATGGAAAAATATCTGATCGAACTAAATATTATATAATTTAGACATCGCACCATTTTAATGTATGTATTATTATAATTGTTGTTGTTTAATCGCGTACTTCATTTCAATAAATCATCATCCGATTATTTATCGTTCATCTTTCAATAGGCTTAATTGCTGCCTCTAAAAAAAATAAAATTCTGAAAAAATTTAAATAAGAAAGAAAAATAAAATAAACAAGCACCAAAAATTAAATCAATTTATTCAAAATATTATAGTGGAAATACAATTATAAATAAATAAATAAATAAACAAACAAACAAAAAATTTTAAAAATGTAAAAATTAACTGACATTCCGGAACCATAAAATATATTTGGTAAACAACTTATTTGTAGACTCTCCAAAGGCTTTATTTAAACTCTAAGTATGGATAGTTTTACACGGATTTAATATAATACTTTATCTTTATTCACCTCCTATTTATATTTTAGAATTTTAACCTTTAAATTTAGTAACTAAAGCATGCTTTATAATTTTAACTTAATTTAAAGTTTTAATTTCAGCAACTCAATTTGTGACATTTTAAAACTTTTATATTCCAAACCTACCAAATACGTTATATTTTCAACTTGTAAAATCATATTTAATTCAACTTTTTTATTGGTATAAATTTATTTAAGTGATACAATAATTATACAGTCTAAAATTAGACGTAAACGGATTAATTATTGAATGAGATGAACAAAAAATAATATTTAACTCATAAAATATAAAAATCGCTCCCGCGGTGCGAAATTGTTGAAGCCCCACGTATATAACTGTAATTTTAAAATTGATTGGGAAACGAGGGAATCATCTTTCATAAGAATTGGCGCGACAGTTCACGAAGAACAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCTTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCTAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTGTTGCTTTCTGAAAATGGCGACGATTCTAAGTTCGATGCCGATAGCACTTCTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGTGCAAACAGGAACATGATCGTCTCCACAATTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCATTCTGTTTGTTTGCTAGTGAAATCGCCGGGAAAACGGCCGACTGTTAGAAGATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCTTAG

mRNA sequence

ATGAAGATACAGAAAGTTCACGAAGAACAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCTTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCTAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTGTTGCTTTCTGAAAATGGCGACGATTCTAAGTTCGATGCCGATAGCACTTCTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGTGCAAACAGGAACATGATCGTCTCCACAATTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCATTCTGTTTGTTTGCTAGTGAAATCGCCGGGAAAACGGCCGACTGTTAGAAGATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCTTAG

Coding sequence (CDS)

ATGAAGATACAGAAAGTTCACGAAGAACAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCTTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCTAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTGTTGCTTTCTGAAAATGGCGACGATTCTAAGTTCGATGCCGATAGCACTTCTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGTGCAAACAGGAACATGATCGTCTCCACAATTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCATTCTGTTTGTTTGCTAGTGAAATCGCCGGGAAAACGGCCGACTGTTAGAAGATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCTTAG

Protein sequence

MKIQKVHEEQGEKQKENVVFKGVGLGLLSTNANSSCNFPSNKNLPSNREFQPISLRSRVLLSENGDDSKFDADSTSTSTRGIEKLVPMALEPLLEVVDCLSFAKRSANRNMIVSTIILPSFLYDCVLRCFHSVCLLVKSPGKRPTVRRCLQKRGGISRCS
Homology
BLAST of CmaCh04G012760 vs. ExPASy TrEMBL
Match: A0A6J1CCA9 (uncharacterized protein LOC111010260 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010260 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          VFKGVGLGL   NANSSCNFPSN     +++ SN EF PISLR R LLSENG+DSKFD  
Sbjct: 3  VFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFDTR 62

Query: 79 STSTST 80
          S+ST T
Sbjct: 63 SSSTPT 68

BLAST of CmaCh04G012760 vs. ExPASy TrEMBL
Match: A0A6J1CBZ8 (uncharacterized protein LOC111010260 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010260 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          VFKGVGLGL   NANSSCNFPSN     +++ SN EF PISLR R LLSENG+DSKFD  
Sbjct: 3  VFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFDTR 62

Query: 79 STSTST 80
          S+ST T
Sbjct: 63 SSSTPT 68

BLAST of CmaCh04G012760 vs. ExPASy TrEMBL
Match: A0A5A7STY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003260 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 45/66 (68.18%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          V  GVGLGL  TN NS+CNF SN     ++L S  EF PISLRSR LLSENGDDSKFDA 
Sbjct: 3  VLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFDAM 62

Query: 79 STSTST 80
          STST T
Sbjct: 63 STSTPT 68

BLAST of CmaCh04G012760 vs. ExPASy TrEMBL
Match: A0A1S3BDB3 (uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 45/66 (68.18%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          V  GVGLGL  TN NS+CNF SN     ++L S  EF PISLRSR LLSENGDDSKFDA 
Sbjct: 3  VLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFDAM 62

Query: 79 STSTST 80
          STST T
Sbjct: 63 STSTPT 68

BLAST of CmaCh04G012760 vs. ExPASy TrEMBL
Match: A0A6J1FZQ1 (uncharacterized protein LOC111449363 OS=Cucurbita moschata OX=3662 GN=LOC111449363 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-10
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 5   KVHEEQG--EKQKENVVFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRS 64
           +V EEQ    K K   VF+ +GLGL   NA S+CNF SN     K++ SNREFQ ISLRS
Sbjct: 26  RVSEEQAGKGKNKRMSVFESIGLGLAFRNAASTCNFLSNPGIFLKSVASNREFQQISLRS 85

Query: 65  RVLLSENGDDSKFDADSTSTST 80
           R +LSENG +S FDA S ST T
Sbjct: 86  RAMLSENGHESMFDAKSASTPT 107

BLAST of CmaCh04G012760 vs. NCBI nr
Match: KAG7031882.1 (hypothetical protein SDJN02_05923, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254.2 bits (648), Expect = 7.4e-64
Identity = 129/140 (92.14%), Postives = 133/140 (95.00%), Query Frame = 0

Query: 4   QKVHEEQGEKQKENVVFKGVGLGLLSTNANSSCNFPSNKNLPSNREFQPISLRSRVLLSE 63
           Q   E+QGEKQKENVVFKGVGLGL STNANSSCNFPSNKNLPSNREFQPISLRSRVLLSE
Sbjct: 3   QLAREDQGEKQKENVVFKGVGLGLPSTNANSSCNFPSNKNLPSNREFQPISLRSRVLLSE 62

Query: 64  NGDDSKFDADSTSTSTRGIEKLVPMALEPLLEVVDCLSFAKRSANRNMIVSTIILPSFLY 123
           NGDD+KFDAD T TSTRGIEKLVPMALE LLEVVDCLSFAKRSANRNMIVST+ILPSFLY
Sbjct: 63  NGDDAKFDADCTFTSTRGIEKLVPMALELLLEVVDCLSFAKRSANRNMIVSTVILPSFLY 122

Query: 124 DCVLRCFHSVCLLVKSPGKR 144
           DCVLRCFHSVCLL+KSPGKR
Sbjct: 123 DCVLRCFHSVCLLMKSPGKR 142

BLAST of CmaCh04G012760 vs. NCBI nr
Match: KAG6601077.1 (hypothetical protein SDJN03_06310, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-12
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 88  MALEPLLEVVDCLSFAKRSANRNMIVSTIILPSFLYDCVLRCFHSVCL 136
           MALE LLEVVDCLSFAKRSANRNMIVST+ILPSFLYDCVLRCF  +CL
Sbjct: 1   MALELLLEVVDCLSFAKRSANRNMIVSTVILPSFLYDCVLRCF-QLCL 47

BLAST of CmaCh04G012760 vs. NCBI nr
Match: XP_022139316.1 (uncharacterized protein LOC111010260 isoform X2 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-12
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          VFKGVGLGL   NANSSCNFPSN     +++ SN EF PISLR R LLSENG+DSKFD  
Sbjct: 3  VFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFDTR 62

Query: 79 STSTST 80
          S+ST T
Sbjct: 63 SSSTPT 68

BLAST of CmaCh04G012760 vs. NCBI nr
Match: XP_022139315.1 (uncharacterized protein LOC111010260 isoform X1 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-12
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          VFKGVGLGL   NANSSCNFPSN     +++ SN EF PISLR R LLSENG+DSKFD  
Sbjct: 3  VFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFDTR 62

Query: 79 STSTST 80
          S+ST T
Sbjct: 63 SSSTPT 68

BLAST of CmaCh04G012760 vs. NCBI nr
Match: XP_008445913.1 (PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-11
Identity = 45/66 (68.18%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          V  GVGLGL  TN NS+CNF SN     ++L S  EF PISLRSR LLSENGDDSKFDA 
Sbjct: 3  VLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFDAM 62

Query: 79 STSTST 80
          STST T
Sbjct: 63 STSTPT 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CCA91.4e-1268.18uncharacterized protein LOC111010260 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CBZ81.4e-1268.18uncharacterized protein LOC111010260 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5A7STY82.7e-1168.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BDB32.7e-1168.18uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=... [more]
A0A6J1FZQ13.9e-1056.10uncharacterized protein LOC111449363 OS=Cucurbita moschata OX=3662 GN=LOC1114493... [more]
Match NameE-valueIdentityDescription
KAG7031882.17.4e-6492.14hypothetical protein SDJN02_05923, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601077.11.0e-1289.58hypothetical protein SDJN03_06310, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022139316.12.9e-1268.18uncharacterized protein LOC111010260 isoform X2 [Momordica charantia][more]
XP_022139315.12.9e-1268.18uncharacterized protein LOC111010260 isoform X1 [Momordica charantia][more]
XP_008445913.15.6e-1168.18PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012760.1CmaCh04G012760.1mRNA