CmaCh04G012330 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G012330
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTBC1 domain family member 2A isoform X2
LocationCma_Chr04: 6302782 .. 6304616 (+)
RNA-Seq ExpressionCmaCh04G012330
SyntenyCmaCh04G012330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCTCCACTCTGTCTTACACATCCGTTCATGGTAAGTATTATACCTTCATAAAAAAGAGTATCTAGTACCCGTTCATGGATGAACTAATATTTAGAAAAGAAAAACTATTGTCCTTGCCTGGCTTTTTTCGTCTTCCTACGTTTGTCTCTGTTTCAGTTAAGACTGAGGCTTTACGAGCCTGCTGCGGGAACTTCAGCATAGGAACTGTATGTTTTCTTCCCGGCTACGGAAAAAAAAGAAACCTGACGAGACTGGCTTTTTTTTTTTTTGGAAAGAGACCATCAGTCGATAACCTTAATCCTTTTATGAGAAACGGACGCACTACTGGTTTCCTTGTTATGTGGATCAGCAGTCAATTGTGTCGAAGGGTAATCATAGCATTTTGGTCTTGTAAATTCCTCTCGCCGTTGATTAGACCCTGCCAGTCTGCTTTCTCTCTTCTTTTTGGTAGCATTCTGGTAATGAATTTGTCATGTGTATTAGGCATCAAGTTCTTCAATGAGTTGTCTGGTGTAGGTTTTTTTATTTTTTTATTTTTTTATTTTTTTTATGCATATTCAAAATAGGTCATGGGGTGCACAACTGAGACCCCACCCATAATAATATCTCTTGTAGTCTGATACTTGAAATTTTCTCTATATTTAAATTATTAAATTTCTGCATAGGTTGTTTGGAGTTTGGGACCCGCTCTTGAAACACAAGCTGTCTCATTGCCGGACTATCAATTTGATACTTTCAATTATCATTGTTTTTCAATGCACAGTCCTTCAACACTAATTTTACTTAACTGTAAATGTAACGTAGTAGTATGCATGTTCTTATGTATCAACTTAATGCGATGAAAACTATCTCTTCCTTAGTGTCTCTGAACCTAATGTTCTAACGTCGTGCCTGCTCCGTATCCCACAGGGAAAACCATCCAATGTTGAGGACCCAAATCCAAATGATGGTAGCAAGACTACCGAAGAGGAAACTTCAATCCAGAAAAAAACTCCTGAAGAAGAGTCGCCAAATTCAGGCGTTGATCAGTAACACATTAACGGCCTCCATGACGAGTAAAACTCCATCTCAAAAATGGTACTCGTATCTATACATTACAAATTGCAGTACACCATCATTTTGGAGTTGCATTTCCTGTATCTATATACCACTCCCAACAATAGTTTTAAAGATATATTTATCTTTTCTCTATCAGCATAGAAATATATAATATATATAGATACCAGGTAGAACCAATTTTTTGGTTGATTCTTTGTTTGTTTGGTTAAATTACAGGATAATAATTGTAAAATCTTTGTATTTACAAAAAATCTTGTCATGCCATCATCCTTTCTAAGTACGGTTCCCATTAGGCCCTCATAAAGACTTGAAAAAACTTCCTAATCCTAACAGATTGCATTTCAAAATAACAGGTAAGAGAAGTTGGGAACATAGATTGTCCACAAAACCGGTAGGCTCTTAGCCCTGTTTCTGTGTCTTTATAATGCTGTTGTTATTCAATTTTCCATAAATGCTTGCTCTGTTGTCCATGTACTTTTTGACTTTACATATTTAATTCTCCCTCTCATAATTCAAAGCCCAGAGGCTGACCATGAAATTAGGTGGAGTTCCAATTGGCTACCACGTGTCAGCTTACTGTAATTGGTTGGTGACCAAGAACATGTTAAGGACACTGTTTGTTGCCATTTGCAGCTTCTGGCCAATAAATATTAGATACAACCTTGAGTAAGGCCATTTCTAGTAGAACAGTAAATGGCTTGGAAATGTATTTATAATGTATTTAATCCGTTTTAAGATATGCATTCAAAATGTAAAAATGATTAATCGC

mRNA sequence

ATGAAATCCTCCACTCTGTCTTACACATCCGTTCATGTTAAGACTGAGGCTTTACGAGCCTGCTGCGGGAACTTCAGCATAGGAACTGGAAAACCATCCAATGTTGAGGACCCAAATCCAAATGATGGTAGCAAGACTACCGAAGAGGAAACTTCAATCCAGAAAAAAACTCCTGAAGAAGAGTCGCCAAATTCAGGCGTTGATCAGTAACACATTAACGGCCTCCATGACGAGTAAAACTCCATCTCAAAAATGGTACTCGTATCTATACATTACAAATTGCAGTACACCATCATTTTGGAGTTGCATTTCCTGTATCTATATACCACTCCCAACAATAGTTTTAAAGATATATTTATCTTTTCTCTATCAGCATAGAAATATATAATATATATAGATACCAGGTAGAACCAATTTTTTGGTTGATTCTTTGTTTGTTTGGTTAAATTACAGGATAATAATTGTAAAATCTTTGTATTTACAAAAAATCTTGTCATGCCATCATCCTTTCTAAGTACGGTTCCCATTAGGCCCTCATAAAGACTTGAAAAAACTTCCTAATCCTAACAGATTGCATTTCAAAATAACAGGTAAGAGAAGTTGGGAACATAGATTGTCCACAAAACCGGTAGGCTCTTAGCCCTGTTTCTGTGTCTTTATAATGCTGTTGTTATTCAATTTTCCATAAATGCTTGCTCTGTTGTCCATGTACTTTTTGACTTTACATATTTAATTCTCCCTCTCATAATTCAAAGCCCAGAGGCTGACCATGAAATTAGGTGGAGTTCCAATTGGCTACCACGTGTCAGCTTACTGTAATTGGTTGGTGACCAAGAACATGTTAAGGACACTGTTTGTTGCCATTTGCAGCTTCTGGCCAATAAATATTAGATACAACCTTGAGTAAGGCCATTTCTAGTAGAACAGTAAATGGCTTGGAAATGTATTTATAATGTATTTAATCCGTTTTAAGATATGCATTCAAAATGTAAAAATGATTAATCGC

Coding sequence (CDS)

ATGAAATCCTCCACTCTGTCTTACACATCCGTTCATGTTAAGACTGAGGCTTTACGAGCCTGCTGCGGGAACTTCAGCATAGGAACTGGAAAACCATCCAATGTTGAGGACCCAAATCCAAATGATGGTAGCAAGACTACCGAAGAGGAAACTTCAATCCAGAAAAAAACTCCTGAAGAAGAGTCGCCAAATTCAGGCGTTGATCAGTAA

Protein sequence

MKSSTLSYTSVHVKTEALRACCGNFSIGTGKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Homology
[Close]
BLAST of CmaCh04G012330 vs. ExPASy TrEMBL
Match: A0A6J1IM42 (TBC1 domain family member 2A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477705 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 776 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 815

[Close]
BLAST of CmaCh04G012330 vs. ExPASy TrEMBL
Match: A0A6J1II82 (TBC1 domain family member 2A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477705 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 807 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 846

[Close]
BLAST of CmaCh04G012330 vs. ExPASy TrEMBL
Match: A0A6J1GZ56 (ecotropic viral integration site 5 protein homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458481 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 807 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 846

[Close]
BLAST of CmaCh04G012330 vs. ExPASy TrEMBL
Match: A0A6J1GXW1 (ecotropic viral integration site 5 protein homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458481 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 776 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 815

[Close]
BLAST of CmaCh04G012330 vs. ExPASy TrEMBL
Match: A0A6J1FQK1 (TBC1 domain family member 8B-like OS=Cucurbita moschata OX=3662 GN=LOC111447548 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSN+ED  PNDGSKTTEEET+IQKKT EEE+ N GV++
Sbjct: 802 GKPSNLED--PNDGSKTTEEETTIQKKTTEEEAQNPGVEE 839

[Close]
BLAST of CmaCh04G012330 vs. NCBI nr
Match: XP_022977365.1 (TBC1 domain family member 2A isoform X2 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 776 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 815

[Close]
BLAST of CmaCh04G012330 vs. NCBI nr
Match: KAG6601037.1 (TBC1 domain family member 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 776 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 815

[Close]
BLAST of CmaCh04G012330 vs. NCBI nr
Match: XP_022977357.1 (TBC1 domain family member 2A isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 807 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 846

[Close]
BLAST of CmaCh04G012330 vs. NCBI nr
Match: XP_022956945.1 (ecotropic viral integration site 5 protein homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 807 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 846

[Close]
BLAST of CmaCh04G012330 vs. NCBI nr
Match: KAG7031847.1 (MDR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 30  GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 70
           GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ
Sbjct: 483 GKPSNVEDPNPNDGSKTTEEETSIQKKTPEEESPNSGVDQ 522

The following BLAST results are available for this feature:
BLAST of CmaCh04G012330 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IM421.5e-11100.00TBC1 domain family member 2A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477... [more]
A0A6J1II821.5e-11100.00TBC1 domain family member 2A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477... [more]
A0A6J1GZ561.5e-11100.00ecotropic viral integration site 5 protein homolog isoform X1 OS=Cucurbita mosch... [more]
A0A6J1GXW11.5e-11100.00ecotropic viral integration site 5 protein homolog isoform X2 OS=Cucurbita mosch... [more]
A0A6J1FQK12.3e-0475.00TBC1 domain family member 8B-like OS=Cucurbita moschata OX=3662 GN=LOC111447548 ... [more]
BLAST of CmaCh04G012330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022977365.13.1e-11100.00TBC1 domain family member 2A isoform X2 [Cucurbita maxima][more]
KAG6601037.13.1e-11100.00TBC1 domain family member 9, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022977357.13.1e-11100.00TBC1 domain family member 2A isoform X1 [Cucurbita maxima][more]
XP_022956945.13.1e-11100.00ecotropic viral integration site 5 protein homolog isoform X1 [Cucurbita moschat... [more]
KAG7031847.13.1e-11100.00MDR1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmaCh04G012330 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012330.1CmaCh04G012330.1mRNA