CmaCh04G009340 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G009340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSpindle pole body component protein
LocationCma_Chr04: 4811631 .. 4812560 (-)
RNA-Seq ExpressionCmaCh04G009340
SyntenyCmaCh04G009340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGGTTGCCGTGATTCTACGACGGACGACGGAGTAGAATATGGACTGCCGCCGTATTAGTCAATGGTAGTGATTATAAGAGATTTGCTCTTTAAGCTCGCCTCCTTCTTGGCATCGGATCGGAGCTGCTGTTCTCTTTCCGATCACTCTCCTTCTGCCTAGAGACTCGACAGGAGCGGTTTAGTGTCCGATGAAATTCCTTCCCGAGTTCGTTTCTTGCTGCGTGCCGGTGAGCGTGTCGCGCATGGAGAATCCGGAAGCGACGGAGGCTCCGGGAGCCGAGGAGATAAGATCTCTGGCTCCGGTCACCACCAGAATACACCTGCGTAGAAGACGAGGTGCGCCGTATACTTCGGCGGCTAAAATGGCCGGCGATTGGACGCCGTCGCTAGGAGCGATCTCGGAGGATAATGTAGTTCTAGTAGTGATGGAGAGAAAGAAGAGCGAGGATCGGACGGCGGAATCAGAGCGATCTGTGAAGAGGAAGAGCGGATCTCGAAATGGAAAGGCAAGAGGAGTTCACGGACGTAACAACAGCAACGATTTTAGGTACGTACGTATGTCAGTTCGTGAATCTTCGGTATCATTATCGAAATCGTAACGATCTGTGAAATGAAAACGACGTCTGGAAAGAATCTTTTTGTTAATTTTCTCTCTCTCAGGCGAAGTCCGGCGGCCATACCGGTGGTGATTCCGGCGTTTTCTCCAACTCCGTTCTTATTCTGATGCAATTCTGCTTCGATTATCCGATCACTCAGGCTCGTGTAATATATGTGCATATTTGCATAACTCAATTGCATCGTAATAATGATTTGTATAATCAATAAAAAAATTGATTAGAAAAAGGTGAGGTTGAGGAGGAAACTTATCCCTGGAATTGTAGCTTGTTGGTTCAACTGCTCTCTGCAATTTTAAATCTTCCCATTTCTAC

mRNA sequence

CGGGTTGCCGTGATTCTACGACGGACGACGGAGTAGAATATGGACTGCCGCCGTATTAGTCAATGGTAGTGATTATAAGAGATTTGCTCTTTAAGCTCGCCTCCTTCTTGGCATCGGATCGGAGCTGCTGTTCTCTTTCCGATCACTCTCCTTCTGCCTAGAGACTCGACAGGAGCGGTTTAGTGTCCGATGAAATTCCTTCCCGAGTTCGTTTCTTGCTGCGTGCCGGTGAGCGTGTCGCGCATGGAGAATCCGGAAGCGACGGAGGCTCCGGGAGCCGAGGAGATAAGATCTCTGGCTCCGGTCACCACCAGAATACACCTGCGTAGAAGACGAGGTGCGCCGTATACTTCGGCGGCTAAAATGGCCGGCGATTGGACGCCGTCGCTAGGAGCGATCTCGGAGGATAATGTAGTTCTAGTAGTGATGGAGAGAAAGAAGAGCGAGGATCGGACGGCGGAATCAGAGCGATCTGTGAAGAGGAAGAGCGGATCTCGAAATGGAAAGGCAAGAGGAGTTCACGGACGTAACAACAGCAACGATTTTAGGCGAAGTCCGGCGGCCATACCGGTGGTGATTCCGGCGTTTTCTCCAACTCCGTTCTTATTCTGATGCAATTCTGCTTCGATTATCCGATCACTCAGGCTCGTGTAATATATGTGCATATTTGCATAACTCAATTGCATCGTAATAATGATTTGTATAATCAATAAAAAAATTGATTAGAAAAAGGTGAGGTTGAGGAGGAAACTTATCCCTGGAATTGTAGCTTGTTGGTTCAACTGCTCTCTGCAATTTTAAATCTTCCCATTTCTAC

Coding sequence (CDS)

ATGAAATTCCTTCCCGAGTTCGTTTCTTGCTGCGTGCCGGTGAGCGTGTCGCGCATGGAGAATCCGGAAGCGACGGAGGCTCCGGGAGCCGAGGAGATAAGATCTCTGGCTCCGGTCACCACCAGAATACACCTGCGTAGAAGACGAGGTGCGCCGTATACTTCGGCGGCTAAAATGGCCGGCGATTGGACGCCGTCGCTAGGAGCGATCTCGGAGGATAATGTAGTTCTAGTAGTGATGGAGAGAAAGAAGAGCGAGGATCGGACGGCGGAATCAGAGCGATCTGTGAAGAGGAAGAGCGGATCTCGAAATGGAAAGGCAAGAGGAGTTCACGGACGTAACAACAGCAACGATTTTAGGCGAAGTCCGGCGGCCATACCGGTGGTGATTCCGGCGTTTTCTCCAACTCCGTTCTTATTCTGA

Protein sequence

MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMAGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFRRSPAAIPVVIPAFSPTPFLF
Homology
BLAST of CmaCh04G009340 vs. ExPASy TrEMBL
Match: A0A6J1JUN0 (uncharacterized protein LOC111489053 OS=Cucurbita maxima OX=3661 GN=LOC111489053 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
           GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. ExPASy TrEMBL
Match: A0A6J1FP47 (uncharacterized protein LOC111447225 OS=Cucurbita moschata OX=3662 GN=LOC111447225 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.0e-67
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAP+TTRIH RRRRGA YTSAAKMA
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPITTRIHRRRRRGALYTSAAKMA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
           GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGS+NGKARGVHGRNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSQNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. ExPASy TrEMBL
Match: A0A6J1EVT0 (uncharacterized protein LOC111438455 OS=Cucurbita moschata OX=3662 GN=LOC111438455 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFL EFVSCCVPV++SR+ENPEAT APG EE++SLAP+TTR H RR+RGA   SAAK+A
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPSAAKLA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
            DW PSLGAISED VVLV+ ER+KS+D+TAESERSVKRKSGSR+G+ARGV+GR+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. ExPASy TrEMBL
Match: A0A6J1JD62 (uncharacterized protein LOC111483313 OS=Cucurbita maxima OX=3661 GN=LOC111483313 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 109/140 (77.86%), Postives = 126/140 (90.00%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFL EFVSCCVPV++SR+ENPEAT APG EE++SLAP+ TR H RR+RGA   SAAK+A
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPIATRKHRRRKRGALLPSAAKLA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
            DW PSLGAISED VVLV+ ER+KS+D+TA SERSVKRKSGSR+G+ARGV+GR+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. ExPASy TrEMBL
Match: A0A0A0L6G1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.8e-46
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTS-AAKM 60
           MKFL EFVSCCVPV++SR++NPE TEA G++E+RSL P+TTR H RR+R A   S AAK+
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDF 120
           A DW PSLGAISED VVLVVMER+KS+++T E ERSVKRKS SR+G++RGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 --RRSPAAIPVVIPAFSPTPFLF 141
             R+SP+AIPVVIPAFSP PFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

BLAST of CmaCh04G009340 vs. NCBI nr
Match: XP_022992846.1 (uncharacterized protein LOC111489053 [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
           GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. NCBI nr
Match: XP_022942037.1 (uncharacterized protein LOC111447225 [Cucurbita moschata])

HSP 1 Score: 263.8 bits (673), Expect = 8.2e-67
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAP+TTRIH RRRRGA YTSAAKMA
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPITTRIHRRRRRGALYTSAAKMA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
           GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGS+NGKARGVHGRNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSQNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. NCBI nr
Match: XP_023526044.1 (uncharacterized protein LOC111789638 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 2.4e-66
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAP+TTRI  RRRRGA YTSAAKMA
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPITTRIQRRRRRGALYTSAAKMA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
           GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. NCBI nr
Match: KAG6600756.1 (hypothetical protein SDJN03_05989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFLPEFVSCCVPVSVSRMEN EATEAPGAEEIRSLAP+TTRI  RRRRGA YTSAAKMA
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENSEATEAPGAEEIRSLAPITTRIQRRRRRGALYTSAAKMA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
           GDWTPSLGAISEDNVVLVVMERKK+EDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKNEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. NCBI nr
Match: XP_022932132.1 (uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 uncharacterized protein LOC111783825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-53
Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFL EFVSCCVPV++SR+ENPEAT APG EE++SLAP+TTR H RR+RGA   SAAK+A
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPSAAKLA 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120
            DW PSLGAISED VVLV+ ER+KS+D+TAESERSVKRKSGSR+G+ARGV+GR+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

BLAST of CmaCh04G009340 vs. TAIR 10
Match: AT5G54585.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 5.9e-07
Identity = 47/145 (32.41%), Postives = 66/145 (45.52%), Query Frame = 0

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFL E V  C        +  + + A  A++  S    T     RRR+           
Sbjct: 1   MKFLLELVVPCF-----GSQQFQESAASTADDSVSDETQTLMKQRRRRKRVRVAGQPGQV 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKS-----GSRNGKARGVHGRNN 120
            +W PSL  ISE+   +  +  K       E ++ V+RKS     G  + ++ G H R  
Sbjct: 61  AEWRPSLSVISENKPAITKISEKN------EEKKKVRRKSEGNGGGDASSRSGGGHIRFR 120

Query: 121 SNDFRRSPAAIPVVIPAFSPTPFLF 141
           S+DF R+  A   VIPAFSPTPF+F
Sbjct: 121 SDDFGRN--AFEPVIPAFSPTPFMF 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JUN01.5e-69100.00uncharacterized protein LOC111489053 OS=Cucurbita maxima OX=3661 GN=LOC111489053... [more]
A0A6J1FP474.0e-6797.14uncharacterized protein LOC111447225 OS=Cucurbita moschata OX=3662 GN=LOC1114472... [more]
A0A6J1EVT04.2e-5379.29uncharacterized protein LOC111438455 OS=Cucurbita moschata OX=3662 GN=LOC1114384... [more]
A0A6J1JD621.0e-5177.86uncharacterized protein LOC111483313 OS=Cucurbita maxima OX=3661 GN=LOC111483313... [more]
A0A0A0L6G13.8e-4672.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022992846.13.0e-69100.00uncharacterized protein LOC111489053 [Cucurbita maxima][more]
XP_022942037.18.2e-6797.14uncharacterized protein LOC111447225 [Cucurbita moschata][more]
XP_023526044.12.4e-6697.14uncharacterized protein LOC111789638 [Cucurbita pepo subsp. pepo][more]
KAG6600756.14.5e-6595.71hypothetical protein SDJN03_05989, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022932132.18.8e-5379.29uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 unchar... [more]
Match NameE-valueIdentityDescription
AT5G54585.15.9e-0732.41unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..121
NoneNo IPR availablePANTHERPTHR35318BNAA10G08410D PROTEINcoord: 1..140
NoneNo IPR availablePANTHERPTHR35318:SF2BNAA10G08410D PROTEINcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009340.1CmaCh04G009340.1mRNA