CmaCh04G009180 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G009180
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cma_Chr04: 4748020 .. 4749246 (-)
RNA-Seq Expression	CmaCh04G009180
Synteny	CmaCh04G009180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGGTCTTCCATTCTTCACCACTCATCTTCACCACTCATCTTCCCCATTTTCTCATAATATTCCCCCACTCGATTTCTCTCTTCTTCTCGCACCTTTCCCACAACTCTAACACACACCTCAACTACGATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAGCAGAGCCTCTTCCCACAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGTCCCGACCCCTTTCGTTTTCTCTCTCCCTACCTTTGCTTCCTTTTGTTTTAGGGAGTGTTGAAATTGATGATGTTTTTTTTATTTTATTTTATTTTGGATAGGGAAATGAACTGTGGTATGGACCAGACAGAGTAAAGTACTTGGGGCCCTTTTCCGCTCAGACTCCCTCCTACCTGAATGGAGAGTTCCCCGGCGATTATGGATGGGATACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATTTCCATCCCCATCCTTGCTTAAGAATCAATCAAGGTATTAATTTGATGAATTCAAATTTTGATTTACATATGGTCGAACGGAATTGCAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTTCAGGCCATCGTTACTGGGAAAGGCCCCCTCGAGAACCTTCTCGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTAAGCGATGTGTGGTGGGTTCGTCGATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTG

mRNA sequence

CTGGGTCTTCCATTCTTCACCACTCATCTTCACCACTCATCTTCCCCATTTTCTCATAATATTCCCCCACTCGATTTCTCTCTTCTTCTCGCACCTTTCCCACAACTCTAACACACACCTCAACTACGATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAGCAGAGCCTCTTCCCACAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGGAAATGAACTGTGGTATGGACCAGACAGAGTAAAGTACTTGGGGCCCTTTTCCGCTCAGACTCCCTCCTACCTGAATGGAGAGTTCCCCGGCGATTATGGATGGGATACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTTCAGGCCATCGTTACTGGGAAAGGCCCCCTCGAGAACCTTCTCGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTAAGCGATGTGTGGTGGGTTCGTCGATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTG

Coding sequence (CDS)

ATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAGCAGAGCCTCTTCCCACAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGGAAATGAACTGTGGTATGGACCAGACAGAGTAAAGTACTTGGGGCCCTTTTCCGCTCAGACTCCCTCCTACCTGAATGGAGAGTTCCCCGGCGATTATGGATGGGATACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTTCAGGCCATCGTTACTGGGAAAGGCCCCCTCGAGAACCTTCTCGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAA

Protein sequence

MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS

Homology

[Close]

BLAST of CmaCh04G009180 vs. ExPASy Swiss-Prot
Match: Q9S7M0 (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.2e-143
Identity = 236/263 (89.73%), Postives = 253/263 (96.20%), Query Frame = 0


Query: 2   SMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQ 61
           S   +S+++L PT FLGQ++ASS N LRDVV++G+PKYTMGN+LWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 121
           TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KW++V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFAPGS 265
           LDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of CmaCh04G009180 vs. ExPASy Swiss-Prot
Match: P27489 (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB13 PE=1 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 1.4e-139
Identity = 233/264 (88.26%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  A+ST +++ TPFLGQ++  + N LRDVVAMG+ ++TM N+LWYGPDRVKYLGPFSA
Sbjct: 4   MAATASSTTVVKATPFLGQTK--NANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSA 63

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCI PEVLEKW+K
Sbjct: 64  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVK 123

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GV
Sbjct: 124 VDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 183

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 184 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKF PG+
Sbjct: 244 LLDHLDNPVANNAWVYATKFVPGA 265

[Close]

BLAST of CmaCh04G009180 vs. ExPASy Swiss-Prot
Match: P27523 (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHBC PE=2 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 2.5e-136
Identity = 229/263 (87.07%), Postives = 245/263 (93.16%), Query Frame = 0


Query: 3   MAATSTAILRPTPFL-GQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQ 62
           MAA S A++  TPFL GQ RA+S + LRD+ A    + TMGN+LWYGPDRVKYLGPFSAQ
Sbjct: 6   MAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQ 65

Query: 63  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 122
           TPSYLNGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GC+ PEVL+KW+ V
Sbjct: 66  TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGV 125

Query: 123 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 182
           +FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 126 EFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG 185

Query: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245

Query: 243 LDHLDNPVANNAWVYATKFAPGS 265
            DHLD+PVANNAWV+ATKFAPGS
Sbjct: 246 FDHLDDPVANNAWVFATKFAPGS 268

[Close]

BLAST of CmaCh04G009180 vs. ExPASy Swiss-Prot
Match: P14278 (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB4 PE=2 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.4e-99
Identity = 183/266 (68.80%), Postives = 205/266 (77.07%), Query Frame = 0


Query: 7   STAILRPTPFLGQSRASSHNS-LRDVVAMGTPKYTM-------GNELWYGPDRVKYLGPF 66
           +T  ++ + F+GQ+   S N  +R V   G  + TM          +WYG DR KYLGPF
Sbjct: 2   ATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K 
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DH+++PVANNAW YAT F PG
Sbjct: 242 IENLSDHINDPVANNAWAYATNFVPG 264

[Close]

BLAST of CmaCh04G009180 vs. ExPASy Swiss-Prot
Match: P27494 (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB36 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.2e-99
Identity = 182/266 (68.42%), Postives = 204/266 (76.69%), Query Frame = 0


Query: 7   STAILRPTPFLGQSRASSHNSL-RDVVAMGTPKYTM-------GNELWYGPDRVKYLGPF 66
           +T+ +  + F GQ+   S N L R + +    + TM          +WYG DR KYLGPF
Sbjct: 2   ATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K 
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAV   QVVLMGL+EG+R+ G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 IENLFDHVADPVANNAWAYATNFVPG 264

[Close]

BLAST of CmaCh04G009180 vs. ExPASy TrEMBL
Match: A0A6J1K3P2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489770 PE=3 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 3.6e-154
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. ExPASy TrEMBL
Match: A0A6J1FQJ2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447875 PE=3 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.0e-152
Identity = 261/264 (98.86%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           MSMAATSTAILRPTPFLGQ+RA S+NSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. ExPASy TrEMBL
Match: A0A6J1ENC1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436057 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 6.6e-148
Identity = 252/264 (95.45%), Postives = 257/264 (97.35%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  ATST +LR TPFLGQ+R+S  N LRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. ExPASy TrEMBL
Match: A0A6J1J4D4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483299 PE=3 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.5e-147
Identity = 251/264 (95.08%), Postives = 257/264 (97.35%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  AT+T +LR TPFLGQ+R+S  N LRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATATATGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. ExPASy TrEMBL
Match: A0A6J1CN44 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012787 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 1.8e-145
Identity = 248/264 (93.94%), Postives = 254/264 (96.21%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  ATSTA+LRPTPFLGQ+R S  N LRDVVAMGT KYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATATSTALLRPTPFLGQARGSPQNPLRDVVAMGTAKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL KWL+
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLGKWLR 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           V+FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. NCBI nr
Match: XP_022993918.1 (chlorophyll a-b binding protein 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 553.9 bits (1426), Expect = 7.4e-154
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. NCBI nr
Match: KAG6600741.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 550.1 bits (1416), Expect = 1.1e-152
Identity = 262/264 (99.24%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           MSMAATSTAILRPTPFLGQ+RASS+NSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQNRASSNNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. NCBI nr
Match: XP_022943011.1 (chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 548.1 bits (1411), Expect = 4.1e-152
Identity = 261/264 (98.86%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           MSMAATSTAILRPTPFLGQ+RA S+NSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. NCBI nr
Match: XP_023538245.1 (chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 546.6 bits (1407), Expect = 1.2e-151
Identity = 260/264 (98.48%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           MSMAATSTAILRP+PFLGQ+RASS NSLRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147
Identity = 252/264 (95.45%), Postives = 257/264 (97.35%), Query Frame = 0


Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  ATST +LR TPFLGQ+R+S  N LRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CmaCh04G009180 vs. TAIR 10
Match: AT5G54270.1 (light-harvesting chlorophyll B-binding protein 3 )

HSP 1 Score: 510.4 bits (1313), Expect = 8.8e-145
Identity = 236/263 (89.73%), Postives = 253/263 (96.20%), Query Frame = 0


Query: 2   SMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQ 61
           S   +S+++L PT FLGQ++ASS N LRDVV++G+PKYTMGN+LWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 121
           TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KW++V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFAPGS 265
           LDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of CmaCh04G009180 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 358.2 bits (918), Expect = 5.6e-99
Identity = 180/267 (67.42%), Postives = 202/267 (75.66%), Query Frame = 0


Query: 7   STAILRPTPFLGQSRASSHNS-LRDVVAMGTPKYTM-------GNELWYGPDRVKYLGPF 66
           +T+ ++ + F GQ+     N  LR V   G  + TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPGS 265
           +ENL DHL +PVANNAW YAT F PG+
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPGN 265

[Close]

BLAST of CmaCh04G009180 vs. TAIR 10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2 )

HSP 1 Score: 355.9 bits (912), Expect = 2.8e-98
Identity = 178/266 (66.92%), Postives = 203/266 (76.32%), Query Frame = 0


Query: 7   STAILRPTPFLGQSRAS-SHNSLRDVVAMGTPKYTM-------GNELWYGPDRVKYLGPF 66
           +T+ ++ + F GQ+    S + ++ V  +G  + TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DHL +PVANNAW YAT F PG
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPG 264

[Close]

BLAST of CmaCh04G009180 vs. TAIR 10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3 )

HSP 1 Score: 352.8 bits (904), Expect = 2.3e-97
Identity = 177/268 (66.04%), Postives = 200/268 (74.63%), Query Frame = 0


Query: 7   STAILRPTPFLGQSRASSHNSL----------RDVVAMGTPKYTMGNELWYGPDRVKYLG 66
           +T+ ++ + F GQ+     N L            ++   T K T    +WYGPDR KYLG
Sbjct: 2   ATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKST-PQSIWYGPDRPKYLG 61

Query: 67  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 126
           PFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L 
Sbjct: 62  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 121

Query: 127 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 186
           K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G
Sbjct: 122 K-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG 181

Query: 187 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 246
              +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 -GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 247 GPLENLLDHLDNPVANNAWVYATKFAPG 264
           GP+ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 GPIENLFDHIADPVANNAWAYATNFVPG 265

[Close]

BLAST of CmaCh04G009180 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 349.0 bits (894), Expect = 3.4e-96
Identity = 177/271 (65.31%), Postives = 203/271 (74.91%), Query Frame = 0


Query: 3   MAATSTAILRP---------TPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVK 62
           MAA++ A+  P         +P   +   S   ++R  VA   PK   G+  WYG DRVK
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVA--KPKGPSGSP-WYGSDRVK 60

Query: 63  YLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPE 122
           YLGPFS ++PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE
Sbjct: 61  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120

Query: 123 VLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 182
           +L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 121 LLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 180

Query: 183 INGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 242
           + G   +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 181 VAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 240

Query: 243 TGKGPLENLLDHLDNPVANNAWVYATKFAPG 264
           TGKGP+ENL DHL +PV NNAW +AT F PG
Sbjct: 241 TGKGPIENLADHLADPVNNNAWAFATNFVPG 266

The following BLAST results are available for this feature:

BLAST of CmaCh04G009180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7M0	1.2e-143	89.73	Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P27489	1.4e-139	88.26	Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
P27523	2.5e-136	87.07	Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulg...	[more]
P14278	1.4e-99	68.80	Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P27494	4.2e-99	68.42	Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]

BLAST of CmaCh04G009180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3P2	3.6e-154	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FQJ2	2.0e-152	98.86	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1ENC1	6.6e-148	95.45	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J4D4	1.5e-147	95.08	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CN44	1.8e-145	93.94	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of CmaCh04G009180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993918.1	7.4e-154	100.00	chlorophyll a-b binding protein 3, chloroplastic [Cucurbita maxima]	[more]
KAG6600741.1	1.1e-152	99.24	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022943011.1	4.1e-152	98.86	chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita moschata]	[more]
XP_023538245.1	1.2e-151	98.48	chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
KAG6577394.1	1.4e-147	95.45	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]

BLAST of CmaCh04G009180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54270.1	8.8e-145	89.73	light-harvesting chlorophyll B-binding protein 3	[more]
AT2G05100.1	5.6e-99	67.42	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	2.8e-98	66.92	photosystem II light harvesting complex gene 2.2	[more]
AT3G27690.1	2.3e-97	66.04	photosystem II light harvesting complex gene 2.3	[more]
AT1G29910.1	3.4e-96	65.31	chlorophyll A/B binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..230 e-value: 2.8E-49 score: 167.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 53..257 e-value: 2.2E-91 score: 307.1
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 3..264
None	No IPR available	PANTHER	PTHR21649:SF129	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 3..264
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 45..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G009180.1	CmaCh04G009180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009635	response to herbicide
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009517	PSII associated light-harvesting complex II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019904	protein domain specific binding