CmaCh04G009170 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G009170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 4746625 .. 4747704 (-)
RNA-Seq ExpressionCmaCh04G009170
SyntenyCmaCh04G009170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAACCCGACAAAAATGGTATTTAATTATGAAAGGGTAAAATGGTATTTTCAGGTCCCAGGTCAAAATTCAAGAAGTACAAACATACTCCTTCTTTTAGCTTCTTGCTTCCCTTTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCAATTTCCATGGACATAACCGAAAATTCTGTTCACGAGCTCCCTCAAGGTACATTTCAGTTATGTGAAAAGGGATTGAACTTAACAGTATCAGAAAGAATGAGAATTTATCTTCCAGATGTTTTTACTTGTCGTTTCTTGTCCATTGCCCCCCTTTAAGATGTTTTAGATCTCCTGTGTTTTCATAGAGTAGTTTTCAAGTTTAACTAAGTGATTTCCCCCTTGAATTTAAAGCGATGGACGTGCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTGTAAGCTTCTACCTGGAAATTGTGCTTAATTTTTTTAACCACAATTCATCATGCGCTTTTGCTTTTGTTTGTGGTTTCAATTCTCAAGTGTTCCCAGTTCCTGATTTTAGATTAATTGCCTTTGTTGAATTGTTGTGCACAGAGATGAGTTAGATTTGGATTTCATTATTTCACATGACTAAGCCAATATCCCAAGTTTGTTCATTTTGAGATGAGGCCGAGAAAATTAGGATGCATCTTTAAATGCTATCAAACAAGAAGCTTTCTTGGGTTTGGTTGTCTCTGACCGACCGTATTTCAATTTGTATTTTGATTGCTGAGATGACGTTGTTTAACGTTGGCTGTTCTACTAGATTTGTTTGTTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGCTGAAGAAGGGGGGAAGACCAATGAAGCGATCGAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAACAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAACCCGACAAAAATGGTATTTAATTATGAAAGGGTAAAATGGTATTTTCAGGTCCCAGGTCAAAATTCAAGAAGTACAAACATACTCCTTCTTTTAGCTTCTTGCTTCCCTTTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCAATTTCCATGGACATAACCGAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTATTTGTTTGTTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGCTGAAGAAGGGGGGAAGACCAATGAAGCGATCGAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAACAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA

Coding sequence (CDS)

ATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCAATTTCCATGGACATAACCGAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTATTTGTTTGTTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGCTGAAGAAGGGGGGAAGACCAATGAAGCGATCGAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAACAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA

Protein sequence

MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPPTMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGKTTRIHSAKTLYE
Homology
[Close]
BLAST of CmaCh04G009170 vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-21
Identity = 76/124 (61.29%), Postives = 80/124 (64.52%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKKK+G GA+SMD+TENSVHELPQAMDV                        A  
Sbjct: 1   MAKNRNKKKRG-GAVSMDVTENSVHELPQAMDV-----------------------SAST 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
                   LD KLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ KTTRI SAK
Sbjct: 61  VHKPASGALDLKLKK-GRPMKRSKNVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAK 99

[Close]
BLAST of CmaCh04G009170 vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-19
Identity = 75/124 (60.48%), Postives = 82/124 (66.13%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKN+NKK+  SGAISMDITEN+ HELPQAMDV                      +  P 
Sbjct: 1   MAKNKNKKR--SGAISMDITENTAHELPQAMDVSESA------------------VHKPA 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
           + +     L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAK
Sbjct: 61  SGA-----LNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAK 98

[Close]
BLAST of CmaCh04G009170 vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.9e-19
Identity = 75/124 (60.48%), Postives = 82/124 (66.13%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKN+NKKK+ SGAISMDITEN+  ELPQAMDV                      +  P 
Sbjct: 1   MAKNKNKKKR-SGAISMDITENTAQELPQAMDVSESA------------------VHKPA 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
           + +     L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAK
Sbjct: 61  SGA-----LNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAK 99

[Close]
BLAST of CmaCh04G009170 vs. ExPASy TrEMBL
Match: A0A6A6MLZ5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKKKK +GA+SMDITE +V ++PQAMD  S   + +                   
Sbjct: 1   MAKNRNKKKK-NGAVSMDITEPTVSDVPQAMDT-SESVVQK------------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRK----TKAISKTEQSAEKILKNQGKTTRIHSAK 120
             +  +P  +RK+K  GRPMKRSKNVRK     KAISK EQS EK+LKN+ KT R  SAK
Sbjct: 61  -SASGFP--NRKVK--GRPMKRSKNVRKMKAVAKAISKNEQSVEKVLKNESKTARTQSAK 98

[Close]
BLAST of CmaCh04G009170 vs. ExPASy TrEMBL
Match: A0A445IB81 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_032031 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KKK +G +SMD T+ SV E PQAMD+     +N +   +              
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQPQAMDISESGVLNTVTGAT-------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                    + K+K+ GRPMKRSKNVRK KA++K     E+S  K+ KN+ K  R+ SAK
Sbjct: 61  ---------NMKMKQKGRPMKRSKNVRKMKAVAKAVSANEKSVAKLSKNESKKNRVQSAK 101

[Close]
BLAST of CmaCh04G009170 vs. NCBI nr
Match: KAG7031381.1 (hypothetical protein SDJN02_05421 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 95/120 (79.17%), Postives = 98/120 (81.67%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKKKKGSGAISMDITE      P     L+       LA  + LF IALFLFAPP
Sbjct: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLT-------LAALLDLFGIALFLFAPP 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGKTTRIHSAKTLYE 120
           TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQG+TTRIHSAKTLYE
Sbjct: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGETTRIHSAKTLYE 113

[Close]
BLAST of CmaCh04G009170 vs. NCBI nr
Match: XP_023538255.1 (uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 5.1e-25
Identity = 82/124 (66.13%), Postives = 87/124 (70.16%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKKKKGSGAISMDITENSVHELPQAMDV                      +  P 
Sbjct: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVSESA------------------VHKPA 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
           + +     L+ KLKKGGR MKRSKNVRKT    KAISK+EQSAEKILKNQGKTTRIHSAK
Sbjct: 61  SGA-----LNLKLKKGGRLMKRSKNVRKTKAMAKAISKSEQSAEKILKNQGKTTRIHSAK 101

[Close]
BLAST of CmaCh04G009170 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-21
Identity = 76/124 (61.29%), Postives = 80/124 (64.52%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKKK+G GA+SMD+TENSVHELPQAMDV                        A  
Sbjct: 1   MAKNRNKKKRG-GAVSMDVTENSVHELPQAMDV-----------------------SAST 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
                   LD KLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ KTTRI SAK
Sbjct: 61  VHKPASGALDLKLKK-GRPMKRSKNVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAK 99

[Close]
BLAST of CmaCh04G009170 vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-19
Identity = 75/124 (60.48%), Postives = 82/124 (66.13%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKN+NKK+  SGAISMDITEN+ HELPQAMDV                      +  P 
Sbjct: 1   MAKNKNKKR--SGAISMDITENTAHELPQAMDVSESA------------------VHKPA 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
           + +     L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAK
Sbjct: 61  SGA-----LNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAK 98

[Close]
BLAST of CmaCh04G009170 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 75/124 (60.48%), Postives = 82/124 (66.13%), Query Frame = 0 

Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKN+NKKK+ SGAISMDITEN+  ELPQAMDV                      +  P 
Sbjct: 278 MAKNKNKKKR-SGAISMDITENTAQELPQAMDVSESA------------------VHKPA 337

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
           + +     L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAK
Sbjct: 338 SGA-----LNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAK 376

The following BLAST results are available for this feature:
BLAST of CmaCh04G009170 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G009170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BUB24.8e-2161.29uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=... [more]
A0A6J1J4F82.6e-1960.48uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316... [more]
A0A6J1EMH05.9e-1960.48uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC1114358... [more]
A0A6A6MLZ51.1e-1250.00Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1[more]
A0A445IB813.1e-1243.55Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_032031 PE=4 SV=1[more]
BLAST of CmaCh04G009170 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031381.11.7e-3679.17hypothetical protein SDJN02_05421 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023538255.15.1e-2566.13uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo][more]
XP_008452291.19.9e-2161.29PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo][more]
XP_022985277.15.4e-1960.48uncharacterized protein LOC111483316 [Cucurbita maxima][more]
KAG6577394.11.2e-1860.48Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm... [more]
BLAST of CmaCh04G009170 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..120
NoneNo IPR availablePANTHERPTHR36385OS07G0562900 PROTEINcoord: 71..120
coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009170.1CmaCh04G009170.1mRNA