CmaCh04G006650 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G006650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin domain-containing protein
Location	Cma_Chr04: 3393153 .. 3396749 (-)
RNA-Seq Expression	CmaCh04G006650
Synteny	CmaCh04G006650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGTGAGGTTCACTTCGCTTCTTTGATTCTTTCTTTCATTATTGGAGATTTTTTGTTCTATGTTTGGCTGCTGTGTTGGCTATGAGGAATATAGATGATAATCAATGCAAGTTGATTTGTTGGGAGAGCGGGAGTGTTGGTCTTCTGGTATTGAATTTGTTCGGAATGGATTGGATTGGTCTTGATTTTCTTTGTTTGTTGCGTCTTTTTTCTTGATTTTCATTCTGCGGTTATCGCGTTGCTCGATTGTGTGCGTTTGTTTGTTTGAGACTATGACAGTGGTTCGAAGCCTCGAGATTCTTTACCTTTACTTGCATTAAATAGGATAGTAAATTTTCAATTTAGATAATTGAGTTAAATTGTGGAAATAATTTCATCCTTCATTTATTTTGAGAATGATGGATTTCTTTTAAAGATTGATTAGAATTACTGCTGGCGTATTTATTGACAGTTGCTGCTGGTGATTCAAATTCTCTAGTGATTCTTTCAGTTTCGGATCAATGAAGTCATCATGAATTGCATTCAAAATCTTGGCATGTTTGTGACTAAAATTTCAGCAACTAACATATGAATGGACGGTATCTAATATTTCTACTTTATACTGCAATCAAAACGAAAATTTGTAGAAGCTCTGTTACAACATGCTAGTTTGCGGGATGTCAATCGTCTTTTGACTCTTTTCTAATTTGCAAAATGGCTAAGGTATCGCTGTACATGAATTCCTCCCTTCCCCGATCTCTATTCTCATAACAAATTCTTAAAATTAACAGGAATTGCTGAATTCTTGTATAATAGGAAGAAAACACGTCTGAGGATACTGAAACGAAAGAAAGCACTTGAAGAAAGTAGAGAAAATGAAAGAATAAATAGGAAAATTTTAGGACGAAGCTTTCTAATTCTCCTTGTGTTGTTAAAGTACTGAAGGTTTGGGAATTTTATTTGAACTTTTCAAGGCTTCCCTTTGTTATCAGTGCTGCTACACTTGAACATGGTTTAGTTGGCTTGTACTTTATTCAAGCCATTTGACATATGACTGAAACTGCTTCTTTGTGTAGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACAGCACCTCACTATGGTGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGGTTAGCTGATCAAAGGAATTACTGAGAGTTTAGCTAATTAGGAATAAGCCTTGCAGATTATATCAAGTATTTCATGATTTCTGATTTCAGAATCTACTTTCTTTCTCGATAGAAATGTAAAACTACGGATAGATGACCATCACATTCATGGAAAAGGGTGAATACTGTAGTTGCAGGGGATCCAATGAAGGTTGGGACGAATTATCTCTTGGATATGACAATGATGTCATTCACAGCTGTATGCACAATTATTGGACCTTTTTCCAATTTCTAGGATCCTACCATTTGTCTTCCCTGTTTCCTAATAAACTAAGTTCTCGGTTTGGGAGATAAGGTTTCCTATTTTTGTGCCGATTACAGATTGCCGTTACCAACATCCAAGAATTTCACTTCACATGTAGGCTTTTCCAATTATTTCATTTCAGTTTGTGCCCATTTCGAAGGGGGATACTTCTGGGAAGAAATGTGCTTCTGAGAGTTCGTTAAAGTTTTTGGTCCAATTGATTTAGTTTTTTTTATTACTTAGTTAGCCAATAAGTATTTTATGAATATTGGCTTTTAGTTCTTGAATGGATACATCTTTAGAATCAGTTTCAATTGTAAGCCAAGATTTCTTTTGAGGACTCTCTATGAGAGCTTAGGTTACACCAAAATGATTTTCTTTTTTCTTATGCTTAGAGTACTCATTATGTGATTTTACCTAGGATTATGGAACTTGTAACTATAGAAACTTGTGTCTGGACTTAATCTTTTGTTGGTTTATGTTTTGGGCCGGCTTCTTGTTATTTTGTTTTCTTTCTTCGTGTTTCTTTTCCCTTTTCTTGTGCCTTTTAGTGGCCTTTAGTATTTTCGTAAAAAAGCTTCCTGAAAGCCCATTGATAATCGCCACAAAATTTTGAAATGGCCTGCCTCATTCGAATTTCTCTTCGCTCATAATGTATCTTGCAATCTGTTATTGATTTGAGCTAAGAGACATTAGTTATTATTTCTCTCCAACCTTCACCTTTCACTTCCCCCGACTGATTTTTCCCCATTGCATACTAGATTGAAAGCAATGCTATTTGTAGTTCAAGGTCAAACTCTTTTGGCCCGAACTTTGTCCTCGACTACATTCTTGCTGTTTGATGCAAACTTTAACCTTTATGAAGGTTTCTGATACACATCACTATTTTCTGTTAATTTTCACTATCTTATTAAATGCTTTTTTCCAAGAGAAAACAACTTGATCTTAGTTGCCAATTGAAACGTTAGATCCCCAGGTATATGGTTGTTGGAAATAGCCAAATAAAGTGTCAGTTTCAAAGATCCTACAATCTTCTACTGGTCAATCCTCTAACGTATCTCCCCAAGATATAGAGTGAGGGTATCTCTTTGGAATCCCGAACAAATATGGAAATGATGTAGGATTTTGTACCAAAATCACAATTCACAAGAGAAAAAGATGATTGACTAATTCACAGGCCTTCCAATAAAGAGAACACTAATATAATGAGAGGGCACCATTATTTAGTTTTCTGAAAGTCAATGTATGAAAAGGATCATAAGGCAGGCTTCTAATCGAGAAAATTAGGGAGGATCAAAGACAAATCATGAGAAACATGAATAATAAAGACTGCCAAGTCTTTCTTCTTTGATTTTAAATTGGCGTCTATATGTAACTCACCTATTGGTGTTTGAATTTTTTACTCCGTTATTTCATTCATCAATTAAATTTGTCTCTTCTCTAGAAAAAGACTTACCCAAACAACCGTGATTTGAAAATTGTGTTAAAAGACATTGAAAGGTTTGGACTTCTAAGATGAGTTAGAAGTGAGCACAATTTCTAAAATAGCATTCTAGAACTTCCAATTCACCTAAAAGTATTTCAATGTCTCTTAGAGGAAAGGAAGATCAAGCCTCTTCAGTCTCTATCTTCTTTTATTTTATTTCCATCCTTGGGCTACTACACACCCTTCAAGTCTTCAACATTGACCTCACCTTTCTTATACATTACTTTGTCCTTCACGGCCTGCTTACTAAAATTTACCAACAATTTTCGTTGATATCAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTCCATACCATTGCTTCATTCAAGAAATTATGATATGTTATTTTAGTTGAACCATCAATATCATTTTTATCATTGCCCAATCTTATTGCAGGTGCCAAATATGAACTGCCCAAATATGTTTTGAGTGAACCAACCAATTTGATTCGTGACAGTTCATAA

mRNA sequence

ATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACAGCACCTCACTATGGTGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTGCCAAATATGAACTGCCCAAATATGTTTTGAGTGAACCAACCAATTTGATTCGTGACAGTTCATAA

Coding sequence (CDS)

ATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACAGCACCTCACTATGGTGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTGCCAAATATGAACTGCCCAAATATGTTTTGAGTGAACCAACCAATTTGATTCGTGACAGTTCATAA

Protein sequence

MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPKYVLSEPTNLIRDSS

Homology

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BLAST of CmaCh04G006650 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.7e-21
Identity = 62/149 (41.61%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 2   GCVG--SSQTNGDGS---------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAPHY 61
           GCVG   ++T G GS          + ++K KP WK   P+T  QL   RDEFWDTAP +
Sbjct: 3   GCVGRERAETRGRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAF 62

Query: 62  GGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNADL 121
            GR                   +EIWDAL+AAA A    +  LAQAI+D A + + +  L
Sbjct: 63  EGR-------------------KEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSL 122

Query: 122 TVCYDERGAKYELPKYVLSEPTNLIRDSS 135
           T CYDE G +Y+LP Y L+ P NLI + S
Sbjct: 123 TECYDELGNRYQLPVYCLAPPVNLISERS 132

[Close]

BLAST of CmaCh04G006650 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.8e-21
Identity = 62/151 (41.06%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 2   GCVGSS-------QTNGDGS------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAP 61
           GCVGS          N DG+       + +++ KP WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGSHHDSSGSLNENSDGTGVALGRNQPLKREKPKWKSDYPMTDGQLRSKRDEFWDTAP 62

Query: 62  HYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNA 121
            + GR                   +EIWDAL+AAA+A    +  LAQAIID A + + + 
Sbjct: 63  AFEGR-------------------KEIWDALKAAAQAFESNDHELAQAIIDGASITLPHG 122

Query: 122 DLTVCYDERGAKYELPKYVLSEPTNLIRDSS 135
            LT CYDE G +Y+LP Y LS P N+I + S
Sbjct: 123 ALTECYDELGNRYQLPVYCLSPPVNMIEEKS 134

[Close]

BLAST of CmaCh04G006650 vs. ExPASy Swiss-Prot
Match: Q640W6 (Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-20
Identity = 62/151 (41.06%), Postives = 79/151 (52.32%), Query Frame = 0


Query: 2   GCV-------GSSQTNGDGS------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAP 61
           GCV       GS   N DG+       + ++K KP WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGTHHDSSGSLNENSDGTGVALGRNQPLKKDKPKWKSDYPMTDGQLRSKRDEFWDTAP 62

Query: 62  HYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNA 121
            + GR                   +EIWDAL+AAA A    +  LAQAIID A + + + 
Sbjct: 63  AFEGR-------------------KEIWDALKAAAHAFESNDHELAQAIIDGASITLPHG 122

Query: 122 DLTVCYDERGAKYELPKYVLSEPTNLIRDSS 135
            LT CYDE G +Y+LP Y L+ P N+I + S
Sbjct: 123 ALTECYDELGNRYQLPVYCLAPPINMIEEKS 134

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BLAST of CmaCh04G006650 vs. ExPASy Swiss-Prot
Match: Q6PGH0 (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-20
Identity = 62/151 (41.06%), Postives = 79/151 (52.32%), Query Frame = 0


Query: 2   GCV-------GSSQTNGDGS------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAP 61
           GCV       GS   N DG+       + ++K KP WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGAQHDSSGSLNENSDGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAP 62

Query: 62  HYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNA 121
            + GR                   +EIWDAL+AAA A    +  LAQAIID A + + + 
Sbjct: 63  AFEGR-------------------KEIWDALKAAAHAFESNDHELAQAIIDGANITLPHG 122

Query: 122 DLTVCYDERGAKYELPKYVLSEPTNLIRDSS 135
            LT CYDE G +Y+LP Y L+ P N+I + S
Sbjct: 123 ALTECYDELGNRYQLPVYCLAPPINMIEEKS 134

[Close]

BLAST of CmaCh04G006650 vs. ExPASy Swiss-Prot
Match: Q6GL38 (Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-20
Identity = 61/152 (40.13%), Postives = 79/152 (51.97%), Query Frame = 0


Query: 2   GCVG-------SSQTNGDGSTKK-------IRKPKP-WKHPQPITRSQLTQLRDEFWDTA 61
           GCVG        SQ+   G  +K       ++K +P WK   P+T  QL   RDEFWDTA
Sbjct: 3   GCVGRPQGESQRSQSRASGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTA 62

Query: 62  PHYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQN 121
           P + GR                   +EIWDAL+AAA A    +  LAQAI+D A + + +
Sbjct: 63  PAFEGR-------------------KEIWDALKAAAFAVEANDHELAQAIVDGASITLPH 122

Query: 122 ADLTVCYDERGAKYELPKYVLSEPTNLIRDSS 135
             LT CYDE G +Y+LP Y L+ P NLI + S
Sbjct: 123 GSLTECYDELGTRYQLPVYCLAPPVNLIMERS 135

[Close]

BLAST of CmaCh04G006650 vs. ExPASy TrEMBL
Match: A0A6J1J7G7 (ubiquitin domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481944 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 8.7e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
           FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK
Sbjct: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 134

[Close]

BLAST of CmaCh04G006650 vs. ExPASy TrEMBL
Match: A0A6J1J725 (ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481944 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.0e-56
Identity = 115/134 (85.82%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN       
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                       EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK
Sbjct: 61  ------------EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 115

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 115

[Close]

BLAST of CmaCh04G006650 vs. ExPASy TrEMBL
Match: A0A6J1FQA3 (ubiquitin domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447800 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.0e-56
Identity = 115/134 (85.82%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN       
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                       EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK
Sbjct: 61  ------------EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 115

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 115

[Close]

BLAST of CmaCh04G006650 vs. ExPASy TrEMBL
Match: A0A6J1CN58 (ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012801 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.1e-53
Identity = 109/134 (81.34%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGC GSS+TNGDGSTK+IRKPKPWKHPQPITRSQL QLRDEFWDTAPHYGGRN       
Sbjct: 1   MGCAGSSRTNGDGSTKRIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRN------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                       EIWDALRAAAEAE SLAQAIIDSAGVIVQNADLTVCYDERGAKYELP 
Sbjct: 61  ------------EIWDALRAAAEAEXSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPN 115

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 115

[Close]

BLAST of CmaCh04G006650 vs. ExPASy TrEMBL
Match: A0A6J1ETK8 (ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111437602 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.7e-52
Identity = 106/134 (79.10%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGC GSSQTNGDGS KKIRKPK WKHPQPITRSQL QLR+EFWDTAPHYGGR        
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGR-------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                      +EIWDALRAAAEAELSLAQAIIDSAGVI+QNADLT+CYDERGAKYELP 
Sbjct: 61  -----------KEIWDALRAAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPN 115

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 115

[Close]

BLAST of CmaCh04G006650 vs. NCBI nr
Match: XP_022983333.1 (ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita maxima] >XP_023527299.1 ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6600497.1 Ubiquitin domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.3 bits (713), Expect = 1.8e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
           FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK
Sbjct: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 134

[Close]

BLAST of CmaCh04G006650 vs. NCBI nr
Match: KAG7031138.1 (Ubiquitin domain-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 7.8e-59
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI
Sbjct: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 114
           FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG
Sbjct: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 177

[Close]

BLAST of CmaCh04G006650 vs. NCBI nr
Match: XP_022942916.1 (ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022983339.1 ubiquitin domain-containing protein 1-like isoform X2 [Cucurbita maxima] >XP_023527305.1 ubiquitin domain-containing protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.6 bits (579), Expect = 6.2e-56
Identity = 115/134 (85.82%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN       
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                       EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK
Sbjct: 61  ------------EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 115

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 115

[Close]

BLAST of CmaCh04G006650 vs. NCBI nr
Match: XP_022142761.1 (ubiquitin domain-containing protein 1-like [Momordica charantia] >XP_022142762.1 ubiquitin domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 217.2 bits (552), Expect = 8.4e-53
Identity = 109/134 (81.34%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGC GSS+TNGDGSTK+IRKPKPWKHPQPITRSQL QLRDEFWDTAPHYGGRN       
Sbjct: 1   MGCAGSSRTNGDGSTKRIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRN------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                       EIWDALRAAAEAE SLAQAIIDSAGVIVQNADLTVCYDERGAKYELP 
Sbjct: 61  ------------EIWDALRAAAEAEXSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPN 115

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 115

[Close]

BLAST of CmaCh04G006650 vs. NCBI nr
Match: XP_038882682.1 (ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882701.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882708.1 ubiquitin domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 5.4e-52
Identity = 108/134 (80.60%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGC GSSQTNGDGS KKIRKPK WKHPQPITRSQL QLRDEFWDTAPHYGGR        
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGR-------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                      +EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLT+CYDERGAKYELP 
Sbjct: 61  -----------KEIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPN 115

Query: 121 YVLSEPTNLIRDSS 135
           YVLSEPTNLIRDSS
Sbjct: 121 YVLSEPTNLIRDSS 115

[Close]

BLAST of CmaCh04G006650 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-49
Identity = 92/129 (71.32%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGC GS+Q+  DGS KKIRKPKPWKH QPIT+++L +LR+EFWDTAPHYGGR        
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGR-------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPK 120
                      +EIWDALRAAAEA++SLAQAI+DSAGVIVQN DLTVCYDERGAKYELPK
Sbjct: 61  -----------KEIWDALRAAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPK 110

Query: 121 YVLSEPTNL 130
           YVLSEPTNL
Sbjct: 121 YVLSEPTNL 110

[Close]

BLAST of CmaCh04G006650 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-44
Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGST--KKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVS 60
           MGC+GSSQ   +G    KKI KPKPW H +PITR+QLT +R+EFWDT+PHYGG+      
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQ------ 60

Query: 61  NIFVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYEL 120
                        REIW+ALRAAAEA+L LAQ I+DSAGVIVQN DLT+C+DERGA+YEL
Sbjct: 61  -------------REIWEALRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYEL 115

Query: 121 PKYVLSEPTNLIRD 133
           P+YVLSEPTNLIR+
Sbjct: 121 PRYVLSEPTNLIRE 115

[Close]

BLAST of CmaCh04G006650 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-40
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60
           MGC  SS+T  +G  +KIR+PK WKHPQPI+R +LTQ+R+EFWDTAPHYGG+        
Sbjct: 1   MGC-SSSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGK-------- 60

Query: 61  FVPVLKSSWFFREIWDALRAAAEA-ELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELP 120
                      +EIWDALRAAAE  +LSLAQ I++SAGVIVQN DLT+CYDE+G+KYELP
Sbjct: 61  -----------KEIWDALRAAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELP 111

Query: 121 KYVLSEPTNLI 131
           KYVL +P+NLI
Sbjct: 121 KYVLRDPSNLI 111

The following BLAST results are available for this feature:

BLAST of CmaCh04G006650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4V8W7	6.7e-21	41.61	Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1	[more]
Q6DG43	8.8e-21	41.06	Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1	[more]
Q640W6	2.6e-20	41.06	Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV...	[more]
Q6PGH0	2.6e-20	41.06	Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=...	[more]
Q6GL38	4.4e-20	40.13	Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=...	[more]

BLAST of CmaCh04G006650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7G7	8.7e-72	100.00	ubiquitin domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1J725	3.0e-56	85.82	ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A6J1FQA3	3.0e-56	85.82	ubiquitin domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CN58	4.1e-53	81.34	ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1ETK8	7.7e-52	79.10	ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of CmaCh04G006650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983333.1	1.8e-71	100.00	ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita maxima] >XP_023...	[more]
KAG7031138.1	7.8e-59	100.00	Ubiquitin domain-containing protein 2, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022942916.1	6.2e-56	85.82	ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022983339.1 ...	[more]
XP_022142761.1	8.4e-53	81.34	ubiquitin domain-containing protein 1-like [Momordica charantia] >XP_022142762.1...	[more]
XP_038882682.1	5.4e-52	80.60	ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 u...	[more]

BLAST of CmaCh04G006650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53400.1	7.8e-49	71.32	Ubiquitin domain-containing protein	[more]
AT5G45740.1	3.4e-44	63.43	Ubiquitin domain-containing protein	[more]
AT1G16960.1	1.0e-40	61.83	Ubiquitin domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032752	DC-UbP/UBTD2, N-terminal domain	PFAM	PF16455	UBD	coord: 72..132 e-value: 6.8E-21 score: 74.3 coord: 15..53 e-value: 3.0E-7 score: 30.5
IPR038169	DC-UbP/UBTD2, N-terminal domain superfamily	GENE3D	1.20.225.20		coord: 71..123 e-value: 9.9E-16 score: 59.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR13609:SF25	BINDING PROTEIN, PUTATIVE-RELATED	coord: 1..53 coord: 72..131
IPR039869	Ubiquitin domain-containing protein 1/2	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 1..53
IPR039869	Ubiquitin domain-containing protein 1/2	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 72..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006650.1	CmaCh04G006650.1	mRNA