CmaCh04G005980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G005980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NDR1/HIN1-like protein 12
Location	Cma_Chr04: 3021132 .. 3023486 (-)
RNA-Seq Expression	CmaCh04G005980
Synteny	CmaCh04G005980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCTGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGACGATTAGTGTCATAGGCGCTCATCTCGATAACTTCCAGAACGACATCGTCGGCCGCCTCGAGGTTCAGTTAACGATCCTCGTCGAGGCGGAAAATGATAACGCGAAGGCGCATGCGAGTTTCTCCGATACGAGTTTGTTCCTGAGTTTTCTAGGGCTAAACATCGCGGAGATTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTGAGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGCGTTGAAGACGGATCTGATCCAGTTCGATTTGAACAGGAACACGAGAGTTCAATGGTGAGTTGGATTGTTTGGATCCGTGAAATTCGTATGCCAAATTCATTGCGGGCTTAAATTTCATCATTCCAATGGAACGTACTTGATTTCGCCTTGTAGTTCTCGAGCGAAATGATTTCTCTGTTCTTGGGATAATTTTAGTACGGAACAATTTCATGAACAATTTCCAATCTATTCTTGGGAAATTAGACAATTTGTAGTGCGTATTGAGAATTCTTGATAGATTTAGATTAGCGAAATTGAGTTATATAATTTGTAAAGTTATTTGAGTTATCTCCAATTTGAATTTAGTCAATATTAAATTAAATAGTTTGTTTTTAGTGACATTATTTATGTTTTTTATATAAATTATAATAACGACAAAGTGAGTAATTTTGTTGTATTAAAGAAAAAAAATAATTGAGTATAATTATTAATAGATCCAATAATTAAATTTTCAAAGAATAATTGAGATGATTTTATTAATGAAATAATAAATAAATAAAAAATCCCAGCTTGATTTTGTTGCCTACGATTGGATGCTACAGACTGGAAATTCATAATGATTTTATTCAATTTTAATGCCATTATTGAATAATTAACGGAAACTTTTTGTAAAATAATTTTTTTTTAAAATTATTGATTTTCAGGACCAAACAATATAGTTAGCGGTAAAATATGCTGTCAAAAGTTTTAATTTGTAGGGTAAATTATATATTCGGTTTAAGCTTGATTTTTATATTCGCTCGATTTTCTTGAATATAAATTTAGTTTTAGTTGATATGGGATAATTTTATGGGCGATTTTGTTGATATGTTTAAAAGATTTGATTTTGACATTAGAGAATAAAATATTAGAAAGACAAAAAGCTAATTCGAGCATGCTCGAGACAGGACACTACTATCTCAAAAGTTCGTAATTTTATCTTCATTTCATAATTACCGAACTAAAAATGATATATATATTGTAAAGGAGGTCAAATATGTCGTGCCGTTAGGCTAAAAAGGCAAATTAGAGCAGCGGCCATTGCCCCGAAACGAATAAATGTGGTCTCCTGATAAGAAGTTTACATCAAAATCCAGGTTTAATATATTCCCTTACCCTTTTCTATTTTCGTTCTTTTAATTATATTCATAATTTAAATACTTTTTAGAGAAATTTAAGCAATTTAAAATTTTATTTTGATTGAGGATGTACGTCTTAATTAATCATGTGATACTCAGAGTAAATGAGGGATATATGAACGAACTAAGATCATATTCAAATGAGAGCAATCATGAAGATAGAATGACTAAAAAAGTCTTTGAATTGAAAGTCATTACCTATACTATATTTAATATGAACTTGAGAATAATTTAGAATATTATTATTTAAGTATGTGTTTTTCTTTTTTAATTTAAAAAATCTTTTTAATTGAAAATTAAAACTAATTTAGATATTAAATTTATAATTCAACTAATAATTTGAAAGGTAAGATTTGCTGGAAGATTTTGGAGCCGGGAAGAAATAAGGTCACAGTGGCTCTCCTCTGTTCCATAATATAGTGTAGCGACGATCATTGAGTGCGGGTGGACCCCCCAATGTTTCAGCCTATCACAGCCGTTAGATTGATGCAGCTTCTCAGTTGGCGGTAGACACGTGTCCTCATCGTCTTCGATTCTGGTTGCTATAAAGGCCCCTGAACCGGCCATGGTTCTTCTCGCTCTGCATAGGGTTTAATCTCCGTAGTCTCTCTGTTTGCCTCTCATTTCCGTATCCTTAATCTTTCGCGGGCAATATCTCGGCGTTGTTTCTTCTCAGTTATACACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCTTCGCTCCGGTTTGCGTTTGCCGACGGCCGGCATCTCCTAA

mRNA sequence

ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCTGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGACGATTAGTGTCATAGGCGCTCATCTCGATAACTTCCAGAACGACATCGTCGGCCGCCTCGAGGTTCAGTTAACGATCCTCGTCGAGGCGGAAAATGATAACGCGAAGGCGCATGCGAGTTTCTCCGATACGAGTTTGTTCCTGAGTTTTCTAGGGCTAAACATCGCGGAGATTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTGAGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGCGTTGAAGACGGATCTGATCCAGTTCGATTTGAACAGGAACACGAGAGTTCAATGTTATACACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCTTCGCTCCGGTTTGCGTTTGCCGACGGCCGGCATCTCCTAA

Coding sequence (CDS)

ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCTGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGACGATTAGTGTCATAGGCGCTCATCTCGATAACTTCCAGAACGACATCGTCGGCCGCCTCGAGGTTCAGTTAACGATCCTCGTCGAGGCGGAAAATGATAACGCGAAGGCGCATGCGAGTTTCTCCGATACGAGTTTGTTCCTGAGTTTTCTAGGGCTAAACATCGCGGAGATTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTGAGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGCGTTGAAGACGGATCTGATCCAGTTCGATTTGAACAGGAACACGAGAGTTCAATGTTATACACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCTTCGCTCCGGTTTGCGTTTGCCGACGGCCGGCATCTCCTAA

Protein sequence

MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLDNFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSSVQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQCYTPAVSNSLGAGRELLRSGLRLPTAGIS

Homology

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BLAST of CmaCh04G005980 vs. ExPASy TrEMBL
Match: A0A6J1IYB1 (uncharacterized protein LOC111481740 OS=Cucurbita maxima OX=3661 GN=LOC111481740 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.1e-83
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS
Sbjct: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ
Sbjct: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. ExPASy TrEMBL
Match: A0A6J1FWU7 (uncharacterized protein LOC111447688 OS=Cucurbita moschata OX=3662 GN=LOC111447688 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.3e-80
Identity = 156/162 (96.30%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQN+I GRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAE+VADPFDVRKN S
Sbjct: 61  NFQNEIAGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNGS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           VQFHYAVNSI IPLNPEQMEEVDFALKTDLIQFDLN NTRVQ
Sbjct: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. ExPASy TrEMBL
Match: A0A6J1C468 (uncharacterized protein LOC111008115 OS=Momordica charantia OX=3673 GN=LOC111008115 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.7e-65
Identity = 128/162 (79.01%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPP+LIS+AKRRTHPL+WFAAVLCT++SIAVII G+ VF+GYLVIHPRIPTISVIGAHLD
Sbjct: 1   MPPRLISDAKRRTHPLVWFAAVLCTILSIAVIIGGIVVFVGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
            FQ D+ GRLEVQLTI+VEAENDNAKAHASFSDTS FLSFLG+ IA +VADPF VRKNSS
Sbjct: 61  GFQIDVAGRLEVQLTIVVEAENDNAKAHASFSDTSFFLSFLGIRIARLVADPFAVRKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
            +F YA+ S  IPLNPEQMEE D+ALK+DL +FDL  NTRVQ
Sbjct: 121 HKFQYAIASSSIPLNPEQMEEADYALKSDLSRFDLKGNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. ExPASy TrEMBL
Match: A0A5D3D1V8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002470 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.2e-61
Identity = 123/162 (75.93%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLIS+AKRRTHPL+W AA+LCT+VSIAVII G+ VFIGYLVIHPRIPTIS++ AHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQ DI GRLEVQLTI+VEA+NDNAKAHASFSD+S FL FL + IA++VADPF+V+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           ++FHYAV S  IPLNPEQME VD+ LK DL  F L  NTRVQ
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. ExPASy TrEMBL
Match: A0A0A0KX91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.2e-61
Identity = 123/162 (75.93%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLIS+AKR THPL+W AA+LCT+VSIAVII G+ VFIGYLVIHPRIPTIS++ AHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQ DI GRLEVQLTI++EA+NDNAKAHASFSD+S FL FLG+ IA++VADPF+VRKNSS
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           ++F YAV S  IPLNPEQME VD  LK DL +FDL  NTRVQ
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. NCBI nr
Match: XP_022983092.1 (uncharacterized protein LOC111481740 [Cucurbita maxima])

HSP 1 Score: 317.4 bits (812), Expect = 8.5e-83
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS
Sbjct: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ
Sbjct: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. NCBI nr
Match: XP_022942740.1 (uncharacterized protein LOC111447688 [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 156/162 (96.30%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQN+I GRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAE+VADPFDVRKN S
Sbjct: 61  NFQNEIAGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNGS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           VQFHYAVNSI IPLNPEQMEEVDFALKTDLIQFDLN NTRVQ
Sbjct: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. NCBI nr
Match: KAG7031080.1 (hypothetical protein SDJN02_05119, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.4 bits (773), Expect = 2.8e-78
Identity = 155/162 (95.68%), Postives = 156/162 (96.30%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVI AHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQNDI GRLEV LTILVEA NDNAKAHASFSDTSLFLSFLGLNIAE+VADPFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           VQFHYAVNSI IPLNPEQMEEVDFALKTDLIQFDLN NTRVQ
Sbjct: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. NCBI nr
Match: KAG6600429.1 (hypothetical protein SDJN03_05662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301.6 bits (771), Expect = 4.8e-78
Identity = 155/162 (95.68%), Postives = 156/162 (96.30%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVI AHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQNDI GRLEV LTILVEAENDNAKAHASFSDTSLFLSFLGLNIAE+VADPFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVHLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           VQF YAVNSI IPLNPEQMEEVDFALKTDLIQFDLN NTRVQ
Sbjct: 121 VQFDYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. NCBI nr
Match: XP_023526921.1 (uncharacterized protein LOC111790256 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 4.5e-76
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIP I VIGAHL+
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPMIRVIGAHLN 60

Query: 61  NFQNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSS 120
           NFQNDI GRLEVQLTILVEAENDNAKAHASFSDT LF SFLGLNIAE+VADPFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVQLTILVEAENDNAKAHASFSDTRLFKSFLGLNIAELVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
           VQFHYAVNSI+IPLNPEQMEEVDF LKTDLIQF+LN +TRVQ
Sbjct: 121 VQFHYAVNSIKIPLNPEQMEEVDFVLKTDLIQFNLNGDTRVQ 162

[Close]

BLAST of CmaCh04G005980 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-38
Identity = 81/160 (50.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 3   PKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLDNF 62
           P+L S  +  T P IW AA++C ++SI VI+ G+ VF+GYLVIHPR+P ISV  AHLD  
Sbjct: 2   PRLTS--RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFL 61

Query: 63  QNDIVGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSSVQ 122
           + DIVG L+ QLTI++  ENDNAKAHA F +T   LS+ G  IA + A  F+V K  S+ 
Sbjct: 62  KYDIVGVLQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPEFEVVKEKSMF 121

Query: 123 FHYAVNSIEIPLNPEQMEEVDFALKTDLIQFDLNRNTRVQ 163
             Y V S  IPLNP  M+ VD+A+K D+I F+L   +R +
Sbjct: 122 LPYLVQSYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTR 159

[Close]

BLAST of CmaCh04G005980 vs. TAIR 10
Match: AT3G26350.1 (LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 11  RRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLDNFQNDIVGRL 70
           R T+ + W AA  C +  + +I+ G+ + I YLV  PR P + +  A+L+    D+   L
Sbjct: 167 RETNAMTWSAAFCCAIFWVILILGGLIILIVYLVYRPRSPYVDISAANLNAAYLDMGFLL 226

Query: 71  EVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSSVQFHYAVNSI 130
              LTIL    N + K+   FS  +  L +    IA    +PF V K +S+  +  + S 
Sbjct: 227 NGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANVHLVSS 286

Query: 131 EIPLNPEQMEEVDFALKTDLIQFDL 156
           ++ L   Q  E+   ++T  +  +L
Sbjct: 287 QVQLQATQSRELQRQIETGPVLLNL 311

[Close]

BLAST of CmaCh04G005980 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-07
Identity = 37/145 (25.52%), Postives = 67/145 (46.21%), Query Frame = 0


Query: 11  RRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLDNFQNDIVGRL 70
           +RT P+   A + C ++ I +I++G+ + + YL   PR P   +  A L+    D+   L
Sbjct: 128 KRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVL 187

Query: 71  EVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSSVQFHYAVNSI 130
              L ++V   N + K+   FS     L F    IA    +PF V K  S+   + + S 
Sbjct: 188 NGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSS 247

Query: 131 EIPLNPEQMEEVDFALKTDLIQFDL 156
           ++ +   Q +++   L T  +  +L
Sbjct: 248 QVQIQMIQSQDLQLQLGTGPVLLNL 272

[Close]

BLAST of CmaCh04G005980 vs. TAIR 10
Match: AT4G26490.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 52.0 bits (123), Expect = 6.2e-07
Identity = 39/153 (25.49%), Postives = 64/153 (41.83%), Query Frame = 0


Query: 12  RTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLDNFQNDIVGRLE 71
           RT   IW  A  C + S+ +I   +   I +L I PRIP   +  A+L     D      
Sbjct: 81  RTSLWIWCVAGFCFVFSLLLIFFAIATLIVFLAIRPRIPVFDIPNANLHTIYFDTPEFFN 140

Query: 72  VQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSSVQFHYAVNSIE 131
             L++LV   N N K    F    + L F    IA  V  PF  +K+ +      + S  
Sbjct: 141 GDLSMLVNFTNPNKKIEVKFEKLRIELFFFNRLIAAQVVQPFLQKKHETRLEPIRLISSL 200

Query: 132 IPLNPEQMEEVDFALKTDLIQFDLNRNTRVQCY 165
           + L      E+   L+ + I++++    +V+ +
Sbjct: 201 VGLPVNHAVELRRQLENNKIEYEIRGTFKVKAH 233

[Close]

BLAST of CmaCh04G005980 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-05
Identity = 34/136 (25.00%), Postives = 62/136 (45.59%), Query Frame = 0


Query: 20  AAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLDNFQNDIVGRLEVQLTILVE 79
           A + C ++ I +I++G+ + + YL   PR P   +  A L+    D+   L   L ++V 
Sbjct: 5   ATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVN 64

Query: 80  AENDNAKAHASFSDTSLFLSFLGLNIAEIVADPFDVRKNSSVQFHYAVNSIEIPLNPEQM 139
             N + K+   FS     L F    IA    +PF V K  S+   + + S ++ +   Q 
Sbjct: 65  FTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQS 124

Query: 140 EEVDFALKTDLIQFDL 156
           +++   L T  +  +L
Sbjct: 125 QDLQLQLGTGPVLLNL 140

The following BLAST results are available for this feature:

BLAST of CmaCh04G005980 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G005980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYB1	4.1e-83	100.00	uncharacterized protein LOC111481740 OS=Cucurbita maxima OX=3661 GN=LOC111481740...	[more]
A0A6J1FWU7	7.3e-80	96.30	uncharacterized protein LOC111447688 OS=Cucurbita moschata OX=3662 GN=LOC1114476...	[more]
A0A6J1C468	1.7e-65	79.01	uncharacterized protein LOC111008115 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A5D3D1V8	1.2e-61	75.93	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KX91	1.2e-61	75.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1	[more]

BLAST of CmaCh04G005980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983092.1	8.5e-83	100.00	uncharacterized protein LOC111481740 [Cucurbita maxima]	[more]
XP_022942740.1	1.5e-79	96.30	uncharacterized protein LOC111447688 [Cucurbita moschata]	[more]
KAG7031080.1	2.8e-78	95.68	hypothetical protein SDJN02_05119, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600429.1	4.8e-78	95.68	hypothetical protein SDJN03_05662, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023526921.1	4.5e-76	92.59	uncharacterized protein LOC111790256 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh04G005980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45320.1	3.0e-38	50.63	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G26350.1	2.1e-10	28.28	LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED ...	[more]
AT1G13050.1	4.7e-07	25.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G26490.1	6.2e-07	25.49	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G13050.2	2.0e-05	25.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852:SF9	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 7..163
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 7..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005980.1	CmaCh04G005980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane