CmaCh04G003430 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G003430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 1679427 .. 1680204 (+)
RNA-Seq ExpressionCmaCh04G003430
SyntenyCmaCh04G003430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACCAGAGCATGTTTCGCTGCTTGGAAGATTGTCTTCTTTGCTTTACTTCTCCTTGCCTTCAACGTTTCTGCAAGAACTCTTGTTGGAACTAATGTAGTGGCTAGTATAGCTGGTAAGCTCTCTTTTTTTGGTGATGTCTCTTTTCTTGTTGGAACTAATGTAGTGGCTAGAACTAATGTTATGCTGTGGGAAAAATTTGTGTGACCAGGTGAAAGGGCAGCGGATGCAAATGATGGGAAGGGCACGATGAGATTATTTAATCAAGTGTTGGATAGCGCTTGGAAGGGACACTATAATCCTCCCAACAAGTTCAACCACCAACCTTGAATGTTTGTTTATGTTCATTCCAACATAATTGAATTATTCAAATTTTGATGGGAAGACATCCAGGAGACCTCATTCTATGATTGCACTCTTAACCTAATTTAGTAATCAGCCACTTGTTGATAACGATTCCAGCAATTTCGTGCTCACACAAAGATCCTCCAAGAGCAACCAATATGCGAAATACATGCCAATGCCGGAAAATTCAAGTAGCAAGTAGTTAGTATATTACAGACTGCAAAGCCATGTTAAATCAAATAACGTGTAGACTTAAACATTTAAATTTTCGGTCTGTAATCGTTATTGAATTATATACTAAATATTGAGGTGCTATCATCTCAACAAACTCAGACGATTATAGAAATATTCCACCTTCCATTTGTATATTTGGTTACCTTTAGTTGGTAAGCTATCTCTGTCACTTTGGTCATGTGAGCTGCCTAGG

mRNA sequence

ATGGCTTCCACCAGAGCATGTTTCGCTGCTTGGAAGATTGTCTTCTTTGCTTTACTTCTCCTTGCCTTCAACGTTTCTGCAAGAACTCTTGTTGGAACTAATGTAGTGGCTAGTATAGCTGGTGAAAGGGCAGCGGATGCAAATGATGGGAAGGGCACGATGAGATTATTTAATCAAGTGTTGGATAGCGCTTGGAAGGGACACTATAATCCTCCCAACAAGTTCAACCACCAACCTTGAATGTTTGTTTATGTTCATTCCAACATAATTGAATTATTCAAATTTTGATGGGAAGACATCCAGGAGACCTCATTCTATGATTGCACTCTTAACCTAATTTAGTAATCAGCCACTTGTTGATAACGATTCCAGCAATTTCGTGCTCACACAAAGATCCTCCAAGAGCAACCAATATGCGAAATACATGCCAATGCCGGAAAATTCAAGTAGCAAGTAGTTAGTATATTACAGACTGCAAAGCCATGTTAAATCAAATAACGTGTAGACTTAAACATTTAAATTTTCGGTCTGTAATCGTTATTGAATTATATACTAAATATTGAGGTGCTATCATCTCAACAAACTCAGACGATTATAGAAATATTCCACCTTCCATTTGTATATTTGGTTACCTTTAGTTGGTAAGCTATCTCTGTCACTTTGGTCATGTGAGCTGCCTAGG

Coding sequence (CDS)

ATGGCTTCCACCAGAGCATGTTTCGCTGCTTGGAAGATTGTCTTCTTTGCTTTACTTCTCCTTGCCTTCAACGTTTCTGCAAGAACTCTTGTTGGAACTAATGTAGTGGCTAGTATAGCTGGTGAAAGGGCAGCGGATGCAAATGATGGGAAGGGCACGATGAGATTATTTAATCAAGTGTTGGATAGCGCTTGGAAGGGACACTATAATCCTCCCAACAAGTTCAACCACCAACCTTGA

Protein sequence

MASTRACFAAWKIVFFALLLLAFNVSARTLVGTNVVASIAGERAADANDGKGTMRLFNQVLDSAWKGHYNPPNKFNHQP
Homology
[Close]
BLAST of CmaCh04G003430 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 8.3e-08
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 1  MASTRACFAAWK-IVFFALLLLAFNVSARTLVGTNVVASIAGERAADANDGKGTMRLFNQ 60
          MAS  A F  WK +VFFALLLLAFNVSAR LVGTN+VA    E   + N G+   RL  +
Sbjct: 1  MASPSA-FVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGR---RLIAR 60

Query: 61 VLDSAWKGHYNPP 73
           LD++W G+Y+PP
Sbjct: 61 QLDTSWGGNYSPP 69

[Close]
BLAST of CmaCh04G003430 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 8.3e-08
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 1  MASTRACFAAWK-IVFFALLLLAFNVSARTLVGTNVVASIAGERAADANDGKGTMRLFNQ 60
          MAS  A F  WK +VFFALLLLAFNVSAR LVGTN+VA    E   + N G+   RL  +
Sbjct: 1  MASPSA-FVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGR---RLIAR 60

Query: 61 VLDSAWKGHYNPP 73
           LD++W G+Y+PP
Sbjct: 61 QLDTSWGGNYSPP 69

[Close]
BLAST of CmaCh04G003430 vs. NCBI nr
Match: KAG7030842.1 (MDIS1-interacting receptor like kinase 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MASTRACFAAWKIVFFALLLLAFNVSARTLVGTNVVA 38
          MASTR CFAAWKIVFFALLLLAFNVSAR LVGTNVVA
Sbjct: 1  MASTRPCFAAWKIVFFALLLLAFNVSARNLVGTNVVA 37

[Close]
BLAST of CmaCh04G003430 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 1  MASTRACFAAWKIVFFALLLLAFNVSARTLVGTNVVASIAGERAADANDGKGTMRLFNQV 60
          MAS  A  A  K+ F   LL+A +VSAR L G NVV   A E A   N   G  RL  + 
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIGGSRLIARQ 60

Query: 61 LDSAWKGHYNPP 73
          LD+AW+GHY+PP
Sbjct: 61 LDTAWRGHYSPP 72

[Close]
BLAST of CmaCh04G003430 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 1  MASTRACFAAWKIVFFALLLLAFNVSARTLVGTNVVASIAGERAADANDGKGTMRLFNQV 60
          MAS  A  A  K+ F   LL+A +VSAR L G NVV   A E A   N      RL  + 
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIVGSRLIARQ 60

Query: 61 LDSAWKGHYNPP 73
          LD+AW+GHY+PP
Sbjct: 61 LDTAWRGHYSPP 72

The following BLAST results are available for this feature:
BLAST of CmaCh04G003430 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G003430 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G003430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600178.18.3e-0856.16hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.18.3e-0856.16hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7030842.11.4e-0794.59MDIS1-interacting receptor like kinase 2, partial [Cucurbita argyrosperma subsp.... [more]
KAG6576804.11.0e-0548.61hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.11.1e-0447.22hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh04G003430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G003430.1CmaCh04G003430.1mRNA