CmaCh04G003260 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G003260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	Cma_Chr04: 1605102 .. 1606873 (-)
RNA-Seq Expression	CmaCh04G003260
Synteny	CmaCh04G003260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAAAACACCTCTCTATTTCCCCTCTAAGCCAAAATTCATCATCAAATCGCAGAGCCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTGCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTCGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTACGAATTCTCTTCCATAATTATATAAATTGGAACTTGAACTTCGGAATTGTACTGTTTCCATTTGCGATGGTGGAATTTTCTTTTTCTTGTTGGGGTTTCCAGTAATTGTGTTGTTGATCTGAAACATGTTAGTAGTTAAAATCAGATCCGAAGAGGATTTTTCTTTAAGAAGTGGATTAGGCGAACTGTGATGATGGGTTGAATTTTTTTCAGTTTCTGTTGAAAAAGATTGAAATTATGAAATGAATGATATTATGATCTATGCCTCCTCCATGGCGGTTCTTCAATCACCATTATCAGTCTCATTGTGCATATTTGGAGTGTTAATATAAGGCAACATTTCATAACAATTCATGACTAAGCTAATGTTATGCATTGGATTTAGGGTTTTCCAATCAAAATAAGATGCTAATATCATCCTGGCATTAACTTCCATTTGAAATCTGTAACCTAATGTAGCTGGATTAGATTGGGCAATGTCCATTATATTTATCTCAGAAGTTCTGTTGTTCAGAGTCTGTTATTTAACTCTCATGTTAAAGCTATGGGTTTTACCAAAACCATTATTTTGGAACTTTCTTGATTAAAATCCGTTGTTTAGAGTTCAATGGTTTGATGCTTCAGGCGTATATTTATTGTAAAACGTACTTCATTTCTGGTTAATTATGCCATCAAACTAATACAAAGTGATAGCTCTCTTATGTTTCTAGCACCTTTCATAGTTTCACGTGGACAATATGTTGTGAACTTTTGCTAGTTTTATACCATTGAATTCTTTAATGGTTCTAAATATGGGAAATATATTCTTTGCTTTTCAGCCTATTTTCAGTTAGAAAATTTGATGTCTAATTGATTTGATGAATACAATATCCACAGTTAGGTATTTTCATTTCACTTTTACCACCACAATTAATTGGTTGATGTGCACTTTTGCAGGTTTCTTACCAGAGAATTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCACTTTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATTTGGTATGGTGACCTGAAAAGTCTCAAGTGTCTATTGATTATGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTGTTTTAGCTCAAAGGTAAATGAGATGCTATTGTTGGATCCTAAGAAACACCGTGCCATCAATTTATTAGTTTCTCTGGGCTTTAACTAATCGTGTTCTATGCTCGAAGATCCTTCTGTTTCTC

mRNA sequence

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAAAACACCTCTCTATTTCCCCTCTAAGCCAAAATTCATCATCAAATCGCAGAGCCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTGCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTCGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAATTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCACTTTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATTTGGTATGGTGACCTGAAAAGTCTCAAGTGTCTATTGATTATGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTGTTTTAGCTCAAAGGTAAATGAGATGCTATTGTTGGATCCTAAGAAACACCGTGCCATCAATTTATTAGTTTCTCTGGGCTTTAACTAATCGTGTTCTATGCTCGAAGATCCTTCTGTTTCTC

Coding sequence (CDS)

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAAAACACCTCTCTATTTCCCCTCTAAGCCAAAATTCATCATCAAATCGCAGAGCCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTGCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTCGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAATTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCACTTTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAA

Protein sequence

MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

Homology

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BLAST of CmaCh04G003260 vs. ExPASy Swiss-Prot
Match: F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-42
Identity = 106/196 (54.08%), Postives = 134/196 (68.37%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI  HSP SF+ +PYHL     +    P+F IK Q+ S+ E   ++    +   +SS
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIESDTTEDPSRSKNSSSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
             GFGS +S S+ + K S  AT+   K KGKR+   + RR+PVEKPVF+ E      +EQ
Sbjct: 61  GVGFGSPASSSSPAKKLS-AATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE  DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

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BLAST of CmaCh04G003260 vs. ExPASy TrEMBL
Match: A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 5.9e-101
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CmaCh04G003260 vs. ExPASy TrEMBL
Match: A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.7e-97
Identity = 191/197 (96.95%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQIIHHSPSSFTRKPYHLPK PL+FPSK KFIIKSQ+PSESEKPISKTVDDA VGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CmaCh04G003260 vs. ExPASy TrEMBL
Match: A0A0A0L8E3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.7e-80
Identity = 159/197 (80.71%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI+HHSPSSFT++PYHLP   L+F SKPKFIIKSQ+PSES+KPISK VDDA + TSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVLKYLQNEKIKDEKS 193

[Close]

BLAST of CmaCh04G003260 vs. ExPASy TrEMBL
Match: A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 7.0e-78
Identity = 160/203 (78.82%), Postives = 175/203 (86.21%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVG--- 60
           MALQI+HHSPSSFT+KPYHLP   L+F SKPKFIIKSQ+PSESEKPISK VDDA +    
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  ---TSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS+QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  KPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKLKGDKS 198
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CmaCh04G003260 vs. ExPASy TrEMBL
Match: A0A6J1CH98 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011420 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 7.0e-78
Identity = 169/205 (82.44%), Postives = 175/205 (85.37%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQ--SPSESEKPISKTVDDAAVGT 60
           MALQII HSPSSFTRKPY LP  PL FPSK  F+IKSQ  S SESEK ISK VDDA+V T
Sbjct: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60

Query: 61  ------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV 120
                 SSAQGFGS  +QST  SK SPKAT SKGKQKGKRQRASIIRRSPVEKPVFVG+V
Sbjct: 61  SSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120

Query: 121 DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVS 180
           DEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVSKYLQNEKLKGDKS 198
           LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.5 bits (937), Expect = 2.8e-97
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQIIHHSPSSFTRKPYHLPKTPL+FPSK KFIIKSQ+PSESEKPISKTVDDA VGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363.2 bits (931), Expect = 1.4e-96
Identity = 191/197 (96.95%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQIIHHSPSSFTRKPYHLPK PL+FPSK KFIIKSQ+PSESEKPISKTVDDA VGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: KAG6600161.1 (Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.1 bits (910), Expect = 3.8e-94
Identity = 187/193 (96.89%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQIIHHSPSSFTRKPYHLPK PL+FPSK KFIIKSQ+PSESEKPISKTVDDA VGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLK 194
           YGVSKYLQNEKLK
Sbjct: 181 YGVSKYLQNEKLK 193

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 311.2 bits (796), Expect = 6.3e-81
Identity = 169/203 (83.25%), Postives = 177/203 (87.19%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGT-- 60
           MALQI+HHSPSSFTRKPYHLP   L FPSKPKFII SQ+PSESEKPISK VDDA + T  
Sbjct: 1   MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESEKPISKNVDDAPLATSS 60

Query: 61  ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
               SS QGFGS SSQSTT+SKSSPKA     KQKGKRQRASIIRRSPVEKPVFVG+VDE
Sbjct: 61  KPSSSSPQGFGSSSSQSTTTSKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGKVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKLKGDKS 198
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CmaCh04G003260 vs. TAIR 10
Match: AT5G51545.1 (low psii accumulation2 )

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-43
Identity = 106/196 (54.08%), Postives = 134/196 (68.37%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI  HSP SF+ +PYHL     +    P+F IK Q+ S+ E   ++    +   +SS
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIESDTTEDPSRSKNSSSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
             GFGS +S S+ + K S  AT+   K KGKR+   + RR+PVEKPVF+ E      +EQ
Sbjct: 61  GVGFGSPASSSSPAKKLS-AATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE  DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

The following BLAST results are available for this feature:

BLAST of CmaCh04G003260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KDA6	1.6e-42	54.08	Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1	[more]

BLAST of CmaCh04G003260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBT8	5.9e-101	100.00	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FNA7	6.7e-97	96.95	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0L8E3	5.7e-80	80.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1	[more]
A0A5A7VJY0	7.0e-78	78.82	Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1CH98	7.0e-78	82.44	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of CmaCh04G003260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973018.1	1.2e-100	100.00	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]	[more]
XP_023554492.1	2.8e-97	97.46	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022941727.1	1.4e-96	96.95	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828....	[more]
KAG6600161.1	3.8e-94	96.89	Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_038899637.1	6.3e-81	83.25	protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]	[more]

BLAST of CmaCh04G003260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51545.1	1.1e-43	54.08	low psii accumulation2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	PROTEIN LOW PSII ACCUMULATION 2, CHLOROPLASTIC	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003260.1	CmaCh04G003260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane