CmaCh04G003110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G003110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 1539135 .. 1540562 (-)
RNA-Seq Expression	CmaCh04G003110
Synteny	CmaCh04G003110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACGTATAGGGCTGTTTTTGCAAGCCTATCAGGAGTTGCCAATTGGACCGCTTTAGCCCAGCATTGGTCTTTTAATTGGGCCGGTTGGTCAGGCCCATCAGCCCAATTTGGCAACCTTCCGAAAATTCCGTACGTGGGGATTTTGCCTCGTTCATTCCCATGCTAAGCCATCCAATCGCAGGGAGAGGACAATTTAGAGCCACATTTTCTACGTAACCGCATAAATTATAAATAAAATAAATAAAAAAAAAGGCAGAATTATTTGAAATTAAAAAAAAAAAAAAAGGCTGCTAATAAAGGATGGGAGGTAATTTTATATTATAAAGGATTTAAAAATAAAAATAAAAATAATGGGTAAACCTAATTCGATGGTTCGGTGACTGTTACTTTTACATTTCACCACACACTTCCAAAATGGTAAAACCTCAACCGTTGATTGAAATCTGAAGGGAAGAGCCCACGGTTTTGCCCTAACTCGACTTAACCCTAAGAAATTGATTTTTCCCAAATTGAATACTGGGGGGACAGAATTGCCCTTGTGTGGTCATTAGAATACCGAAAATGCCCTTGGATTAAATTTAAAACTGGGTAATCCACAATAGTGCCCTAATTTGAGATGGGTGAGGGAGGGGGAGAGGTAATCAACGGGCTGTAGCCGGTAAACCCATAGAGTGTGACCGGTTAAATGGATTATAGTGCCCCATTAACCCAAGTTTTGTTTGTGTTGGGTTGAGGAAGTGTAAACTTGTACATCCATCAAGCTTCTGGTCGTATATATTATCGAATTCTTAAAGGCTCTCTCTGTGTTATTTAATTTTGAAGTTTCAATTTGATTCAGAAGCATTTTCTCGTCTGTGAGGAGTTCGGTTTCCGGAGAGGGAAAAAGGGGAAGAAAAACCTAAAACAGAAGAGGAAGAAGAAGAAGAAGAACATTCGAAGAACTTCAATTTTGGTTTTGATTTGCGTATTCTTTCTGTCAAAGGTTGTGAGAGAACAGAATCACAGATTCCTTCTATACTTTCCTCTCTTCTTCATCTTCATTTTTATCCCTTTCTCTTCTTCTTCTTATTCTCCCACTTGTTCATGCTTCACACTTTCTGCTAATTCTGCGACTTCACGATCTTTCCTTAACTCATACCCTTTAATGTAATTTCTGTTTCTTCTTTAATGTTCTTACTTTTTCTTTCTTAATCATCTCGTCTTTTGCTTTATCCGTAAGTAACAATGTTTTCTTTGTGTGTTGTGTTGTGTTTGTGTTTTCAGGATTCTGGTTATGGGGAGGTGATCTGAACAGAGGTTTGGATGGAAATTTTTGCTCTTGGTTTTTCTCTCTTTGGTGTTTTACTATTTTTACGTATATTAGATCTGTCTTTCTCTTGTTGAATGAGCGACTTCTTGTGTAGGAATTTTTATTCTAATCTGA

mRNA sequence

ATGTTGACGTATAGGGCTGTTTTTGCAAGCCTATCAGGAGTTGCCAATTGGACCGCTTTAGCCCAGCATTGGTCTTTTAATTGGGCCGGAGTTCGGTTTCCGGAGAGGGAAAAAGGGGAAGAAAAACCTAAAACAGAAGAGGAAGAAGAAGAAGAAGAACATTCGAAGAACTTCAATTTTGGTTTTGATTTGCGTATTCTTTCTGTCAAAGGATTCTGGTTATGGGGAGGTGATCTGAACAGAGGAATTTTTATTCTAATCTGA

Coding sequence (CDS)

ATGTTGACGTATAGGGCTGTTTTTGCAAGCCTATCAGGAGTTGCCAATTGGACCGCTTTAGCCCAGCATTGGTCTTTTAATTGGGCCGGAGTTCGGTTTCCGGAGAGGGAAAAAGGGGAAGAAAAACCTAAAACAGAAGAGGAAGAAGAAGAAGAAGAACATTCGAAGAACTTCAATTTTGGTTTTGATTTGCGTATTCTTTCTGTCAAAGGATTCTGGTTATGGGGAGGTGATCTGAACAGAGGAATTTTTATTCTAATCTGA

Protein sequence

MLTYRAVFASLSGVANWTALAQHWSFNWAGVRFPEREKGEEKPKTEEEEEEEEHSKNFNFGFDLRILSVKGFWLWGGDLNRGIFILI

Homology

[Close]

BLAST of CmaCh04G003110 vs. NCBI nr
Match: KAG6600147.1 (hypothetical protein SDJN03_05380, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-16
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 33 FPEREKGEEKPK-TEEEEEEEEHSKNFNFGFDLRILSVKGFWLWGGDLNRGIFILI 88
          F   +KGEEKPK  EEEEEEEEH KNFNFGFDLRILSVKGFWLWGGDLNRGIFILI
Sbjct: 29 FKRGKKGEEKPKREEEEEEEEEHLKNFNFGFDLRILSVKGFWLWGGDLNRGIFILI 84

[Close]

BLAST of CmaCh04G003110 vs. NCBI nr
Match: KAG7030812.1 (Paired amphipathic helix protein Sin3-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-07
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1  MLTYRAVFASLSGVANWTALAQHWSFNWAG 31
          MLTYRAVFASLSGVANW+ALAQHW FNWAG
Sbjct: 1  MLTYRAVFASLSGVANWSALAQHWCFNWAG 30

The following BLAST results are available for this feature:

BLAST of CmaCh04G003110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G003110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G003110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600147.1	3.1e-16	87.50	hypothetical protein SDJN03_05380, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030812.1	7.7e-07	93.33	Paired amphipathic helix protein Sin3-like 4, partial [Cucurbita argyrosperma su...	[more]

BLAST of CmaCh04G003110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003110.1	CmaCh04G003110.1	mRNA