CmaCh04G002020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G002020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein 33-like
Location	Cma_Chr04: 958291 .. 959115 (-)
RNA-Seq Expression	CmaCh04G002020
Synteny	CmaCh04G002020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACGTCCGAAGCCACGCTGCGATCACGGTTTCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCACGTTGCAACAAGAGGTTGTTCTAAAACTTTAAAACTTAAGTCGATGATTAACGCTTTCTTAGCCTATCAAATCTTTCTCTTGCAGATCATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCACCGATATGGACAACGTTGCAGTGGTCGAGAATCCATCTATGGAGCTTCAAGTTTCGAAACAGTTGAATGAATTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTGCCGACTTTTGATGAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATTGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAATGCTATGGAGAATTCAGCCTTTGATGTATCAGTTGATGAAAACTTTGCTTATCTATGGTAGTTGATCTTGATGTATCCATTTGGTTTAGAATGACGAAATCTAAATAATTGAATGATTTATAATCCGAATATGATCGACAATGTAAAGGCTAAAACAAGTCAAATCATTC

mRNA sequence

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACGTCCGAAGCCACGCTGCGATCACGGTTTCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCACGTTGCAACAAGAGATCATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCACCGATATGGACAACGTTGCAGTGGTCGAGAATCCATCTATGGAGCTTCAAGTTTCGAAACAGTTGAATGAATTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTGCCGACTTTTGATGAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATTGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAATGCTATGGAGAATTCAGCCTTTGATGTATCAGTTGATGAAAACTTTGCTTATCTATGGTAGTTGATCTTGATGTATCCATTTGGTTTAGAATGACGAAATCTAAATAATTGAATGATTTATAATCCGAATATGATCGACAATGTAAAGGCTAAAACAAGTCAAATCATTC

Coding sequence (CDS)

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACGTCCGAAGCCACGCTGCGATCACGGTTTCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCACGTTGCAACAAGAGATCATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCACCGATATGGACAACGTTGCAGTGGTCGAGAATCCATCTATGGAGCTTCAAGTTTCGAAACAGTTGAATGAATTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTGCCGACTTTTGATGAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATTGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAATGCTATGGAGAATTCAGCCTTTGATGTATCAGTTGATGAAAACTTTGCTTATCTATGGTAG

Protein sequence

MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLFCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW

Homology

[Close]

BLAST of CmaCh04G002020 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-42
Identity = 86/146 (58.90%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
           + AAIT+SYEAL RMRDP YGCVAHIF L Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 132 ENPSMELQVSKQLNELVMNTNDYQNE 158
            N      + + +N++ M T ++ +E
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE 141

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BLAST of CmaCh04G002020 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-35
Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = 0


Query: 8   SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLP 67
           +SSSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 68  MHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDN 127
           +  R  AAIT+SYEA  R++DP YGCV+HIF LQQ++++LQ E+++L  Q A      D+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 128 VAVVENPS 136
               ENP+
Sbjct: 122 -PTSENPN 128

[Close]

BLAST of CmaCh04G002020 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.2e-33
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           S CGACKFLRRKC   CVFAP+F +++  +HFAA+HKVFGASNVSKLL HLP+  R  AA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIA 120
           +T+SYEA  R+RDP YGCVAHIF LQQ++M+LQ ++  L +  A
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAA 109

[Close]

BLAST of CmaCh04G002020 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 9   SSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SS       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 69  HVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 121
           H RS A +T+ YEA  R+RDP YGCVAHIF LQQ++++LQ E+  L + +A+
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmaCh04G002020 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.9e-32
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 132 ENPS-------MELQVSKQLNELVMNTNDYQNELLSQL 163
           ENP+         LQ S  L+   + T++ Q E  S L
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDL 158

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BLAST of CmaCh04G002020 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.7e-114
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180
           FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180

Query: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 215
           CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW
Sbjct: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 214

[Close]

BLAST of CmaCh04G002020 vs. ExPASy TrEMBL
Match: A0A6J1FLU4 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446983 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.5e-105
Identity = 197/214 (92.06%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLT  S SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLT--SYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEIMSLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180
           FT DMDNVAVVENP +ELQVSKQLN+LVMNTNDYQNELLSQLP FD+V+INDAQMISPLF
Sbjct: 121 FTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLF 180

Query: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 215
           CIGEE+GFFGCNPNNAMENSAFDV+VDE F YLW
Sbjct: 181 CIGEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 212

[Close]

BLAST of CmaCh04G002020 vs. ExPASy TrEMBL
Match: A0A6J1CDB4 (LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.9e-77
Identity = 153/193 (79.27%), Postives = 169/193 (87.56%), Query Frame = 0


Query: 11  SSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHV 70
           SSSS SSCGACKFLRRKCS+ CVFAPFF+Y+EATSHFAAVHKVFGASNVSKLLLHLP+H 
Sbjct: 7   SSSSFSSCGACKFLRRKCSDQCVFAPFFSYEEATSHFAAVHKVFGASNVSKLLLHLPVHN 66

Query: 71  RSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAV 130
           RSHAAITV+YEALERMRDPTYGC+AHIF LQQE+ SLQEEI++LGSQIANFTT  D VA 
Sbjct: 67  RSHAAITVAYEALERMRDPTYGCIAHIFALQQEVASLQEEIEILGSQIANFTTATDTVAT 126

Query: 131 VENPSMELQVSKQLNELVMNTNDYQNELLSQLP--TFDEVQINDAQMISPLFCIGEEEGF 190
            ENP +ELQVS+QL++ VMNT+DYQN L SQLP  TFD    NDAQMISPL C+GEE G+
Sbjct: 127 TENPFIELQVSQQLSDFVMNTDDYQNHLFSQLPHQTFDHRGQNDAQMISPLCCLGEENGY 186

Query: 191 FGCNPNNAMENSA 202
           FGCNP NAMEN A
Sbjct: 187 FGCNP-NAMENFA 198

[Close]

BLAST of CmaCh04G002020 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 7.4e-73
Identity = 155/222 (69.82%), Postives = 185/222 (83.33%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGL     +SS+SS+SCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGL-----NSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLP H+RSHAAITV+YEALERMRDPTYGCVAHIF LQQE+ SLQEEI++LGSQIAN
Sbjct: 61  KLLLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIAN 120

Query: 121 FTTDMDNVAVVENPSM-ELQVSKQLNEL-VMNTNDYQNELLSQLP--TFDEVQIND--AQ 180
           F T   ++A V+NP + ++QV +Q++   +MNTN YQNEL+S+LP  +FD VQ ++  AQ
Sbjct: 121 FATTGGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQ 180

Query: 181 MISPLFCIGEEEGFFG-CNPNNAMENSAFDVSVDEN-FAYLW 215
           MISPLFC+GEE+G F   N NN +E+SAFDVSV+EN   Y W
Sbjct: 181 MISPLFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPW 217

[Close]

BLAST of CmaCh04G002020 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.7e-72
Identity = 156/223 (69.96%), Postives = 183/223 (82.06%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGL     +SS++SSSCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGL-----NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLP H RSHAAITV+YEALERMRDPTYGC+AHIF LQQE++SLQEEI++LGSQIAN
Sbjct: 61  KLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIAN 120

Query: 121 FTTDMDNVAVVENPSME--LQVSKQLNELVM-NTNDYQNELLSQLP--TFDEVQ-INDAQ 180
             T   ++A VENP ++  +QVS+Q++   M NTN YQNEL S+LP  +FD +Q  N AQ
Sbjct: 121 LATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQ 180

Query: 181 MISPLFCIGEEEGFFG-CNPNNAMEN-SAFDVSVDEN-FAYLW 215
           MISPLFC+GEE+G F  CN NN +E+ SAFDVSV+EN   Y W
Sbjct: 181 MISPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPW 218

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: XP_022996495.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 421.8 bits (1083), Expect = 3.6e-114
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180
           FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180

Query: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 215
           CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW
Sbjct: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 214

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: XP_023542245.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400.2 bits (1027), Expect = 1.1e-107
Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLT  SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLT--SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEI+SLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIAN 120

Query: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180
           FT DMDNVAVVENP +ELQVSKQLN+LVMNTNDYQNELLSQLPTFDEV+ NDAQMISPLF
Sbjct: 121 FTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLF 180

Query: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 215
           CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW
Sbjct: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: KAG7030707.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394.0 bits (1011), Expect = 8.0e-106
Identity = 198/215 (92.09%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MTGLT-SSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNV 60
           MTGLT SSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTY+EATSHFAAVHKVFGASNV
Sbjct: 2   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 61

Query: 61  SKLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIA 120
           SKLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEIMSLQEEIDMLGSQIA
Sbjct: 62  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 121

Query: 121 NFTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPL 180
           NFT DMDNV VVENP +ELQVSKQLN+LVMNTNDYQNELLSQLP  D V+INDAQMISPL
Sbjct: 122 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNLDRVEINDAQMISPL 181

Query: 181 FCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 215
           FCIGEE+GFFGCNPNNAMENSAFDV++DENFAYLW
Sbjct: 182 FCIGEEDGFFGCNPNNAMENSAFDVAIDENFAYLW 216

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: XP_022941701.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 392.1 bits (1006), Expect = 3.0e-105
Identity = 197/214 (92.06%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLT  S SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLT--SYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEIMSLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180
           FT DMDNVAVVENP +ELQVSKQLN+LVMNTNDYQNELLSQLP FD+V+INDAQMISPLF
Sbjct: 121 FTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLF 180

Query: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 215
           CIGEE+GFFGCNPNNAMENSAFDV+VDE F YLW
Sbjct: 181 CIGEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 212

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: KAG6600038.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104
Identity = 197/214 (92.06%), Postives = 206/214 (96.26%), Query Frame = 0


Query: 1   MTGLT-SSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNV 60
           MTGLT SSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTY+EATSHFAAVHKVFGASNV
Sbjct: 1   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 60

Query: 61  SKLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIA 120
           SKLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEIMSLQEEIDMLGSQIA
Sbjct: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 120

Query: 121 NFTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPL 180
           NFT DMDNV VVENP +ELQVSKQLN+LVMNTNDYQNELLSQLP  D V+INDAQMISPL
Sbjct: 121 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNLDRVEINDAQMISPL 180

Query: 181 FCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYL 214
           FCIGEE+GFFGCNPNNAMENSAFDV++DENFAYL
Sbjct: 181 FCIGEEDGFFGCNPNNAMENSAFDVAIDENFAYL 214

[Close]

BLAST of CmaCh04G002020 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-43
Identity = 86/146 (58.90%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
           + AAIT+SYEAL RMRDP YGCVAHIF L Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 132 ENPSMELQVSKQLNELVMNTNDYQNE 158
            N      + + +N++ M T ++ +E
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE 141

[Close]

BLAST of CmaCh04G002020 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-36
Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = 0


Query: 8   SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLP 67
           +SSSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 68  MHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDN 127
           +  R  AAIT+SYEA  R++DP YGCV+HIF LQQ++++LQ E+++L  Q A      D+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 128 VAVVENPS 136
               ENP+
Sbjct: 122 -PTSENPN 128

[Close]

BLAST of CmaCh04G002020 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-33
Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 9   SSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SS       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 69  HVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 121
           H RS A +T+ YEA  R+RDP YGCVAHIF LQQ++++LQ E+  L + +A+
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmaCh04G002020 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-33
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 132 ENPS-------MELQVSKQLNELVMNTNDYQNELLSQL 163
           ENP+         LQ S  L+   + T++ Q E  S L
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDL 158

[Close]

BLAST of CmaCh04G002020 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-32
Identity = 62/119 (52.10%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 5   TSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLL 64
           +S + +++ + S CGACKFLRRKC++ C+FAP+F+ ++  + FAA+HKVFGASNVSKLLL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 65  HLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTT 124
           ++P+H R  A +T++YEA  R+ DP YGCV+HIF LQQ++  LQ ++  + +QIA   T
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQT 121

The following BLAST results are available for this feature:

BLAST of CmaCh04G002020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	3.8e-42	58.90	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	4.5e-35	59.38	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	7.2e-33	63.46	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
O22131	2.7e-32	58.93	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SLB6	7.9e-32	47.47	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]

BLAST of CmaCh04G002020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6X9	1.7e-114	100.00	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]
A0A6J1FLU4	1.5e-105	92.06	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446...	[more]
A0A6J1CDB4	2.9e-77	79.27	LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 ...	[more]
A0A0A0KNX8	7.4e-73	69.82	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A1S3CGM1	3.7e-72	69.96	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]

BLAST of CmaCh04G002020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022996495.1	3.6e-114	100.00	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]
XP_023542245.1	1.1e-107	94.39	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]
KAG7030707.1	8.0e-106	92.09	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022941701.1	3.0e-105	92.06	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
KAG6600038.1	1.5e-104	92.06	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of CmaCh04G002020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	2.7e-43	58.90	LOB domain-containing protein 33	[more]
AT3G58190.1	3.2e-36	59.38	lateral organ boundaries-domain 29	[more]
AT2G45420.1	1.9e-33	58.93	LOB domain-containing protein 18	[more]
AT2G42440.1	5.6e-33	47.47	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G42430.1	4.8e-32	52.10	lateral organ boundaries-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..117
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 14..165
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 14..165
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 17..114 e-value: 1.1E-32 score: 112.6
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 16..118 score: 21.855934

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G002020.1	CmaCh04G002020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus