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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAGCTCCACAGCCTCGCCAACACAGTCCCCGATATTACGAACTCTCTCTATTCTGGTTGAAAAGCTTGAACGTCGAAGTCGACCCTACTGACAAACTATCGCAAACCACCTGCAGAAGCATAGAAGATTATGTTCTAAGTAGTCATAACAACCAAAAGAAGATGGAAGCTCAGGCAGTACAGGCACAGACGACTCAAAATGAGCCTATAGTTAATACTTAGTGCAAAAGTCAAATAATAAGCTCTAAATGATTCCAAGTTCAAACTTCATTAATTCAAGGACAAGAGGTCCTATCTCCCTACATCTATCAAACTCGAGCAACAACGGAAGCATGCTTCTTGAGTAGAACTATATTCACATTTGACAATGTATCATGGTAAAAAAAAATTTACCTCCTATATGGAGATGTGAGTTGAAAATTCAATTCACCAACCTTGTGTAGAGCATTGTAATGGGTGATCTATATGGGTTTTGGTTGAAATCAAATTCAGTGTTCAAAGAGAAACATCTACAGCTTTAAGTCAAAAGGATAGCTTTTAAGGGAAAAAAAGAAGCAATTTCTTTCCATCTACGGACATATTTTTCAACTCTAAGAGCCACCATCTTGGAACACCTTTCCTACCACGGAAACCAACTACCACTGACTTCCCAATTTATCAATGA mRNA sequence ATGGCAGCTCCACAGCCTCGCCAACACAGTCCCCGATATTACGAACTCTCTCTATTCTGGTTGAAAAGCTTGAACGTCGAAGTCGACCCTACTGACAAACTATCGCAAACCACCTGCAGAAGCATAGAAGATTATGTTCTAAGTAGTCATAACAACCAAAAGAAGATGGAAGCTCAGGCAGTACAGGCACAGACGACTCAAAATGAGCCTATAAGCCACCATCTTGGAACACCTTTCCTACCACGGAAACCAACTACCACTGACTTCCCAATTTATCAATGA Coding sequence (CDS) ATGGCAGCTCCACAGCCTCGCCAACACAGTCCCCGATATTACGAACTCTCTCTATTCTGGTTGAAAAGCTTGAACGTCGAAGTCGACCCTACTGACAAACTATCGCAAACCACCTGCAGAAGCATAGAAGATTATGTTCTAAGTAGTCATAACAACCAAAAGAAGATGGAAGCTCAGGCAGTACAGGCACAGACGACTCAAAATGAGCCTATAAGCCACCATCTTGGAACACCTTTCCTACCACGGAAACCAACTACCACTGACTTCCCAATTTATCAATGA Protein sequence MAAPQPRQHSPRYYELSLFWLKSLNVEVDPTDKLSQTTCRSIEDYVLSSHNNQKKMEAQAVQAQTTQNEPISHHLGTPFLPRKPTTTDFPIYQ
Homology
BLAST of CmaCh04G002010 vs. NCBI nr
Match: KAG6600038.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21 Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0
Query: 11 PRYYELSLFWLKSLNVEVDPTDKLSQTTCRSIEDYVLSSHNNQKKMEAQAVQAQTTQNEP 70
PRYYELSLFWLKSLNVEVDPTDKLSQ TC SIEDYVLSSH+NQKKM+A AVQAQ TQNEP
Sbjct: 223 PRYYELSLFWLKSLNVEVDPTDKLSQNTCGSIEDYVLSSHDNQKKMKAGAVQAQMTQNEP 282
Query: 71 I 72
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Sbjct: 283 V 283
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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| KAG6600038.1 | 4.5e-21 | 88.52 | LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 53..93 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 53..73 |
Relationships
The following mRNA feature(s) are a part of this gene:
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