CmaCh03G014670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G014670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Cma_Chr03: 9143547 .. 9144834 (-)
RNA-Seq Expression	CmaCh03G014670
Synteny	CmaCh03G014670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGAAATGACGTTTCGAAACGATATTCAAAGTGTCATCGCTTGCTTACTTGACGTGGCTGTGTTTTCATAGGCCCTTCCTGTCCCTTACTCTCTCTCCCCTCCAACTTCCCTCCCTTGTTTATTCTTTATATATTCTTCACCTCCTCCACTTCCTAACTTATTCCTTCTTCTCAAATATGGCTGCCNTTCACCGCTCTCCACCGCCGCCGCGTCTTCCCTGCCTATCTACCCTCTTCCACAGTTATTATTGACTCGCTACTCACAGATCCATCATGTTGGCTATGGAATCCGCCTCCGCCGTCAACAGTTATAGCTCCGCCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACTATCCTCTTTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACTTTGATTAAATAATCTTCTTATTTTTCTCATTATGTTCTCGTATTTCAACTCGAAGCATGAAAATGGTAACCGTACGTGACGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGTCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCGGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCATGCCTCTCACGGATCACTCCGCTTCCTAACTTCCAATCAAGAACTTAATCAATCTATCACTTAGTTTTCTGTAAGCCCTCGTAATTATAGTTAGTATTTTGTTTAATTACCCCTTCCCAATCTGTGTTTATATATTCAGACGATTTTTTATTTTTTTTAATGGATTTTAATATTTCGTGATAACTAAATCGACAATAAAATTAAAATATATAGAAATATTGGTTCCCATCCCATTATTATAGATTGACAAATAAAATTCCACTTAGAGCAAGTTTCTCCCCAGCTATGTGTGTCACTTAAATTCTAGACATTTCTTCCTTACATCCACACGTATTAATTCAATT

mRNA sequence

AAAGGAAATGACGTTTCGAAACGATATTCAAAGTGTCATCGCTTGCTTACTTGACGTGGCTGTGTTTTCATAGGCCCTTCCTGTCCCTTACTCTCTCTCCCCTCCAACTTCCCTCCCTTGTTTATTCTTTATATATTCTTCACCTCCTCCACTTCCTAACTTATTCCTTCTTCTCAAATATGGCTGCCNTTCACCGCTCTCCACCGCCGCCGCGTCTTCCCTGCCTATCTACCCTCTTCCACAGTTATTATTGACTCGCTACTCACAGATCCATCATGTTGGCTATGGAATCCGCCTCCGCCGTCAACAGTTATAGCTCCGCCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACTATCCTCTTTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGTCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCGGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCATGCCTCTCACGGATCACTCCGCTTCCTAACTTCCAATCAAGAACTTAATCAATCTATCACTTAGTTTTCTGTAAGCCCTCGTAATTATAGTTAGTATTTTGTTTAATTACCCCTTCCCAATCTGTGTTTATATATTCAGACGATTTTTTATTTTTTTTAATGGATTTTAATATTTCGTGATAACTAAATCGACAATAAAATTAAAATATATAGAAATATTGGTTCCCATCCCATTATTATAGATTGACAAATAAAATTCCACTTAGAGCAAGTTTCTCCCCAGCTATGTGTGTCACTTAAATTCTAGACATTTCTTCCTTACATCCACACGTATTAATTCAATT

Coding sequence (CDS)

ATGTTGGCTATGGAATCCGCCTCCGCCGTCAACAGTTATAGCTCCGCCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACTATCCTCTTTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGTCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCGGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCATGCCTCTCACGGATCACTCCGCTTCCTAA

Protein sequence

MLAMESASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMAPLKKHQRHAPDEPMPLTDHSAS

Homology

[Close]

BLAST of CmaCh03G014670 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-68
Identity = 116/139 (83.45%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 38  PSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHT 97
           PS   P+LSRYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKVHT
Sbjct: 71  PSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHT 130

Query: 98  SCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLRE 157
             CPF+GHP PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG RAVRLYLRE
Sbjct: 131 PVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLRE 190

Query: 158 VRDSQAKARGIAYEKKRKK 177
           VR++QA+ARGI+YEKK++K
Sbjct: 191 VRETQARARGISYEKKKRK 209

[Close]

BLAST of CmaCh03G014670 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-68
Identity = 116/139 (83.45%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 38  PSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHT 97
           PS   P+LSRYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKVHT
Sbjct: 71  PSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHT 130

Query: 98  SCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLRE 157
             CPF+GHP PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG RAVRLYLRE
Sbjct: 131 PVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLRE 190

Query: 158 VRDSQAKARGIAYEKKRKK 177
           VR++QA+ARGI+YEKK++K
Sbjct: 191 VRETQARARGISYEKKKRK 209

[Close]

BLAST of CmaCh03G014670 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-68
Identity = 130/180 (72.22%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 14  SSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLS 73
           ++A+TTTTS+S +         +        LSRYE+QKRRDWNTFGQYL+NHRPPL+LS
Sbjct: 23  AAATTTTTSSSSS--------SSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 82

Query: 74  RCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAA 133
           RCSGAH+LEFLRYLDQFGKTKVHT  CPFFGHP PPAPC CPLRQAWGSLDALIGRLRAA
Sbjct: 83  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 142

Query: 134 FEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMAPLKKHQRHAPDEP 193
           FEENGG PETNPFG RAVRLYLREVRDSQAKARGI+YEKK++K    PL   Q      P
Sbjct: 143 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQPAISSSP 194

[Close]

BLAST of CmaCh03G014670 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.8e-68
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 43  PALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPF 102
           P  SRYESQKRRDW+TFGQYL+NHRPPL LSRCSGAH+LEFLRYLDQFGKTKVH + CPF
Sbjct: 18  PRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPF 77

Query: 103 FGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQ 162
           FGHP PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG PE NPFG RAVRLYLREVRDSQ
Sbjct: 78  FGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQ 137

Query: 163 AKARGIAYEKKRKK 177
           AKARGIAYEKKR+K
Sbjct: 138 AKARGIAYEKKRRK 151

[Close]

BLAST of CmaCh03G014670 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.8e-68
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 43  PALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPF 102
           P  SRYESQKRRDW+TFGQYL+NHRPPL LSRCSGAH+LEFLRYLDQFGKTKVH + CPF
Sbjct: 18  PRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPF 77

Query: 103 FGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQ 162
           FGHP PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG PE NPFG RAVRLYLREVRDSQ
Sbjct: 78  FGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQ 137

Query: 163 AKARGIAYEKKRKK 177
           AKARGIAYEKKR+K
Sbjct: 138 AKARGIAYEKKRRK 151

[Close]

BLAST of CmaCh03G014670 vs. ExPASy TrEMBL
Match: A0A6J1IPW9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111478381 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.8e-113
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MLAMESASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFG 60
           MLAMESASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFG
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFG 60

Query: 61  QYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAW 120
           QYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMA 180
           GSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMA
Sbjct: 121 GSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMA 180

Query: 181 PLKKHQRHAPDEPMPLTDHSAS 203
           PLKKHQRHAPDEPMPLTDHSAS
Sbjct: 181 PLKKHQRHAPDEPMPLTDHSAS 202

[Close]

BLAST of CmaCh03G014670 vs. ExPASy TrEMBL
Match: A0A6J1ED05 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111433058 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 190/206 (92.23%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH---YPLLEPAPPSPPPPALSRYESQKRRDWN 60
           MLAMES        S STTTTSTSDNHHH   YPLLEPAPPSPPPPALSRYESQKRRDWN
Sbjct: 1   MLAMESV-------STSTTTTSTSDNHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWN 60

Query: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR 120
           TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR
Sbjct: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKK 180
           QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KKRKK
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKK 180

Query: 181 SAMAPLKKHQRHAPDEPMPLTDHSAS 203
           SAMAPLKKHQRHAPDEP   TDHSAS
Sbjct: 181 SAMAPLKKHQRHAPDEP---TDHSAS 196

[Close]

BLAST of CmaCh03G014670 vs. ExPASy TrEMBL
Match: A0A5A7UB86 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009900 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.8e-87
Identity = 172/197 (87.31%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MLAMESA-SAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTF 60
           MLAME+A SAV SY+SAST    TSDNH HYPLL PAPPSPP PALSRYESQKRRDWNTF
Sbjct: 1   MLAMEAASSAVTSYTSAST----TSDNHLHYPLLLPAPPSPPTPALSRYESQKRRDWNTF 60

Query: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120
           GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHPQPPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKKSA 180
           WGSLDALIGRLRAAFEENGG PETNPFGTRAVRLYLREVR+SQAKARGIAYE KKRKKSA
Sbjct: 121 WGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSA 180

Query: 181 MAPLKKHQRHAPDEPMP 196
           MA LK +      +PMP
Sbjct: 181 MASLKINHH----QPMP 189

[Close]

BLAST of CmaCh03G014670 vs. ExPASy TrEMBL
Match: A0A1S3AZK8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103484288 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.8e-87
Identity = 172/197 (87.31%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MLAMESA-SAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTF 60
           MLAME+A SAV SY+SAST    TSDNH HYPLL PAPPSPP PALSRYESQKRRDWNTF
Sbjct: 1   MLAMEAASSAVTSYTSAST----TSDNHLHYPLLLPAPPSPPTPALSRYESQKRRDWNTF 60

Query: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120
           GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHPQPPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKKSA 180
           WGSLDALIGRLRAAFEENGG PETNPFGTRAVRLYLREVR+SQAKARGIAYE KKRKKSA
Sbjct: 121 WGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSA 180

Query: 181 MAPLKKHQRHAPDEPMP 196
           MA LK +      +PMP
Sbjct: 181 MASLKINHH----QPMP 189

[Close]

BLAST of CmaCh03G014670 vs. ExPASy TrEMBL
Match: A0A0A0KPA1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 169/198 (85.35%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 1   MLAME--SASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNT 60
           MLAME  ++SAV +Y+SAST    TSDNH HYPLL PAPPSPP PALSRYESQKRRDWNT
Sbjct: 1   MLAMEVTASSAVTTYTSAST----TSDNHPHYPLLLPAPPSPPTPALSRYESQKRRDWNT 60

Query: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ 120
           FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHPQPPAPCPCPLRQ
Sbjct: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKKS 180
           AWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVR+SQAKARGIAYE KKRKKS
Sbjct: 121 AWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS 180

Query: 181 AMAPLKKHQRHAPDEPMP 196
            MAPLK +      +PMP
Sbjct: 181 GMAPLKINHH----QPMP 190

[Close]

BLAST of CmaCh03G014670 vs. NCBI nr
Match: XP_022978370.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 418.3 bits (1074), Expect = 3.7e-113
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MLAMESASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFG 60
           MLAMESASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFG
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFG 60

Query: 61  QYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAW 120
           QYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMA 180
           GSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMA
Sbjct: 121 GSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMA 180

Query: 181 PLKKHQRHAPDEPMPLTDHSAS 203
           PLKKHQRHAPDEPMPLTDHSAS
Sbjct: 181 PLKKHQRHAPDEPMPLTDHSAS 202

[Close]

BLAST of CmaCh03G014670 vs. NCBI nr
Match: XP_023544575.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 198/205 (96.59%), Postives = 199/205 (97.07%), Query Frame = 0


Query: 1   MLAMESASAVNSYSSASTTTTSTSDNHH--HYPLLEPAPPSPPPPALSRYESQKRRDWNT 60
           MLAMESASAVNSY+SASTTTTSTSDNHH  HYPLLEPAPPSPPPPALSRYESQKRRDWNT
Sbjct: 1   MLAMESASAVNSYTSASTTTTSTSDNHHHLHYPLLEPAPPSPPPPALSRYESQKRRDWNT 60

Query: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ 120
           FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ
Sbjct: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKKS 180
           AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KKRKKS
Sbjct: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKS 180

Query: 181 AMAPLKKHQRHAPDEPMPLTDHSAS 203
           AMAPLKKHQRHAPDEP   TDHSAS
Sbjct: 181 AMAPLKKHQRHAPDEP---TDHSAS 202

[Close]

BLAST of CmaCh03G014670 vs. NCBI nr
Match: XP_022925731.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 375.6 bits (963), Expect = 2.8e-100
Identity = 190/206 (92.23%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH---YPLLEPAPPSPPPPALSRYESQKRRDWN 60
           MLAMES        S STTTTSTSDNHHH   YPLLEPAPPSPPPPALSRYESQKRRDWN
Sbjct: 1   MLAMESV-------STSTTTTSTSDNHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWN 60

Query: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR 120
           TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR
Sbjct: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKK 180
           QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KKRKK
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKK 180

Query: 181 SAMAPLKKHQRHAPDEPMPLTDHSAS 203
           SAMAPLKKHQRHAPDEP   TDHSAS
Sbjct: 181 SAMAPLKKHQRHAPDEP---TDHSAS 196

[Close]

BLAST of CmaCh03G014670 vs. NCBI nr
Match: KAG6581495.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034783.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 6.2e-100
Identity = 190/209 (90.91%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH------YPLLEPAPPSPPPPALSRYESQKRR 60
           MLAMES        S STTTTSTSDNHHH      YPLLEPAPPSPPPPALSRYESQKRR
Sbjct: 1   MLAMESV-------STSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRR 60

Query: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120
           DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC
Sbjct: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120

Query: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KK 180
           PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KK
Sbjct: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKK 180

Query: 181 RKKSAMAPLKKHQRHAPDEPMPLTDHSAS 203
           RKKSAMAPLKKHQRHAPDEP   TDHSAS
Sbjct: 181 RKKSAMAPLKKHQRHAPDEP---TDHSAS 199

[Close]

BLAST of CmaCh03G014670 vs. NCBI nr
Match: XP_038881876.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 360.9 bits (925), Expect = 7.1e-96
Identity = 183/205 (89.27%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH--YPLLEPAPPSPPPPALSRYESQKRRDWNT 60
           MLAM++ASAVNSY+SAS TTTS SDNHHH  YPLL PAPPSPPPPALSRYESQKRRDWNT
Sbjct: 1   MLAMQAASAVNSYTSAS-TTTSNSDNHHHRQYPLLVPAPPSPPPPALSRYESQKRRDWNT 60

Query: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ 120
           FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ
Sbjct: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKKS 180
           AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYE KKRKKS
Sbjct: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS 180

Query: 181 AMAPLKKHQRHAPDEPMPLTDHSAS 203
            M  +KK+Q      PMPL DHSAS
Sbjct: 181 GMPSVKKNQ------PMPLLDHSAS 198

[Close]

BLAST of CmaCh03G014670 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-69
Identity = 130/180 (72.22%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 14  SSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLS 73
           ++A+TTTTS+S +         +        LSRYE+QKRRDWNTFGQYL+NHRPPL+LS
Sbjct: 23  AAATTTTTSSSSS--------SSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 82

Query: 74  RCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAA 133
           RCSGAH+LEFLRYLDQFGKTKVHT  CPFFGHP PPAPC CPLRQAWGSLDALIGRLRAA
Sbjct: 83  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 142

Query: 134 FEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKKSAMAPLKKHQRHAPDEP 193
           FEENGG PETNPFG RAVRLYLREVRDSQAKARGI+YEKK++K    PL   Q      P
Sbjct: 143 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQPAISSSP 194

[Close]

BLAST of CmaCh03G014670 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-67
Identity = 126/179 (70.39%), Postives = 144/179 (80.45%), Query Frame = 0


Query: 4   MESASA------VNSYSSASTTTTSTSDNHHHYPLLEPAPPSPPPPALSRYESQKRRDWN 63
           ME +SA      +N  S+ S++ T  +      PL   + PS      SRYE+QKRRDWN
Sbjct: 8   MEGSSAYGGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANS---SRYENQKRRDWN 67

Query: 64  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR 123
           TFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT+ C F+GHP PPAPCPCPLR
Sbjct: 68  TFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLR 127

Query: 124 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKRKK 177
           QAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRD Q+KARG++YEKK++K
Sbjct: 128 QAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRK 183

[Close]

BLAST of CmaCh03G014670 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-64
Identity = 110/142 (77.46%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 35  PAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTK 94
           P+  S PP   SRYESQKRRDWNTF QYLKNH+PPL LSRCSGAH++EFL+YLDQFGKTK
Sbjct: 19  PSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTK 78

Query: 95  VHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLY 154
           VH + CP+FGH QPP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF  RAVR+Y
Sbjct: 79  VHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIY 138

Query: 155 LREVRDSQAKARGIAYEKKRKK 177
           LREVR+SQAKARGI YEKK++K
Sbjct: 139 LREVRESQAKARGIPYEKKKRK 160

[Close]

BLAST of CmaCh03G014670 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-64
Identity = 111/135 (82.22%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 42  PPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCP 101
           PP+ SRYE+QKRRDWNTF QYL+NHRPPL+L  CSGAH+LEFLRYLDQFGKTKVH   C 
Sbjct: 20  PPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCA 79

Query: 102 FFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDS 161
           FFG P PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG+RAVRL+LREVRD 
Sbjct: 80  FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDF 139

Query: 162 QAKARGIAYEKKRKK 177
           QAKARG++YEKKRK+
Sbjct: 140 QAKARGVSYEKKRKR 154

[Close]

BLAST of CmaCh03G014670 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.0 bits (606), Expect = 6.4e-63
Identity = 106/135 (78.52%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 42  PPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCP 101
           PP+ SRYE+QKRRDWNTF QYL+NH PPL+L+ CSGAH+L+FLRYLDQFGKTKVH   C 
Sbjct: 28  PPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCA 87

Query: 102 FFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDS 161
           FFG P PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PET+PFG+R+VR++LREVRD 
Sbjct: 88  FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDF 147

Query: 162 QAKARGIAYEKKRKK 177
           QAK+RG++YEKKRK+
Sbjct: 148 QAKSRGVSYEKKRKR 162

The following BLAST results are available for this feature:

BLAST of CmaCh03G014670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XAV5	2.9e-68	83.45	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	2.9e-68	83.45	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q9LW68	2.9e-68	72.22	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2YG32	3.8e-68	88.06	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]
Q652I1	3.8e-68	88.06	Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1	[more]

BLAST of CmaCh03G014670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPW9	1.8e-113	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ED05	1.3e-100	92.23	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7UB86	3.8e-87	87.31	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3AZK8	3.8e-87	87.31	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KPA1	1.4e-86	85.35	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 S...	[more]

BLAST of CmaCh03G014670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978370.1	3.7e-113	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_023544575.1	2.0e-106	96.59	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022925731.1	2.8e-100	92.23	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]
KAG6581495.1	6.2e-100	90.91	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_038881876.1	7.1e-96	89.27	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]

BLAST of CmaCh03G014670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	2.1e-69	72.22	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.5e-67	70.39	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.2e-64	77.46	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.5e-64	82.22	Protein of unknown function (DUF640)	[more]
AT3G04510.1	6.4e-63	78.52	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 40..160 e-value: 4.0E-66 score: 220.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 47..174 score: 83.541405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..202
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 4..186
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 4..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G014670.1	CmaCh03G014670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus