CmaCh03G014260 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G014260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 8929351 .. 8932360 (-)
RNA-Seq Expression	CmaCh03G014260
Synteny	CmaCh03G014260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCTTAATACGGTTGTTGGCTACAAAAGCACTGTCAGCATATGGCTCTTGCCTTGTTGGTAACTGTTCGGTGGAAAATCAAAGTATCTCAAGACCATTTACTGTTCTTGTGCTTATTCAGGAAGAAGTTATTTAGAATACACCTCCTATGCTTCAATCTTTGCTTACGTTTTATTCTTTTCGCCTAAGGATAATATGAGGCAATTATTGAGGGGACAAGGAAAAGCTAAGATCATTTGAGTTTATGTGATTGAATCAATTTCTTGGATTCTTTGCTTGGAGAGAAACCGTCAACATTTACATTGACGGGGAAGAACTTGGAAAGTTATGTCCCTAATCAAATGCATATGATTTGATGATTTATTATGCTCAATATTACACTATTATTAGTAGTAATTAATTTCCATGGGAGTTCATTCTGTAAGCTCCTGATGTGGAAGTGTAGTTTTTTTTCACTTAGCCTTTGAATACATCAATGAAAAGGAGGAAAAGAAAAAAGAGATTGGCTATTGTGGAGAATATCACAAATTGTACCAATGATAATTTGTGCTGATTTGTGTTCTGGAATTTAGCTTTGCATTAGTATACCTTTTGATTGGTCTTCATAGAAGTTGATCAGAGTTTGATCTTAGACTACCATCACGTCATCATCATTTTTTTTTTAAGAGAAAAGATTGTTATTTATGTATTTTATTATGCTTAAGAGTCTACTCTTGAAAGGCATATGATACTGAATTAGGCTCGTTTTTCTTTATATCAGGTGTAACAGAAATAACGCCCTACTCTCCTGGTGATTCCACTCTCCAGCAAACAAGACAGACTTCTTACTTCAAAAAGCATAGGGAGCAGCATGAGTCATCAAAGATAATGGTATGGCTGTCATTATTTCTTATTCTCTACAATGTTTCTGAAACACCCTTTGCAATCATATCAGCCAAATCTTTACAATCCTGAAACATCTTTAGAGTGTACTGTACTTTTTTTCTTTCCTTATGGCAGATTCTCATTCTCATGAAATGAACAATATCCTTTCACTTCCTTTCATTCGGATGTCTGAATATAAAATTGATATGAATTCAGTTGCCTTTGAACTGAGCTGAGATCAACAGAATTCTTTTTATGGTTTCCTTGAATGCATTATCAATATGGCAGTAGATAAGATTGGAAGTCTAGAGTGATTTCTTTGGCAGAGGTTCCAAAAGTCCACGTTCCTCTTGTGGAAGATAAATTGCAAGTCTATGAATGATAGTCTATAATTACTAGGTTTGGATTGTCTATTGGTTGAGGTACAACTGAAAATGACTTTATTGACTCTGTTTTGTTATTTCTGCTACATATTCTATTCCCTTTTGAAAAAGTTGAGCCTTGTGACAAATATTTGCCAAATTGGTTGGCCAGGTGTCTCTATTTTTCTTGTATTATGAGGAATTGAAGTGCTGCAACATCTGGACTGGAAGGGCAAGTTCTGGCATTCAAGGTATCAAAATTATAGTCAAATCCAATGTCAAAAAAAAAAAAAGAAAAAAGATAAATGAATCAAGTGAAGTCCAACTGTCAAAAATAAAAGTCTTCTGTGTTTTTCCCCTTCTTTTTCTCCGATCAAAGTCTAATCAAATCATTCTCTTCAGTCCTAGTAATTCCTAGCTAATCAGGAGCTTGAATCTACAGTTTTTTTTATCCCTCTCTCTCTAAACTTAAGCATTCCCTTTTTTCTCCCCTCTTTTCTTTTTCCTTTCTAGTCTTTATCATACAGAAAGCAAGATATGTTTCAATGTTATACGCTTGATTTGGCTTAAAACACCTTGTATTTCTCCTACATGCTCTTGGCTGTAGACTGAAAACTTGGCCATTTTTACACCCCAAAATCTGATTATGGAAGGAAAATGAGCACCAAAAAAAAAAAAAAAAAAAAAAAAGGAGAGATTTTGTTAAAAGCAGTTGATTCTATTTGCTCCCTCCAGAAGAATGAGGATCATCCAAATAGCCCATAAAGATTTGTTATCTTTTGCTACATGATTACCATTTGGATTGGTAAGTATTTTATTAACAGATGTTCCCTATTCCCACTGCATTTTCTTGACCCATCACAGAGATCGAGACCCTGTTTAGTTGCTAGTTGAGCTAAAGTAGTACTTTGTTTATTGCATTATCTCTATCTTTTTGTTAACCATGTGCTCCTCTTTTCTTGTTTGCAACGCAGCCACACACATACATATATCATATGTCCCAACGTTAACTTTTTCAACAGCAAAACCTTTTCTCAAGCTGTGAACATGAGAGCCACAAAATCCAAATGTCAGGCCTTTTCTAAACTCCATATGGTACTTGTAATAATACCTAGATGCTTCTTTTAGAAATAATGTTTAAAAACTATCCTCCATTTTTAAATATAGAGAATCTCTTTTGACAGTGACAACTTAGCCTTGCTATTTCTCAAATTTTCTCTAATTTTTGCAGTCCTTGCAACCGAGAAAGGTTAATGTAAGGATAACGTGTAACTTTATGAGGTGTTCTGTTAGTATAGGAGCATTTGTAACGGATGAAAAATACGAAAAATATACCGACATAGCTAACATGACGTTTTAAAGAAAGAAAAAAGAACGTGTTAAAGTGGGTTATGAACCATAGGAATGAACAATTATGCTAGAGAATTCATGAAATAGTCTTGAAAGATATTTTTGTGATTTAAAATCTTCTTGATATTATTTATTTTGTAGGTATCAGTAATGCATAGATTGAAAGAGGAATGATTATATGATTTGTTGTCAAGTTTGTAAAGAAAGGGAGAGTTTTGAGGCAAATGAATGTATAAAAGCACGCAATGTCTGCTATGAAGGTATCATCATGCACTCTTGGTCTCGCCTCCCACTTTTAACATCTTCTCACTTCCACCTAATTCTCTATTCCAACCAATCCCCTTCCTTAATAGCTGCAATCATTTTGATCACTATCGACCCATTTCTACTGATGTGATCCATATTTTACTGAAATGAACGAACTCTCGG

mRNA sequence

ATGGAGGGCTTAATACGGTTGTTGGCTACAAAAGCACTGTCAGCATATGGCTCTTGCCTTGTTGGTGTAACAGAAATAACGCCCTACTCTCCTGGTGATTCCACTCTCCAGCAAACAAGACAGACTTCTTACTTCAAAAAGCATAGGGAGCAGCATGAGTCATCAAAGATAATGGTGTCTCTATTTTTCTTGTATTATGAGGAATTGAAGTGCTGCAACATCTGGACTGGAAGGGCAAGTTCTGGCATTCAAGCCACACACATACATATATCATATGTCCCAACGTTAACTTTTTCAACAGCAAAACCTTTTCTCAAGCTGTGAACATGAGAGCCACAAAATCCAAATGTCAGGCCTTTTCTAAACTCCATATGGTATCAGTAATGCATAGATTGAAAGAGGAATGATTATATGATTTGTTGTCAAGTTTGTAAAGAAAGGGAGAGTTTTGAGGCAAATGAATGTATAAAAGCACGCAATGTCTGCTATGAAGGTATCATCATGCACTCTTGGTCTCGCCTCCCACTTTTAACATCTTCTCACTTCCACCTAATTCTCTATTCCAACCAATCCCCTTCCTTAATAGCTGCAATCATTTTGATCACTATCGACCCATTTCTACTGATGTGATCCATATTTTACTGAAATGAACGAACTCTCGG

Coding sequence (CDS)

ATGGAGGGCTTAATACGGTTGTTGGCTACAAAAGCACTGTCAGCATATGGCTCTTGCCTTGTTGGTGTAACAGAAATAACGCCCTACTCTCCTGGTGATTCCACTCTCCAGCAAACAAGACAGACTTCTTACTTCAAAAAGCATAGGGAGCAGCATGAGTCATCAAAGATAATGGTGTCTCTATTTTTCTTGTATTATGAGGAATTGAAGTGCTGCAACATCTGGACTGGAAGGGCAAGTTCTGGCATTCAAGCCACACACATACATATATCATATGTCCCAACGTTAACTTTTTCAACAGCAAAACCTTTTCTCAAGCTGTGA

Protein sequence

MEGLIRLLATKALSAYGSCLVGVTEITPYSPGDSTLQQTRQTSYFKKHREQHESSKIMVSLFFLYYEELKCCNIWTGRASSGIQATHIHISYVPTLTFSTAKPFLKL

Homology

[Close]

BLAST of CmaCh03G014260 vs. NCBI nr
Match: KAG7034744.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 22  GVTEITPYSPGDSTLQQTRQTSYFKKHREQHESSKIM 59
           GVTEITPYSPGDSTLQQTRQTSYFKKHREQHESSKIM
Sbjct: 822 GVTEITPYSPGDSTLQQTRQTSYFKKHREQHESSKIM 858

The following BLAST results are available for this feature:

BLAST of CmaCh03G014260 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G014260 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G014260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034744.1	6.3e-11	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of CmaCh03G014260 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G014260.1	CmaCh03G014260.1	mRNA