CmaCh03G013850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G013850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 8766031 .. 8766282 (+)
RNA-Seq Expression	CmaCh03G013850
Synteny	CmaCh03G013850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGCAATTGATAGGAAGAAGACGAAGACGACGAAGAAGACGAAGAAGAGGAGAGCATTCAGCATCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAAGGATTTCAAGTGGAAGAGATTGAATCTCCACATCGGTTTCTTAGATGCTATAATCTTTCGAATCGCTTCTCTGTTTGAGGCCATTGCGTTGGTAGGCATCGCCGGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTCTGA

mRNA sequence

ATGGATGATGCAATTGATAGGAAGAAGACGAAGACGACGAAGAAGACGAAGAAGAGGAGAGCATTCAGCATCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAAGGATTTCAAGTGGAAGAGATTGAATCTCCACATCGGTTTCTTAGATGCTATAATCTTTCGAATCGCTTCTCTGTTTGAGGCCATTGCGTTGGTAGGCATCGCCGGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTCTGA

Coding sequence (CDS)

ATGGATGATGCAATTGATAGGAAGAAGACGAAGACGACGAAGAAGACGAAGAAGAGGAGAGCATTCAGCATCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAAGGATTTCAAGTGGAAGAGATTGAATCTCCACATCGGTTTCTTAGATGCTATAATCTTTCGAATCGCTTCTCTGTTTGAGGCCATTGCGTTGGTAGGCATCGCCGGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTCTGA

Protein sequence

MDDAIDRKKTKTTKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGGCRF

Homology

[Close]

BLAST of CmaCh03G013850 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.8e-28
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MDDAIDRKKTKTTKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS 60
          MDDAIDRKKTKT KK    R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI S
Sbjct: 1  MDDAIDRKKTKTMKK----RVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVS 60

Query: 61 LFEAIALVGIAGFFFLCCGGCRF 84
          LFE +ALVGIA FFFLCCGGCRF
Sbjct: 61 LFETVALVGIASFFFLCCGGCRF 79

[Close]

BLAST of CmaCh03G013850 vs. ExPASy TrEMBL
Match: A0A6P9EL64 (uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 17 KKRRAFSIQRLR-DSWKWKFL--KDFKWKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 76
          KK R  S ++LR  +W+WKF     F+WKRLNL + F+D ++FRIASLFEAI LV    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 77 FFLCCGGCRF 84
          F+LCC GC F
Sbjct: 64 FYLCC-GCHF 72

[Close]

BLAST of CmaCh03G013850 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.5e-09
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 9  KTKTTKKTKKRRAFSIQRLRDSWKWKFL-KDFKWKRLNLHIGFLDAIIFRIASLFEAIAL 68
          KT ++  + KR     + +++SW+WKFL   FKWKRLN+ + F D ++FRIAS+ EAI L
Sbjct: 3  KTSSSSSSSKRWVLFKRLIKESWRWKFLGSAFKWKRLNIQLSFFDDVLFRIASVLEAIYL 62

Query: 69 VGIAGFFFLCCGGCRF 84
          V    FF+LCC GC F
Sbjct: 63 VATLCFFYLCC-GCHF 77

[Close]

BLAST of CmaCh03G013850 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.5e-09
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 17 KKRRAFSIQRLR--DSWKWKFL-KDFKWKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 76
          KK R    +RLR   +W+WKFL   FKWKRLNL + F+D ++FRI S+FEAI LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 77 FFLCCGGCRF 84
          F+LCC GC F
Sbjct: 64 FYLCC-GCHF 72

[Close]

BLAST of CmaCh03G013850 vs. ExPASy TrEMBL
Match: A0A061GEB5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 7   RKKTKTTKKTKK-----RRAFSIQRL--RDSWKWKFL-KDFKWKRLNLHIGFLDAIIFRI 66
           RKK K  KK K+     +R    +RL  ++SW+WKFL   FKWKRLN+ + F+D ++FRI
Sbjct: 106 RKKRKNKKKKKEVMGGTKRWVLFKRLIKKESWRWKFLGSAFKWKRLNIQLSFVDDVLFRI 165

Query: 67  ASLFEAIALVGIAGFFFLCCGGCRF 84
           AS+ EAI LV    FF+LCC GC F
Sbjct: 166 ASVLEAIFLVATLCFFYLCC-GCHF 189

[Close]

BLAST of CmaCh03G013850 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 3.0e-32
Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MDDAIDRKKTKTTKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS 60
          MDDAIDR      KKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS
Sbjct: 1  MDDAIDR------KKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS 60

Query: 61 LFEAIALVGIAGFFFLCCGGCRF 84
          LFEAIAL+GIAGFFFLCCGGCRF
Sbjct: 61 LFEAIALIGIAGFFFLCCGGCRF 77

[Close]

BLAST of CmaCh03G013850 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 5.8e-28
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MDDAIDRKKTKTTKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS 60
          MDDAIDRKKTKT KK    R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI S
Sbjct: 1  MDDAIDRKKTKTMKK----RVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVS 60

Query: 61 LFEAIALVGIAGFFFLCCGGCRF 84
          LFE +ALVGIA FFFLCCGGCRF
Sbjct: 61 LFETVALVGIASFFFLCCGGCRF 79

[Close]

BLAST of CmaCh03G013850 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 9.2e-26
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MDDAIDRKKTKTTKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS 60
          MDDAIDR      KKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS
Sbjct: 1  MDDAIDR------KKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIAS 60

Query: 61 LFEAIALVGIAGFF 75
          LFEAIAL+GIAGFF
Sbjct: 61 LFEAIALIGIAGFF 68

[Close]

BLAST of CmaCh03G013850 vs. NCBI nr
Match: XP_023929751.1 (uncharacterized protein LOC112041078 [Quercus suber])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 17 KKRRAFSIQRLR--DSWKWKFL-KDFKWKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 76
          KK R    +RLR   +W+WKFL   FKWKRLNLH+ F+D ++FRI S+FEAI LV    F
Sbjct: 4  KKNRWIFFRRLRMQTAWRWKFLGSAFKWKRLNLHLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 77 FFLCCGGCRF 84
          F+LCC GC F
Sbjct: 64 FYLCC-GCHF 72

[Close]

BLAST of CmaCh03G013850 vs. NCBI nr
Match: XP_035544743.1 (uncharacterized protein LOC108990492 [Juglans regia])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 17 KKRRAFSIQRLR-DSWKWKFL--KDFKWKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 76
          KK R  S ++LR  +W+WKF     F+WKRLNL + F+D ++FRIASLFEAI LV    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 77 FFLCCGGCRF 84
          F+LCC GC F
Sbjct: 64 FYLCC-GCHF 72

[Close]

BLAST of CmaCh03G013850 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 40 KWKRLNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGGCRF 84
          KWKRLNL + FL+ + +RI S+ EA+ LV    FFFLCC GC+F
Sbjct: 29 KWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAFFFLCC-GCKF 71

The following BLAST results are available for this feature:

BLAST of CmaCh03G013850 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G013850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLX9	2.8e-28	81.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1	[more]
A0A6P9EL64	5.0e-09	55.71	uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 P...	[more]
A0A1R3FVP9	6.5e-09	48.68	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1	[more]
A0A7N2LSF8	6.5e-09	55.71	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A061GEB5	1.1e-08	50.59	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1	[more]

BLAST of CmaCh03G013850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034699.1	3.0e-32	91.57	hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN49382.1	5.8e-28	81.93	hypothetical protein Csa_004198 [Cucumis sativus]	[more]
KAG6581417.1	9.2e-26	90.54	hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023929751.1	1.6e-09	57.14	uncharacterized protein LOC112041078 [Quercus suber]	[more]
XP_035544743.1	1.0e-08	55.71	uncharacterized protein LOC108990492 [Juglans regia]	[more]

BLAST of CmaCh03G013850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46295.1	6.0e-07	56.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726:SF3	TRANSMEMBRANE PROTEIN	coord: 17..83
None	No IPR available	PANTHER	PTHR33726	TRANSMEMBRANE PROTEIN	coord: 17..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G013850.1	CmaCh03G013850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane