CmaCh03G011370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G011370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 7691339 .. 7692305 (+)
RNA-Seq Expression	CmaCh03G011370
Synteny	CmaCh03G011370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACTCTGTTTTCTCCTCCGTCTCTTCCCTTTTTTCCATCAATCCTTCACCCAAAATTTTCCCGGAAACATCTCGAACCCATCGCCGTCGCTGTCGCCAAGAGCTTGTGGTTACTCCAATGGAAGATGGGTTTGGGATGAGACTTATCCATTCCACTCTTACGCCGAGAATTGCCCCTTCGCTGATACTGGATTCCGGTGCGCCCAAAATGGTCGGAATGATGACGGTTACCGAAGCGGTAGCGGCAGACGGACGGCTCCGATATCCCGAGGTATGAGTATGGCTATGAACTTCTTGGTCTTGAATTCTTTTAGAATCCTTTTCAACTCATCTGGGAGTATGAATTTTCAATTCGCCATTGTTTATGTGCGGAAGTACAGCAAATGCTATTAATCCTGGTTATATAATGGAAAAACCTGCTAGGGAAGACAACCTCTCAACCAAAAAGTGTAATCGTATGGGATCTTAACAAAGACGTGGATGAAAATATGGATTTTGTGTCCCAAAACAATCTCAAGAGAGATTCAAATCGTTTAGGAAAATTGATAGCACAATACTTCAGAACACTAAGGTTCGGTTGTTCTCTCACAATCCAAGCATAGTTTAGTAAACCAACTGGATTAATTATTTTCATACAATTGTGAATCTAGATTGAGTTTCGACTCTAGATGTAAACATTTGATCAGATTACTGCGACATGTTAGCTCAAGGATTAATACACCTTCTTTCCTATCGATAAATGGGAAAAGAGAAAGTAACATCCATTTTTGTTTCAGAGGTTACTATTTCCAAGAAGAGGAGAGATTGAATATGGATGTAATGGAAGCATTTCGTGGGTCGCTACAGACATCGAAGCGTTGGGTGGAGGAACATTTGGATCCAAACTGAACTTGAGTTTTCTTTCGAAGGCATTCTCCTGTTCATTAAGGGTAAATTATAGTCATGTTCATGATGAGCCTAGATGA

mRNA sequence

CTTCACTCTGTTTTCTCCTCCGTCTCTTCCCTTTTTTCCATCAATCCTTCACCCAAAATTTTCCCGGAAACATCTCGAACCCATCGCCGTCGCTGTCGCCAAGAGCTTGTGGTTACTCCAATGGAAGATGGGTTTGGGATGAGACTTATCCATTCCACTCTTACGCCGAGAATTGCCCCTTCGCTGATACTGGATTCCGGTGCGCCCAAAATGGTCGGAATGATGACGGTTACCGAAGCGGTAGCGGCAGACGGACGGCTCCGATATCCCGAGAGGTTACTATTTCCAAGAAGAGGAGAGATTGAATATGGATGTAATGGAAGCATTTCGTGGGTCGCTACAGACATCGAAGCGTTGGGTGGAGGAACATTTGGATCCAAACTGAACTTGAGTTTTCTTTCGAAGGCATTCTCCTGTTCATTAAGGGTAAATTATAGTCATGTTCATGATGAGCCTAGATGA

Coding sequence (CDS)

ATGGAAGATGGGTTTGGGATGAGACTTATCCATTCCACTCTTACGCCGAGAATTGCCCCTTCGCTGATACTGGATTCCGGTGCGCCCAAAATGGTCGGAATGATGACGGTTACCGAAGCGGTAGCGGCAGACGGACGGCTCCGATATCCCGAGAGGTTACTATTTCCAAGAAGAGGAGAGATTGAATATGGATGTAATGGAAGCATTTCGTGGGTCGCTACAGACATCGAAGCGTTGGGTGGAGGAACATTTGGATCCAAACTGAACTTGAGTTTTCTTTCGAAGGCATTCTCCTGTTCATTAAGGGTAAATTATAGTCATGTTCATGATGAGCCTAGATGA

Protein sequence

MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAADGRLRYPERLLFPRRGEIEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRVNYSHVHDEPR

Homology

[Close]

BLAST of CmaCh03G011370 vs. ExPASy TrEMBL
Match: A0A6J1IVD0 (uncharacterized protein LOC111478892 OS=Cucurbita maxima OX=3661 GN=LOC111478892 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAADGRLRYPERLLFPRRGE 60
           MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAADGRLRYPERLLFPRRGE
Sbjct: 1   MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAADGRLRYPERLLFPRRGE 60

Query: 61  IEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRVNYSHVHDEPR 114
           IEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRVNYSHVHDEPR
Sbjct: 61  IEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRVNYSHVHDEPR 113

[Close]

BLAST of CmaCh03G011370 vs. NCBI nr
Match: XP_022979173.1 (uncharacterized protein LOC111478892 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 3.3e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAADGRLRYPERLLFPRRGE 60
           MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAADGRLRYPERLLFPRRGE
Sbjct: 1   MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAADGRLRYPERLLFPRRGE 60

Query: 61  IEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRVNYSHVHDEPR 114
           IEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRVNYSHVHDEPR
Sbjct: 61  IEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRVNYSHVHDEPR 113

[Close]

BLAST of CmaCh03G011370 vs. NCBI nr
Match: KAG7034482.1 (Protein trichome birefringence-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 82/129 (63.57%), Postives = 91/129 (70.54%), Query Frame = 0


Query: 1   MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVTEAVAA----------------- 60
           ME+GFGMRL+HSTLTPRIAPSLILDSGA KM GMMTVT + +                  
Sbjct: 1   MENGFGMRLMHSTLTPRIAPSLILDSGASKMAGMMTVTGSGSGRRTAAISRERFKSFRKI 60

Query: 61  DGRLRYPERLLFPRRGEIEYGCNGSISWVATDIEALGGGTFGSKLNLSFLSKAFSCSLRV 113
           D  L+  +RLLF RRGE EYGCNGSI WVATDIEA+GGGTFGSKLN SFLS+ FSCS R 
Sbjct: 61  DSTLQNTKRLLFLRRGETEYGCNGSILWVATDIEAMGGGTFGSKLNSSFLSRVFSCSSRK 120

[Close]

BLAST of CmaCh03G011370 vs. NCBI nr
Match: KAG6604332.1 (hypothetical protein SDJN03_04941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1  MEDGFGMRLIHSTLTPRIAPSLILDSGAPKMVGMMTVT 39
          ME+GFGMRL+HSTLTPRIAPSLILDSGA KM GMMTVT
Sbjct: 1  MENGFGMRLMHSTLTPRIAPSLILDSGASKMAGMMTVT 38

The following BLAST results are available for this feature:

BLAST of CmaCh03G011370 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G011370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVD0	1.6e-58	100.00	uncharacterized protein LOC111478892 OS=Cucurbita maxima OX=3661 GN=LOC111478892...	[more]

BLAST of CmaCh03G011370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979173.1	3.3e-58	100.00	uncharacterized protein LOC111478892 [Cucurbita maxima]	[more]
KAG7034482.1	1.1e-34	63.57	Protein trichome birefringence-like 8, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6604332.1	3.7e-09	89.47	hypothetical protein SDJN03_04941, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh03G011370 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G011370.1	CmaCh03G011370.1	mRNA