Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGTGACCAGATGTTGATGTCGTTGTGGCCTTGATAGTTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA
mRNA sequence
ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA
Coding sequence (CDS)
ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA
Protein sequence
MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDERLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGVLDDEFGLCRLKNGPN
Homology
BLAST of CmaCh03G011220 vs. ExPASy TrEMBL
Match:
A0A5D3BXB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21333G00010 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41
Identity = 96/135 (71.11%), Postives = 108/135 (80.00%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDE----------- 60
MV AGDEG DLESDATV+F+GQ D +GL+LI+ GAVVG DRNGVTD+E
Sbjct: 1 MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
Query: 61 --RLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
RLN GTESDLLV V+GVD+EAVV+DSDLVV V G DGDLDTGGD++S GD+EE DGGV
Sbjct: 61 VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120
Query: 121 LDDEFGLCRLKNGPN 123
LDDEFGLCRLKNGPN
Sbjct: 121 LDDEFGLCRLKNGPN 135
BLAST of CmaCh03G011220 vs. ExPASy TrEMBL
Match:
A0A0A0KKM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 6.1e-40
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDER---------- 60
MVAAGDEG D ESDA V+F+GQ DG +GL+LI+ GAVVGRD N VTD+E
Sbjct: 1 MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60
Query: 61 ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SGG++EE DGGV
Sbjct: 61 VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120
Query: 121 LDDEFGLCRLKNGPN 123
LDDEFGLC LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135
BLAST of CmaCh03G011220 vs. ExPASy TrEMBL
Match:
A0A5A7QLV4 (Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 75/135 (55.56%), Postives = 86/135 (63.70%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDERLND------- 60
+V+AGDEGAD DA VDFDG+ DGA GLVL E AVVG D + V DE D
Sbjct: 70 VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129
Query: 61 ------GTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
G SDLLV V D EAVVVD D VRV GDGDL+ GGD + GGDVE+EDGGV
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189
Query: 121 LDDEFGLCRLKNGPN 123
L+DE G L++GP+
Sbjct: 190 LEDESGFSGLEDGPH 204
BLAST of CmaCh03G011220 vs. ExPASy TrEMBL
Match:
A0A5A7QCZ2 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_18573 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 70/135 (51.85%), Postives = 80/135 (59.26%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDER---------L 60
MVAAGDEG D D D DG+ DGA GLVL E AVVG D + V +ER L
Sbjct: 70 MVAAGDEGTDPPLDPAGDLDGEADGAGGLVLAEGEAVVGCDGDVVAVEERGPDVEVMVAL 129
Query: 61 NDGTE----SDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
DG + DLL V GV EAVVVD+D V V GG GGD + GGDVE EDGGV
Sbjct: 130 VDGRDGGGVGDLLAVVGGVGGEAVVVDADSGVGVVGG------GGDDVWGGDVEGEDGGV 189
Query: 121 LDDEFGLCRLKNGPN 123
L+DE GL L++GP+
Sbjct: 190 LEDESGLVGLEDGPD 198
BLAST of CmaCh03G011220 vs. ExPASy TrEMBL
Match:
A0A5J4ZLG7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015942 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 66/134 (49.25%), Postives = 78/134 (58.21%), Query Frame = 0
Query: 2 VAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDE------------ 61
V A E ++ S ++D D Q DG GLVL E AVV R R+ + DE
Sbjct: 485 VLASCEASNFPSHPSIDLDYQHDGTGGLVLAEGDAVVRRHRHVRSGDEWRPNVDVFVALV 544
Query: 62 -RLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGVL 121
R G DLLV V VD+E VVVD+DLVVRVP DGDLD GG+ I GGDVE EDGGVL
Sbjct: 545 SRWYGGVVCDLLVAVASVDVEFVVVDADLVVRVPRVDGDLDVGGEIIGGGDVEGEDGGVL 604
Query: 122 DDEFGLCRLKNGPN 123
DE L++GP+
Sbjct: 605 KDEAWFPGLEDGPD 618
BLAST of CmaCh03G011220 vs. NCBI nr
Match:
TYK04331.1 (hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 177.9 bits (450), Expect = 5.1e-41
Identity = 96/135 (71.11%), Postives = 108/135 (80.00%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDE----------- 60
MV AGDEG DLESDATV+F+GQ D +GL+LI+ GAVVG DRNGVTD+E
Sbjct: 1 MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
Query: 61 --RLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
RLN GTESDLLV V+GVD+EAVV+DSDLVV V G DGDLDTGGD++S GD+EE DGGV
Sbjct: 61 VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120
Query: 121 LDDEFGLCRLKNGPN 123
LDDEFGLCRLKNGPN
Sbjct: 121 LDDEFGLCRLKNGPN 135
BLAST of CmaCh03G011220 vs. NCBI nr
Match:
GER45898.1 (regulatory particle non-ATPase 10 [Striga asiatica])
HSP 1 Score: 114.8 bits (286), Expect = 5.3e-22
Identity = 75/135 (55.56%), Postives = 86/135 (63.70%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDERLND------- 60
+V+AGDEGAD DA VDFDG+ DGA GLVL E AVVG D + V DE D
Sbjct: 70 VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129
Query: 61 ------GTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
G SDLLV V D EAVVVD D VRV GDGDL+ GGD + GGDVE+EDGGV
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189
Query: 121 LDDEFGLCRLKNGPN 123
L+DE G L++GP+
Sbjct: 190 LEDESGFSGLEDGPH 204
BLAST of CmaCh03G011220 vs. NCBI nr
Match:
GER41841.1 (hypothetical protein STAS_18573 [Striga asiatica])
HSP 1 Score: 97.8 bits (242), Expect = 6.7e-17
Identity = 70/135 (51.85%), Postives = 80/135 (59.26%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDER---------L 60
MVAAGDEG D D D DG+ DGA GLVL E AVVG D + V +ER L
Sbjct: 70 MVAAGDEGTDPPLDPAGDLDGEADGAGGLVLAEGEAVVGCDGDVVAVEERGPDVEVMVAL 129
Query: 61 NDGTE----SDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
DG + DLL V GV EAVVVD+D V V GG GGD + GGDVE EDGGV
Sbjct: 130 VDGRDGGGVGDLLAVVGGVGGEAVVVDADSGVGVVGG------GGDDVWGGDVEGEDGGV 189
Query: 121 LDDEFGLCRLKNGPN 123
L+DE GL L++GP+
Sbjct: 190 LEDESGLVGLEDGPD 198
BLAST of CmaCh03G011220 vs. NCBI nr
Match:
KAA8518468.1 (hypothetical protein F0562_015942 [Nyssa sinensis])
HSP 1 Score: 97.8 bits (242), Expect = 6.7e-17
Identity = 66/134 (49.25%), Postives = 78/134 (58.21%), Query Frame = 0
Query: 2 VAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDE------------ 61
V A E ++ S ++D D Q DG GLVL E AVV R R+ + DE
Sbjct: 485 VLASCEASNFPSHPSIDLDYQHDGTGGLVLAEGDAVVRRHRHVRSGDEWRPNVDVFVALV 544
Query: 62 -RLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGVL 121
R G DLLV V VD+E VVVD+DLVVRVP DGDLD GG+ I GGDVE EDGGVL
Sbjct: 545 SRWYGGVVCDLLVAVASVDVEFVVVDADLVVRVPRVDGDLDVGGEIIGGGDVEGEDGGVL 604
Query: 122 DDEFGLCRLKNGPN 123
DE L++GP+
Sbjct: 605 KDEAWFPGLEDGPD 618
BLAST of CmaCh03G011220 vs. NCBI nr
Match:
RXH76386.1 (hypothetical protein DVH24_019274 [Malus domestica])
HSP 1 Score: 97.4 bits (241), Expect = 8.8e-17
Identity = 65/135 (48.15%), Postives = 81/135 (60.00%), Query Frame = 0
Query: 1 MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTDDE---------- 60
MV GDEGADL D V D Q++ LVL +S VV D + G D+
Sbjct: 1 MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60
Query: 61 --RLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
R ++ E DLL V VD+E VVVD+DLVVRV GGDGDL+ GG+ + GG VE EDG V
Sbjct: 61 VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120
Query: 121 LDDEFGLCRLKNGPN 123
L+DE GL L++GP+
Sbjct: 121 LEDEAGLGGLEDGPH 135
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BXB8 | 2.5e-41 | 71.11 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KKM0 | 6.1e-40 | 69.63 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1 | [more] |
A0A5A7QLV4 | 2.6e-22 | 55.56 | Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 ... | [more] |
A0A5A7QCZ2 | 3.3e-17 | 51.85 | Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_18573 PE=4 SV=1 | [more] |
A0A5J4ZLG7 | 3.3e-17 | 49.25 | Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015942 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
TYK04331.1 | 5.1e-41 | 71.11 | hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa] | [more] |
GER45898.1 | 5.3e-22 | 55.56 | regulatory particle non-ATPase 10 [Striga asiatica] | [more] |
GER41841.1 | 6.7e-17 | 51.85 | hypothetical protein STAS_18573 [Striga asiatica] | [more] |
KAA8518468.1 | 6.7e-17 | 49.25 | hypothetical protein F0562_015942 [Nyssa sinensis] | [more] |
RXH76386.1 | 8.8e-17 | 48.15 | hypothetical protein DVH24_019274 [Malus domestica] | [more] |
Match Name | E-value | Identity | Description | |