CmaCh03G010820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G010820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein IDA-LIKE 2
Location	Cma_Chr03: 7418157 .. 7418414 (-)
RNA-Seq Expression	CmaCh03G010820
Synteny	CmaCh03G010820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGTGTTCGTGGGTGGAGGAAGAACAAGGAAGCTTGCTTGGATGTTATTGGTGATGTTGTTGATGAACGGGGAGCTACTGAGTTGGTGCAATGGGTACCCAACCAAGCACGCCTTGTTCTTCAAGTTGAAGCCCAAAAAGCCTCATTCATACGGCCATTTCTTCGGATTCTTGCCCAGAAGAATACCCATTCCAGCCTCTGGTCCTTCAAGGAAACACAACGATATTGGATTAAGAAGCTGGAGAGCGCCTTGA

mRNA sequence

ATGATCGTGTTCGTGGGTGGAGGAAGAACAAGGAAGCTTGCTTGGATGTTATTGGTGATGTTGTTGATGAACGGGGAGCTACTGAGTTGGTGCAATGGGTACCCAACCAAGCACGCCTTGTTCTTCAAGTTGAAGCCCAAAAAGCCTCATTCATACGGCCATTTCTTCGGATTCTTGCCCAGAAGAATACCCATTCCAGCCTCTGGTCCTTCAAGGAAACACAACGATATTGGATTAAGAAGCTGGAGAGCGCCTTGA

Coding sequence (CDS)

ATGATCGTGTTCGTGGGTGGAGGAAGAACAAGGAAGCTTGCTTGGATGTTATTGGTGATGTTGTTGATGAACGGGGAGCTACTGAGTTGGTGCAATGGGTACCCAACCAAGCACGCCTTGTTCTTCAAGTTGAAGCCCAAAAAGCCTCATTCATACGGCCATTTCTTCGGATTCTTGCCCAGAAGAATACCCATTCCAGCCTCTGGTCCTTCAAGGAAACACAACGATATTGGATTAAGAAGCTGGAGAGCGCCTTGA

Protein sequence

MIVFVGGGRTRKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRAP

Homology

[Close]

BLAST of CmaCh03G010820 vs. ExPASy Swiss-Prot
Match: Q6DUW9 (Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 17 LLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPH------SYGHFFGFLPRRIPIPASGP 76
          +L++L++   LL +CNG  T +   F  KP K H      S   F GFLPR  P+PASGP
Sbjct: 23 ILLLLIL---LLGFCNGART-NTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGP 82

Query: 77 SRKHNDIGLRSW 83
          SRKHNDIGL SW
Sbjct: 83 SRKHNDIGLLSW 90

[Close]

BLAST of CmaCh03G010820 vs. ExPASy Swiss-Prot
Match: Q6DUW6 (Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 11 RKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHS-----YGHFFGFLPRRIPI 70
          R  A++LL++ L     +  C+      +  F   P   HS      GHF GFLPR +P+
Sbjct: 17 RPQAFLLLILCLF---FIHHCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPV 76

Query: 71 PASGPSRKHNDIGLRSWRAP 86
          PAS PSRKHNDIG+++  +P
Sbjct: 77 PASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of CmaCh03G010820 vs. ExPASy Swiss-Prot
Match: Q6DUW7 (Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 17 LLVMLLMNGELLSWCNGYPTKHALFFKLKPKK------PHSYGH----------FFGFLP 76
          +LV+LL+   LLS CNG  T +       PK+      PH + H          F G LP
Sbjct: 19 ILVLLLV---LLSCCNGARTTNVFNTSSPPKQKDVVSPPHDHVHHQVQDHKSVQFLGSLP 78

Query: 77 RRIPIPASGPSRKHNDIGLRS 82
          R+ P+P SGPSRKHN+IGL S
Sbjct: 79 RQFPVPTSGPSRKHNEIGLSS 96

[Close]

BLAST of CmaCh03G010820 vs. ExPASy Swiss-Prot
Match: Q6DUW8 (Protein IDA-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=IDL5 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 0


Query: 8  GRTRKLAWMLLVMLLMNGELLSW--CN-------GYPTKHALFFKLKPKKPHSYGH---- 67
          G  R  A M+LV+++M   + SW  C           ++   FFK++   P ++ H    
Sbjct: 2  GNKRIKAMMILVVMIM--MVFSWRICEADSLRRYSSSSRPQRFFKVRRPNPRNHHHQNQG 61

Query: 68 ----------FFGFLPRRIPIPASGPSRKHNDIGLR 81
                    F GFLP+ +PIP S PSRKHN  GL+
Sbjct: 62 FNGDDYPPESFSGFLPKTLPIPHSAPSRKHNVYGLQ 95

[Close]

BLAST of CmaCh03G010820 vs. ExPASy TrEMBL
Match: A0A6J5V5G9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38032 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.1e-15
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 10 TRKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIPIPASG 69
          +R+   +LLV L +     +  N + ++ A  FKLKPK  HS GHF GFLPRRIPIPASG
Sbjct: 3  SRRRPVILLVCLFLTFIFTNLGNCHASRTAQVFKLKPKYQHS-GHFSGFLPRRIPIPASG 62

Query: 70 PSRKHNDIGLRSWRAP 86
          PSRKHNDIGLRSWR+P
Sbjct: 63 PSRKHNDIGLRSWRSP 77

[Close]

BLAST of CmaCh03G010820 vs. ExPASy TrEMBL
Match: A0A0A0KFQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 16 MLLVMLLMNGE---LLSWCNG------------YPTKHALFFKLKPKKPHS--YGHFFGF 75
          +L++MLLMN E   L+  CN                + +   KLKPK  ++  YGHFFGF
Sbjct: 3  LLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFFGF 62

Query: 76 LPRRIPIPASGPSRKHNDIGLRSWRAP 86
          LPRRIPIPASGPSRKHNDIGLRSWR+P
Sbjct: 63 LPRRIPIPASGPSRKHNDIGLRSWRSP 89

[Close]

BLAST of CmaCh03G010820 vs. ExPASy TrEMBL
Match: M5W2Q5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G159700 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 16 MLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIPIPASGPSRKHN 75
          +LLV L +     +  N + ++ A  FKLKPK  HS GHF GFLPRRIPIPASGPSRKHN
Sbjct: 9  ILLVCLFLTFIFTNLGNCHASRTAQVFKLKPKYQHS-GHFSGFLPRRIPIPASGPSRKHN 68

Query: 76 DIGLRSWRAP 86
          DIGLRSWR+P
Sbjct: 69 DIGLRSWRSP 77

[Close]

BLAST of CmaCh03G010820 vs. ExPASy TrEMBL
Match: A0A6A1VC18 (Protein IDA-LIKE 2 OS=Morella rubra OX=262757 GN=CJ030_MR6G024199 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-14
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 5  VGGGRTRKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIP 64
          VG G   +L W+L         +L  C+G  T +   FKL+PK  +S GHF GFLPRRIP
Sbjct: 3  VGRGPVVRLIWLLFF-------ILGHCHGARTTNV--FKLEPKSQYS-GHFLGFLPRRIP 62

Query: 65 IPASGPSRKHNDIGLRSWRAP 86
          IP SGPSRKHNDIGL+SWR+P
Sbjct: 63 IPVSGPSRKHNDIGLKSWRSP 73

[Close]

BLAST of CmaCh03G010820 vs. ExPASy TrEMBL
Match: A0A7N2LYR6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 12 KLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIPIPASGPS 71
          +L W+ L+++ + G     C+G  ++    FK KPK  +S GHF GFLPRRIPIPASGPS
Sbjct: 10 RLIWLFLLLVFIVGN----CHG--SRVTNVFKFKPKSQYS-GHFLGFLPRRIPIPASGPS 69

Query: 72 RKHNDIGLRSWRAP 86
          RKHNDIGL+SWR+P
Sbjct: 70 RKHNDIGLKSWRSP 76

[Close]

BLAST of CmaCh03G010820 vs. NCBI nr
Match: KAG7034431.1 (Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MIVFVGGGRTRKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLP 60
          MIVFVGGGRTRKLAWMLLVMLLMNGELL  CNGYPTKHALFFKLKPKKPHSYGHFFGFLP
Sbjct: 1  MIVFVGGGRTRKLAWMLLVMLLMNGELLICCNGYPTKHALFFKLKPKKPHSYGHFFGFLP 60

Query: 61 RRIPIPASGPSRKHNDIGLRSWRAP 86
          RRIPIPASGPSRKHNDIGLRSWRAP
Sbjct: 61 RRIPIPASGPSRKHNDIGLRSWRAP 85

[Close]

BLAST of CmaCh03G010820 vs. NCBI nr
Match: KAE8647464.1 (hypothetical protein Csa_004278 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 9   RTRKLAWM--LLVMLLMNGE---LLSWCNG------------YPTKHALFFKLKPKKPHS 68
           R + ++WM  L++MLLMN E   L+  CN                + +   KLKPK  ++
Sbjct: 24  RKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNN 83

Query: 69  --YGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRAP 86
             YGHFFGFLPRRIPIPASGPSRKHNDIGLRSWR+P
Sbjct: 84  YYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 119

[Close]

BLAST of CmaCh03G010820 vs. NCBI nr
Match: CAB4283463.1 (unnamed protein product [Prunus armeniaca] >CAB4313892.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 10 TRKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIPIPASG 69
          +R+   +LLV L +     +  N + ++ A  FKLKPK  HS GHF GFLPRRIPIPASG
Sbjct: 3  SRRRPVILLVCLFLTFIFTNLGNCHASRTAQVFKLKPKYQHS-GHFSGFLPRRIPIPASG 62

Query: 70 PSRKHNDIGLRSWRAP 86
          PSRKHNDIGLRSWR+P
Sbjct: 63 PSRKHNDIGLRSWRSP 77

[Close]

BLAST of CmaCh03G010820 vs. NCBI nr
Match: ONI01802.1 (hypothetical protein PRUPE_6G159700 [Prunus persica])

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 16 MLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIPIPASGPSRKHN 75
          +LLV L +     +  N + ++ A  FKLKPK  HS GHF GFLPRRIPIPASGPSRKHN
Sbjct: 9  ILLVCLFLTFIFTNLGNCHASRTAQVFKLKPKYQHS-GHFSGFLPRRIPIPASGPSRKHN 68

Query: 76 DIGLRSWRAP 86
          DIGLRSWR+P
Sbjct: 69 DIGLRSWRSP 77

[Close]

BLAST of CmaCh03G010820 vs. NCBI nr
Match: KAB1210294.1 (Protein IDA-LIKE 2 [Morella rubra])

HSP 1 Score: 87.0 bits (214), Expect = 8.3e-14
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 5  VGGGRTRKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHSYGHFFGFLPRRIP 64
          VG G   +L W+L         +L  C+G  T +   FKL+PK  +S GHF GFLPRRIP
Sbjct: 3  VGRGPVVRLIWLLFF-------ILGHCHGARTTNV--FKLEPKSQYS-GHFLGFLPRRIP 62

Query: 65 IPASGPSRKHNDIGLRSWRAP 86
          IP SGPSRKHNDIGL+SWR+P
Sbjct: 63 IPVSGPSRKHNDIGLKSWRSP 73

[Close]

BLAST of CmaCh03G010820 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 67.0 bits (162), Expect = 8.3e-12
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 17 LLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPH------SYGHFFGFLPRRIPIPASGP 76
          +L++L++   LL +CNG  T +   F  KP K H      S   F GFLPR  P+PASGP
Sbjct: 23 ILLLLIL---LLGFCNGART-NTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGP 82

Query: 77 SRKHNDIGLRSW 83
          SRKHNDIGL SW
Sbjct: 83 SRKHNDIGLLSW 90

[Close]

BLAST of CmaCh03G010820 vs. TAIR 10
Match: AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-10
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 11 RKLAWMLLVMLLMNGELLSWCNGYPTKHALFFKLKPKKPHS-----YGHFFGFLPRRIPI 70
          R  A++LL++ L     +  C+      +  F   P   HS      GHF GFLPR +P+
Sbjct: 17 RPQAFLLLILCLF---FIHHCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPV 76

Query: 71 PASGPSRKHNDIGLRSWRAP 86
          PAS PSRKHNDIG+++  +P
Sbjct: 77 PASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of CmaCh03G010820 vs. TAIR 10
Match: AT5G09805.1 (inflorescence deficient in abscission (IDA)-like 3 )

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 17 LLVMLLMNGELLSWCNGYPTKHALFFKLKPKK------PHSYGH----------FFGFLP 76
          +LV+LL+   LLS CNG  T +       PK+      PH + H          F G LP
Sbjct: 19 ILVLLLV---LLSCCNGARTTNVFNTSSPPKQKDVVSPPHDHVHHQVQDHKSVQFLGSLP 78

Query: 77 RRIPIPASGPSRKHNDIGLRS 82
          R+ P+P SGPSRKHN+IGL S
Sbjct: 79 RQFPVPTSGPSRKHNEIGLSS 96

[Close]

BLAST of CmaCh03G010820 vs. TAIR 10
Match: AT1G76952.1 (inflorescence deficient in abscission (IDA)-like 5 )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 0


Query: 8  GRTRKLAWMLLVMLLMNGELLSW--CN-------GYPTKHALFFKLKPKKPHSYGH---- 67
          G  R  A M+LV+++M   + SW  C           ++   FFK++   P ++ H    
Sbjct: 2  GNKRIKAMMILVVMIM--MVFSWRICEADSLRRYSSSSRPQRFFKVRRPNPRNHHHQNQG 61

Query: 68 ----------FFGFLPRRIPIPASGPSRKHNDIGLR 81
                    F GFLP+ +PIP S PSRKHN  GL+
Sbjct: 62 FNGDDYPPESFSGFLPKTLPIPHSAPSRKHNVYGLQ 95

The following BLAST results are available for this feature:

BLAST of CmaCh03G010820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DUW9	1.2e-10	51.39	Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1	[more]
Q6DUW6	1.1e-08	40.00	Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1	[more]
Q6DUW7	1.6e-07	43.21	Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1	[more]
Q6DUW8	2.8e-04	33.33	Protein IDA-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=IDL5 PE=2 SV=2	[more]

BLAST of CmaCh03G010820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5V5G9	8.1e-15	60.53	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38032 PE=4 S...	[more]
A0A0A0KFQ3	1.4e-14	55.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1	[more]
M5W2Q5	1.8e-14	64.29	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G159700 PE=4 SV=1	[more]
A0A6A1VC18	4.0e-14	55.56	Protein IDA-LIKE 2 OS=Morella rubra OX=262757 GN=CJ030_MR6G024199 PE=4 SV=1	[more]
A0A7N2LYR6	1.2e-13	56.76	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmaCh03G010820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034431.1	2.1e-41	97.65	Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAE8647464.1	2.6e-15	53.13	hypothetical protein Csa_004278 [Cucumis sativus]	[more]
CAB4283463.1	1.7e-14	60.53	unnamed protein product [Prunus armeniaca] >CAB4313892.1 unnamed protein product...	[more]
ONI01802.1	3.7e-14	64.29	hypothetical protein PRUPE_6G159700 [Prunus persica]	[more]
KAB1210294.1	8.3e-14	55.56	Protein IDA-LIKE 2 [Morella rubra]	[more]

BLAST of CmaCh03G010820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64667.1	8.3e-12	51.39	inflorescence deficient in abscission (IDA)-like 2	[more]
AT3G18715.1	7.8e-10	40.00	inflorescence deficient in abscission (IDA)-like 4	[more]
AT5G09805.1	1.1e-08	43.21	inflorescence deficient in abscission (IDA)-like 3	[more]
AT1G76952.1	2.0e-05	33.33	inflorescence deficient in abscission (IDA)-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 14..85
None	No IPR available	PANTHER	PTHR33599:SF15	PROTEIN IDA-LIKE 2	coord: 14..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G010820.1	CmaCh03G010820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission