CmaCh03G010780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G010780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type E3 ubiquitin transferase
Location	Cma_Chr03: 7390710 .. 7391507 (-)
RNA-Seq Expression	CmaCh03G010780
Synteny	CmaCh03G010780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCACTAATTCAAGAAGGCTTCTCCTTCCCGCCGTGACCGCCAGTCCGCCGGTGTCAGTGCAGCTGCGACCTGGGTTCGGGAGCTTCGACATGAACGTAGTGATGGTACTTTCGGTTCTCCTCTGTGCTCTAGTTTGCTCTCTGGGTCTCAACGCGATTCTAAAATGCGCGTTGCGGTGTTCCAGTTTGCTGGCAACGATGTCGGAAGGACGTGGCGGTGGGATTTTGGCGGTGCATCCGAAAGGTGTTCGACGAAATGTCTTAAAGAAATTTCCGACGGTGGAATACCCAAAAGAGGGGAATAAATTAAGGGGAATCGATGGGGAATGCGTGATTTGTTTGTCGGAGTTCGAGGGTGGGGATCGGGTGCGTGTATTGCCCAAATGCTTCCATGGCTTCCACGTTCATTGCATTGATAAATGGCTGAGTTCCCATAATTCTTGCCCCAAGTGCCGCAATTGCCTCAACACTTGCCATAAGATCGCCGCTGGAGGCAGCCAGGAGGCGCCTGTGACGGCGAGTTCATCCCCTGTTGACCCGTCGCCGCCGCCGCCGCCTCCGGGGGAGGAAGTGGTTGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGTTTGGTATGCAACTATAGGTAAAGTAAGTAGTAGATGAGATTGAAGTGGGAAGTGGGGCTGTGGGGTTGGGCTTTTTGTGATTGATGGAGCATTTTGGTTACTTTTTGCTTTAGCAAGTAAGCATCTTTTTTTTTTCTTTTTAAAATTAATTAGAATTATTACAAGCCTAGCCAAGATTAG

mRNA sequence

ATGTCTATCACTAATTCAAGAAGGCTTCTCCTTCCCGCCGTGACCGCCAGTCCGCCGGTGTCAGTGCAGCTGCGACCTGGGTTCGGGAGCTTCGACATGAACGTAGTGATGGTACTTTCGGTTCTCCTCTGTGCTCTAGTTTGCTCTCTGGGTCTCAACGCGATTCTAAAATGCGCGTTGCGGTGTTCCAGTTTGCTGGCAACGATGTCGGAAGGACGTGGCGGTGGGATTTTGGCGGTGCATCCGAAAGGTGTTCGACGAAATGTCTTAAAGAAATTTCCGACGGTGGAATACCCAAAAGAGGGGAATAAATTAAGGGGAATCGATGGGGAATGCGTGATTTGTTTGTCGGAGTTCGAGGGTGGGGATCGGGTGCGTGTATTGCCCAAATGCTTCCATGGCTTCCACGTTCATTGCATTGATAAATGGCTGAGTTCCCATAATTCTTGCCCCAAGTGCCGCAATTGCCTCAACACTTGCCATAAGATCGCCGCTGGAGGCAGCCAGGAGGCGCCTGTGACGGCGAGTTCATCCCCTGTTGACCCGTCGCCGCCGCCGCCGCCTCCGGGGGAGGAAGTGGTTGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGTTTGAATTATTACAAGCCTAGCCAAGATTAG

Coding sequence (CDS)

ATGTCTATCACTAATTCAAGAAGGCTTCTCCTTCCCGCCGTGACCGCCAGTCCGCCGGTGTCAGTGCAGCTGCGACCTGGGTTCGGGAGCTTCGACATGAACGTAGTGATGGTACTTTCGGTTCTCCTCTGTGCTCTAGTTTGCTCTCTGGGTCTCAACGCGATTCTAAAATGCGCGTTGCGGTGTTCCAGTTTGCTGGCAACGATGTCGGAAGGACGTGGCGGTGGGATTTTGGCGGTGCATCCGAAAGGTGTTCGACGAAATGTCTTAAAGAAATTTCCGACGGTGGAATACCCAAAAGAGGGGAATAAATTAAGGGGAATCGATGGGGAATGCGTGATTTGTTTGTCGGAGTTCGAGGGTGGGGATCGGGTGCGTGTATTGCCCAAATGCTTCCATGGCTTCCACGTTCATTGCATTGATAAATGGCTGAGTTCCCATAATTCTTGCCCCAAGTGCCGCAATTGCCTCAACACTTGCCATAAGATCGCCGCTGGAGGCAGCCAGGAGGCGCCTGTGACGGCGAGTTCATCCCCTGTTGACCCGTCGCCGCCGCCGCCGCCTCCGGGGGAGGAAGTGGTTGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGTTTGAATTATTACAAGCCTAGCCAAGATTAG

Protein sequence

MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPVDPSPPPPPPGEEVVVNVVIAPVEREGLNYYKPSQD

Homology

[Close]

BLAST of CmaCh03G010780 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.2e-41
Identity = 100/201 (49.75%), Postives = 127/201 (63.18%), Query Frame = 0


Query: 6   SRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSL 65
           SR+LL      SP  +     G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRCS+L
Sbjct: 27  SRKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNL 86

Query: 66  LATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRV 125
           + + + G    +   +  GV+R  LK F TV Y  E N L G+D EC ICLSEF   +RV
Sbjct: 87  VPSEAGGDNYPVRLTN-TGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVAEERV 146

Query: 126 RVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSPVDPSP 185
           ++LP C HGFHV CIDKWLSSH+SCP CR+CL  TC KIA     +   T+S +      
Sbjct: 147 KLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIA-----DCSQTSSLNSTQ--- 206

Query: 186 PPPPPGEEVVVNVVIAPVERE 206
              PP + +++   IAP+E E
Sbjct: 207 ---PPQDSIILQ--IAPLEPE 212

[Close]

BLAST of CmaCh03G010780 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-34
Identity = 88/194 (45.36%), Postives = 118/194 (60.82%), Query Frame = 0


Query: 34  NVVMVLSVLLCALVCSLGLNAILKCALR------CSSLLATMSEGRGGGILAVHPKGVRR 93
           NV+M+LS+L+C ++C LGL+ I++CALR       S  + ++S  RG        KG+++
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS-----NKGIKK 116

Query: 94  NVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSH 153
             L+ FP V Y  E N L G+D ECVICLS+F  G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 176

Query: 154 NSCPKCRNCL-NTCHKIAAGGSQEAPVTASSS--------PVDPSP------PPPPPGEE 207
            +CPKCRNCL  TC KI    SQ   VTA  +        P++P+        P  P E 
Sbjct: 177 LTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLEPTE- 236

[Close]

BLAST of CmaCh03G010780 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 82/188 (43.62%), Postives = 114/188 (60.64%), Query Frame = 0


Query: 34  NVVMVLSVLLCALVCSLGLNAILKCALRCSSL------LATMSEGRGGGILAVHPKGVRR 93
           NV+M+LSVL+C ++C LGL+ I++CA R SS       ++++S  R         KG+++
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSS-----NKGIKK 116

Query: 94  NVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSH 153
             L+ FP V Y +E N L GI  ECVICLS+F  G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHH 176

Query: 154 NSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSPVDPSPPPPPPGEEVVVNVVIAPVEREG 213
            +CPKCR+CL  TC KI    SQ   + ++            P E V+V   I P+E EG
Sbjct: 177 LTCPKCRHCLVETCQKILGDFSQADSMAST------------PTESVIVR--IDPLEPEG 224

[Close]

BLAST of CmaCh03G010780 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 81/180 (45.00%), Postives = 105/180 (58.33%), Query Frame = 0


Query: 34  NVVMVLSVLLCALVCSLGLNAILKCALR------CSSLLATMSEGRGGGILAVHPKGVRR 93
           NV+M+LSVL+C ++C LGL+ I++CA R       S  +A +S   G        KG+ +
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSS-----NKGINK 117

Query: 94  NVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSH 153
             L+ FP V Y  E N L G+  ECVICLS+F  G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 118 KALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH 177

Query: 154 NSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSPVDPSPPPPPPGEEVVVNVVIAPVEREG 207
            +CPKCR+CL  TC KI    SQ   V A+            P   V+V   IAP+E EG
Sbjct: 178 LTCPKCRHCLVETCQKILGDFSQADQVAAT------------PTASVIVR--IAPLEPEG 217

[Close]

BLAST of CmaCh03G010780 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-29
Identity = 73/172 (42.44%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 26  PGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA------LRCSSLLATMSEGRGGGILA 85
           P   +   NV+M+LS+LLC ++CSLGL+ I++CA         S  ++  S  R   +  
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 86  VHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHC 145
              KG+++  LK  P V Y  E N L G+  ECVICLS+F  G+++RVLPKC HGFH+ C
Sbjct: 103 --NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRC 162

Query: 146 IDKWLSSHNSCPKCRNCL-NTCHKIAA---GGSQEAPVTASSSPVDPSPPPP 188
           IDKWL+ H +CPKCR+CL +TC K+ +      Q A     S  +  SP  P
Sbjct: 163 IDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATESIDIRISPLEP 209

[Close]

BLAST of CmaCh03G010780 vs. ExPASy TrEMBL
Match: A0A6J1IR86 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111478013 PE=3 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.1e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60

Query: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120
           RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE
Sbjct: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPV 180
           GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPV
Sbjct: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPV 180

Query: 181 DPSPPPPPPGEEVVVNVVIAPVEREGL 208
           DPSPPPPPPGEEVVVNVVIAPVEREGL
Sbjct: 181 DPSPPPPPPGEEVVVNVVIAPVEREGL 207

[Close]

BLAST of CmaCh03G010780 vs. ExPASy TrEMBL
Match: A0A6J1GCL7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.1e-100
Identity = 190/208 (91.35%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSITNSRRLLLPAVTASPPVS Q RPGFGSFDMNVVMVLSVLLCALVCSLGLNA+LKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNALLKCAL 60

Query: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120
           RCSSLLATMS GRGGGI AVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE
Sbjct: 61  RCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSP 180
           GGDRVRVLP CFHGFHVHCIDKWLSSHNSCPKCRNCL +TCHKIA+GGSQEAP       
Sbjct: 121 GGDRVRVLPICFHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAP-DGEFIA 180

Query: 181 VDPSPPPPPPGEEVVVNVVIAPVEREGL 208
           +DP PPPPPPGEEVVVNVVIAPVEREGL
Sbjct: 181 IDP-PPPPPPGEEVVVNVVIAPVEREGL 206

[Close]

BLAST of CmaCh03G010780 vs. ExPASy TrEMBL
Match: A0A5A7SLG8 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00380 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.3e-87
Identity = 172/218 (78.90%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVT--ASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSI+NSRR LLP+ T  ASPP   Q RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120
           ALRCS+LLAT+S GRGGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEGGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASS 180
           FE GDRVRVLPKC+HGFHVHCIDKWLSSH SCPKCRNCL +TCHKIAAG  QE PVT ++
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 SPVDPSPP-PPPPGEEVVVNVVIAPVEREG-LNYYKPS 214
           +  + S    PP  EEV VNVVIAPVEREG +N Y+ S
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRES 218

[Close]

BLAST of CmaCh03G010780 vs. ExPASy TrEMBL
Match: A0A1S3B203 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.3e-87
Identity = 172/218 (78.90%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVT--ASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSI+NSRR LLP+ T  ASPP   Q RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120
           ALRCS+LLAT+S GRGGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEGGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASS 180
           FE GDRVRVLPKC+HGFHVHCIDKWLSSH SCPKCRNCL +TCHKIAAG  QE PVT ++
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 SPVDPSPP-PPPPGEEVVVNVVIAPVEREG-LNYYKPS 214
           +  + S    PP  EEV VNVVIAPVEREG +N Y+ S
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRES 218

[Close]

BLAST of CmaCh03G010780 vs. ExPASy TrEMBL
Match: A0A0A0KF92 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.4e-85
Identity = 168/217 (77.42%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVT--ASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSI+NSRR L+P+ T  A+PP   Q RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120
           ALRCS+LLAT+S GRGGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEGGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASS 180
           FE GDRVRVLPKC+HGFHVHCIDKWLSSH SCPKCRNCL +TCHKI AG +QE  VT ++
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAA 180

Query: 181 SPVDPSPPPPPPGEEVVVNVVIAPVEREG-LNYYKPS 214
                S   PP  EEV VNVVIAPVEREG +N Y+ S
Sbjct: 181 E--SSSSVEPPRAEEVGVNVVIAPVEREGMINNYRES 215

[Close]

BLAST of CmaCh03G010780 vs. NCBI nr
Match: XP_022977833.1 (RING-H2 finger protein ATL78-like [Cucurbita maxima])

HSP 1 Score: 419.1 bits (1076), Expect = 2.3e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60

Query: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120
           RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE
Sbjct: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPV 180
           GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPV
Sbjct: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPV 180

Query: 181 DPSPPPPPPGEEVVVNVVIAPVEREGL 208
           DPSPPPPPPGEEVVVNVVIAPVEREGL
Sbjct: 181 DPSPPPPPPGEEVVVNVVIAPVEREGL 207

[Close]

BLAST of CmaCh03G010780 vs. NCBI nr
Match: XP_023544734.1 (RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100
Identity = 192/208 (92.31%), Postives = 196/208 (94.23%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSITNSRRLLLPAVTASPPVS QLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60

Query: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120
           RCSSLLATMS G GGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE
Sbjct: 61  RCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSP 180
           GGDRVRVLPKC+HGFHVHCIDKWLSSHNSCPKCRNCL ++CHKIAAGGSQEAP       
Sbjct: 121 GGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAP-DGEFIA 180

Query: 181 VDPSPPPPPPGEEVVVNVVIAPVEREGL 208
           +DP PPPPPPGEEVVVNVVIAPVEREGL
Sbjct: 181 IDP-PPPPPPGEEVVVNVVIAPVEREGL 206

[Close]

BLAST of CmaCh03G010780 vs. NCBI nr
Match: KAG7034428.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.8 bits (961), Expect = 5.0e-100
Identity = 194/216 (89.81%), Postives = 197/216 (91.20%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSITNSRRLLLPAVTASPPV  Q RPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVLAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60

Query: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120
           RCSSLLATMS GRGGGI AVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICL EFE
Sbjct: 61  RCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLLEFE 120

Query: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSP 180
           GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL +TCHKIA+GGSQEAP       
Sbjct: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAP-DGEFIA 180

Query: 181 VDPS--PPPPPPGEEVVVNVVIAPVEREGL--NYYK 212
           +DPS  PPPPPPGEEVVVNVVIAPVEREGL  NY K
Sbjct: 181 IDPSPPPPPPPPGEEVVVNVVIAPVEREGLVCNYSK 215

[Close]

BLAST of CmaCh03G010780 vs. NCBI nr
Match: XP_022949633.1 (RING-H2 finger protein ATL78-like [Cucurbita moschata])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 190/208 (91.35%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSITNSRRLLLPAVTASPPVS Q RPGFGSFDMNVVMVLSVLLCALVCSLGLNA+LKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNALLKCAL 60

Query: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120
           RCSSLLATMS GRGGGI AVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE
Sbjct: 61  RCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSP 180
           GGDRVRVLP CFHGFHVHCIDKWLSSHNSCPKCRNCL +TCHKIA+GGSQEAP       
Sbjct: 121 GGDRVRVLPICFHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAP-DGEFIA 180

Query: 181 VDPSPPPPPPGEEVVVNVVIAPVEREGL 208
           +DP PPPPPPGEEVVVNVVIAPVEREGL
Sbjct: 181 IDP-PPPPPPGEEVVVNVVIAPVEREGL 206

[Close]

BLAST of CmaCh03G010780 vs. NCBI nr
Match: KAG6604272.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 372.9 bits (956), Expect = 1.9e-99
Identity = 192/214 (89.72%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSITNSRRLLLPAVTASPPV  Q RPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVLAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60

Query: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120
           RCSSLLATMS GRGGGI AVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICL EFE
Sbjct: 61  RCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLLEFE 120

Query: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSP 180
           GGDRVRVLPKC+HGFHVHCIDKWLSSHNSCPKCRNCL +TCHKIA+GGSQEAP       
Sbjct: 121 GGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAP-DGEFIA 180

Query: 181 VDPSPPPPPPGEEVVVNVVIAPVEREGL--NYYK 212
           +DP PPPPPPGEEVVVNVVIAPVEREGL  NY K
Sbjct: 181 IDP-PPPPPPGEEVVVNVVIAPVEREGLVCNYRK 212

[Close]

BLAST of CmaCh03G010780 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-42
Identity = 100/201 (49.75%), Postives = 127/201 (63.18%), Query Frame = 0


Query: 6   SRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSL 65
           SR+LL      SP  +     G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRCS+L
Sbjct: 27  SRKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNL 86

Query: 66  LATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRV 125
           + + + G    +   +  GV+R  LK F TV Y  E N L G+D EC ICLSEF   +RV
Sbjct: 87  VPSEAGGDNYPVRLTN-TGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVAEERV 146

Query: 126 RVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSPVDPSP 185
           ++LP C HGFHV CIDKWLSSH+SCP CR+CL  TC KIA     +   T+S +      
Sbjct: 147 KLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIA-----DCSQTSSLNSTQ--- 206

Query: 186 PPPPPGEEVVVNVVIAPVERE 206
              PP + +++   IAP+E E
Sbjct: 207 ---PPQDSIILQ--IAPLEPE 212

[Close]

BLAST of CmaCh03G010780 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-35
Identity = 88/194 (45.36%), Postives = 118/194 (60.82%), Query Frame = 0


Query: 34  NVVMVLSVLLCALVCSLGLNAILKCALR------CSSLLATMSEGRGGGILAVHPKGVRR 93
           NV+M+LS+L+C ++C LGL+ I++CALR       S  + ++S  RG        KG+++
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS-----NKGIKK 116

Query: 94  NVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSH 153
             L+ FP V Y  E N L G+D ECVICLS+F  G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 176

Query: 154 NSCPKCRNCL-NTCHKIAAGGSQEAPVTASSS--------PVDPSP------PPPPPGEE 207
            +CPKCRNCL  TC KI    SQ   VTA  +        P++P+        P  P E 
Sbjct: 177 LTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLEPTE- 236

[Close]

BLAST of CmaCh03G010780 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-33
Identity = 82/188 (43.62%), Postives = 114/188 (60.64%), Query Frame = 0


Query: 34  NVVMVLSVLLCALVCSLGLNAILKCALRCSSL------LATMSEGRGGGILAVHPKGVRR 93
           NV+M+LSVL+C ++C LGL+ I++CA R SS       ++++S  R         KG+++
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSS-----NKGIKK 116

Query: 94  NVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSH 153
             L+ FP V Y +E N L GI  ECVICLS+F  G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHH 176

Query: 154 NSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSPVDPSPPPPPPGEEVVVNVVIAPVEREG 213
            +CPKCR+CL  TC KI    SQ   + ++            P E V+V   I P+E EG
Sbjct: 177 LTCPKCRHCLVETCQKILGDFSQADSMAST------------PTESVIVR--IDPLEPEG 224

[Close]

BLAST of CmaCh03G010780 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 7.4e-33
Identity = 81/180 (45.00%), Postives = 105/180 (58.33%), Query Frame = 0


Query: 34  NVVMVLSVLLCALVCSLGLNAILKCALR------CSSLLATMSEGRGGGILAVHPKGVRR 93
           NV+M+LSVL+C ++C LGL+ I++CA R       S  +A +S   G        KG+ +
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSS-----NKGINK 117

Query: 94  NVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSH 153
             L+ FP V Y  E N L G+  ECVICLS+F  G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 118 KALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH 177

Query: 154 NSCPKCRNCL-NTCHKIAAGGSQEAPVTASSSPVDPSPPPPPPGEEVVVNVVIAPVEREG 207
            +CPKCR+CL  TC KI    SQ   V A+            P   V+V   IAP+E EG
Sbjct: 178 LTCPKCRHCLVETCQKILGDFSQADQVAAT------------PTASVIVR--IAPLEPEG 217

[Close]

BLAST of CmaCh03G010780 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-30
Identity = 73/172 (42.44%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 26  PGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA------LRCSSLLATMSEGRGGGILA 85
           P   +   NV+M+LS+LLC ++CSLGL+ I++CA         S  ++  S  R   +  
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 86  VHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCFHGFHVHC 145
              KG+++  LK  P V Y  E N L G+  ECVICLS+F  G+++RVLPKC HGFH+ C
Sbjct: 103 --NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRC 162

Query: 146 IDKWLSSHNSCPKCRNCL-NTCHKIAA---GGSQEAPVTASSSPVDPSPPPP 188
           IDKWL+ H +CPKCR+CL +TC K+ +      Q A     S  +  SP  P
Sbjct: 163 IDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATESIDIRISPLEP 209

The following BLAST results are available for this feature:

BLAST of CmaCh03G010780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	4.2e-41	49.75	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	3.8e-34	45.36	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q6NML0	2.7e-32	43.62	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
Q94BY6	1.0e-31	45.00	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
Q9LS99	4.8e-29	42.44	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]

BLAST of CmaCh03G010780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IR86	1.1e-113	100.00	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111478013 P...	[more]
A0A6J1GCL7	7.1e-100	91.35	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965...	[more]
A0A5A7SLG8	5.3e-87	78.90	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B203	5.3e-87	78.90	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 ...	[more]
A0A0A0KF92	8.4e-85	77.42	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE...	[more]

BLAST of CmaCh03G010780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977833.1	2.3e-113	100.00	RING-H2 finger protein ATL78-like [Cucurbita maxima]	[more]
XP_023544734.1	1.0e-100	92.31	RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo]	[more]
KAG7034428.1	5.0e-100	89.81	RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022949633.1	1.5e-99	91.35	RING-H2 finger protein ATL78-like [Cucurbita moschata]	[more]
KAG6604272.1	1.9e-99	89.72	RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh03G010780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	3.0e-42	49.75	RING/U-box superfamily protein	[more]
AT1G49220.1	2.7e-35	45.36	RING/U-box superfamily protein	[more]
AT1G49210.1	1.9e-33	43.62	RING/U-box superfamily protein	[more]
AT1G49200.1	7.4e-33	45.00	RING/U-box superfamily protein	[more]
AT3G18773.1	3.4e-30	42.44	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 112..153 e-value: 2.1E-6 score: 37.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 111..154 e-value: 3.9E-14 score: 52.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 112..154 score: 12.120453
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 78..160 e-value: 4.3E-21 score: 76.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..192
None	No IPR available	PANTHER	PTHR46905:SF7	RING-H2 FINGER PROTEIN ATL78	coord: 5..208
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 111..154 e-value: 8.89315E-17 score: 69.2529
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 111..160
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 5..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G010780.1	CmaCh03G010780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity