CmaCh03G010700 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G010700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	TFIIS N-terminal domain-containing protein
Location	Cma_Chr03: 7369633 .. 7371704 (+)
RNA-Seq Expression	CmaCh03G010700
Synteny	CmaCh03G010700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGGTTGGATTTAGATGATTTCCGGACCATATTGGATACAGCCGGTGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTTGCTTCATTGGATTACGGCAATCAATTGAAGAATCGGAGAGACGGAATCGTTGAGAGGCTCTATGCGTTGACTTCGCCTCCTACTCGATGTCGGAATTGCGATACGGATCGCTATAACGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCCCCGTTGAGGCTAAGGAAGCTTCCCCTTCGACGCCTCAGTTCGTTGTAGTCGAAGGAGACGACGAGGGAGTAGACCCGTATGGAGGTTTGTTTGATGATGAACAGAAGAAGGTTTTAGAAATAAAGGAGCAGCTTGAAATTCCTCACCAGGTATTCTTCTTTTGATTCTGATTATCTAGAATTGTTTGATTGTTTTGGGAAATTCTCTTAACTTACCCAATTGGTGATTGTTTGGCTTGTTTCAGCCTGAAGATGCCTTGGTTGAACTGCTTCAAAACTTGGCAGACATGGATATAACATTCCAAGCTCTTAAGGTGCTTGTTTATGGTGTTTTTTCTTGTTCTTTGTGAATGTAATTCTTTTGAATTTCTGGGTTCTGTTGCTTCCTTCTTCTTCTTCTATGTTTCTTAATTGTTCTCGTTCTTGTTTTTGTATAGGAAACTGATATTGGAAGGCATGTGAACCGGTTGAGGAAGCATTCATCTAATGATGTTCGCAGATTGGTGAAACATCTTGTCAGGTTCGTATAAGCTTTACAAATGGATAAAATGGTTGATGCTTGGTAAATTTCAGAGAAGGGTTGGTGAATAATCAGCTCAAACGGTGTTAATAACTTCAATTTGTTTTGGTGTTGTTCATCAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAGACAGCTACACTCATAGGTAGCAAATATATGAACACCAGTTTTAACTTCATGATTCAGTTCCTTCAAAATGTTAATCTTAGTCACTCTGTTGCCAAAAAATTTAGCTAAGAATGGTTTCTACTGTTATTGACAGCTGATGGTGACTCACCCCAGCAAAAGGTTTCTCAAAATGGTTATCACCAGGTGAGCTGAAATCATTGATCTTATGGGTTCGGATGTTTGTTTTCTGTACGATCGTGTTTATAATGTTTCGTTGTTGTGTAGGTTCCTGATTTTGCGTACTCCCCGAATCCACACAGTGAGTATTGCATTATAATGATACGCAGATTTCAGCTTCTTGTTTCACTTGCCATGATTTTCCACGGATTGATTTGGTTTCTCATTTTGTCCCCCCCTTTTCTTTGTCTTGTTAGATGGAGGTTCTGGGTCAGATAGAAATAACGTAGAACCCGAACCGAAGGGAAAGTCCGTTCCAAGAAGAGATGCTCTGCCGAAACCAGCACAACCGGCTCCAATGTCGTCGTCATATACTCCTCAAAATGTATGGTAACCAAATTAGAGTCTTTTAACTCTATGTTTGGTTGCCAAAAATGGAGGAAGAAAATTGAACTTACGATTCTTATGCTTCCGAAAACATAACAAACTTAACTCAAACTGCATCAATTGTGTTGAAATTTGACAAAATTTGAGTGGTAGGTCTAAATTTTCTCAGGTCCTAGATGATATGCCTGGTCTTACTTACAGTCTGCCAAATTTGTCTTCAGCAAATAGCTGTTTTAGGAAGATTTTCTTATTATGTCTATTGAATTGATGGCCATTTGCAGAGACAGAAAGAACAACAGAAGGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTAGAAAAAGGCTTCAAGAAAATTACAAAGAAGCTGAAAATGGTTTGGCAACAGATTTCTTGCCTTTTATTTCGTTTCTGATTCTTTTGGAACAAATCAATACTAATTGCTCTGCTTGTCTGTTTCCTTTATCGAAGCTAAAAAGCAAAGAACAATCCAAGTAATGGACATTCATGAGATCCCAAAGCCAAAAAATACCTTCTTCTCAAAGAACAAAGGCACCGGCGGTGGCTCTCAAGGCAGACATTGGTGA

mRNA sequence

ATGGTTCGGTTGGATTTAGATGATTTCCGGACCATATTGGATACAGCCGGTGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTTGCTTCATTGGATTACGGCAATCAATTGAAGAATCGGAGAGACGGAATCGTTGAGAGGCTCTATGCGTTGACTTCGCCTCCTACTCGATGTCGGAATTGCGATACGGATCGCTATAACGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCCCCGTTGAGGCTAAGGAAGCTTCCCCTTCGACGCCTCAGTTCGTTGTAGTCGAAGGAGACGACGAGGGAGTAGACCCGTATGGAGGTTTGTTTGATGATGAACAGAAGAAGGTTTTAGAAATAAAGGAGCAGCTTGAAATTCCTCACCAGCCTGAAGATGCCTTGGTTGAACTGCTTCAAAACTTGGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAACCGGTTGAGGAAGCATTCATCTAATGATGTTCGCAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAGACAGCTACACTCATAGCTGATGGTGACTCACCCCAGCAAAAGGTTTCTCAAAATGGTTATCACCAGGTTCCTGATTTTGCGTACTCCCCGAATCCACACAATGGAGGTTCTGGGTCAGATAGAAATAACGTAGAACCCGAACCGAAGGGAAAGTCCGTTCCAAGAAGAGATGCTCTGCCGAAACCAGCACAACCGGCTCCAATGTCGTCGTCATATACTCCTCAAAATAGACAGAAAGAACAACAGAAGGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTAGAAAAAGGCTTCAAGAAAATTACAAAGAAGCTGAAAATGCTAAAAAGCAAAGAACAATCCAAGTAATGGACATTCATGAGATCCCAAAGCCAAAAAATACCTTCTTCTCAAAGAACAAAGGCACCGGCGGTGGCTCTCAAGGCAGACATTGGTGA

Coding sequence (CDS)

ATGGTTCGGTTGGATTTAGATGATTTCCGGACCATATTGGATACAGCCGGTGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTTGCTTCATTGGATTACGGCAATCAATTGAAGAATCGGAGAGACGGAATCGTTGAGAGGCTCTATGCGTTGACTTCGCCTCCTACTCGATGTCGGAATTGCGATACGGATCGCTATAACGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCCCCGTTGAGGCTAAGGAAGCTTCCCCTTCGACGCCTCAGTTCGTTGTAGTCGAAGGAGACGACGAGGGAGTAGACCCGTATGGAGGTTTGTTTGATGATGAACAGAAGAAGGTTTTAGAAATAAAGGAGCAGCTTGAAATTCCTCACCAGCCTGAAGATGCCTTGGTTGAACTGCTTCAAAACTTGGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAACCGGTTGAGGAAGCATTCATCTAATGATGTTCGCAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAGACAGCTACACTCATAGCTGATGGTGACTCACCCCAGCAAAAGGTTTCTCAAAATGGTTATCACCAGGTTCCTGATTTTGCGTACTCCCCGAATCCACACAATGGAGGTTCTGGGTCAGATAGAAATAACGTAGAACCCGAACCGAAGGGAAAGTCCGTTCCAAGAAGAGATGCTCTGCCGAAACCAGCACAACCGGCTCCAATGTCGTCGTCATATACTCCTCAAAATAGACAGAAAGAACAACAGAAGGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTAGAAAAAGGCTTCAAGAAAATTACAAAGAAGCTGAAAATGCTAAAAAGCAAAGAACAATCCAAGTAATGGACATTCATGAGATCCCAAAGCCAAAAAATACCTTCTTCTCAAAGAACAAAGGCACCGGCGGTGGCTCTCAAGGCAGACATTGGTGA

Protein sequence

MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSDRNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW

Homology

[Close]

BLAST of CmaCh03G010700 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 7.6e-93
Identity = 210/363 (57.85%), Postives = 248/363 (68.32%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS   +CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-----------TDRYNDGR--SNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGG 123
           D             R N+GR      E  +  V A        + V VE DD+  DP+ G
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVE-DDDDFDPFAG 120

Query: 124 LFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
           LFDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH S
Sbjct: 121 LFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPS 180

Query: 184 NDVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLIADGDSPQQKVSQNG-YHQVPDFAY 243
           N+VRRL K LV+KWKE VDEWV+ NQPG+ +  +LIAD DSP QK   NG   QVPDF Y
Sbjct: 181 NNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGY 240

Query: 244 SPNPHNGGSGSDRNN--VEPEPKGKSV---PRRDALPKPAQPAPMSSSYTPQNRQKEQQK 303
           SP P NG S S +N+   EPE K + V   PRR++ P PA+P+  S S     R KE  K
Sbjct: 241 SPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRES-PSPAKPSRPSPSQQTIPRDKE-HK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQG 347
           E +FD     +ARKRLQ+NY++AENAKKQRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]

BLAST of CmaCh03G010700 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-14
Identity = 116/431 (26.91%), Postives = 175/431 (40.60%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++      RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  -----------TDRYNDGRSNG-------CEIKQSPVEAKEASPSTPQFVVVEG----DD 125
                       +R   G   G        E+     E+K  S       +V      + 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGVDPYGGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRH 185
           E +      F    K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ 
Sbjct: 127 EALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKA 186

Query: 186 VNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQP----------------GEQTATLI 245
           VN LRKHSS+ +R+L K L+ +WKE+VD+WV   +                  E+ A   
Sbjct: 187 VNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAFPS 246

Query: 246 ADGDSPQQKVSQNGY---HQVPDFAYSPNP-----HNGGSGSDR---NNVEPEPKGKSVP 305
              D        NG+   H      +  NP     HN     +R   N  + +P+G  + 
Sbjct: 247 LPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEGTQMR 306

Query: 306 RRDALPKPAQPA----------PMSSS-------------------------YTPQNRQ- 347
            +DA  +  +P+          P+  S                          T Q R+ 
Sbjct: 307 IQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRKA 366

[Close]

BLAST of CmaCh03G010700 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-12
Identity = 103/396 (26.01%), Postives = 166/396 (41.92%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L++       C+  
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFS-------CK-- 67

Query: 64  DTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQ-----KK 123
                   R  GC+  +  +   EA+    + V V G  +  D      + E+      +
Sbjct: 68  ------VSRCIGCDHLELSIAGDEAA---VEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVS----QNGYHQVPD--FAYSPN 243
           K L  +WK +VD+W  +N P E   T   +G      +S    +  +   P     Y+P 
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGT---EGTPESLNLSVIDEEEAFPSPPHDLDIYAPE 247

Query: 244 PHN----------GGSGSDRNNVEPEPKGKSVPRRDALPKPAQPA--------------- 303
           P+              G+ R++VE + + KS       PK    A               
Sbjct: 248 PNGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRRE 307

Query: 304 -----PMSSSYTPQNRQKEQQKEA---------------NFDSQKLAS------------ 326
                PM  S T     K Q K++                   +KLA             
Sbjct: 308 EADVRPMKHSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPD 367

[Close]

BLAST of CmaCh03G010700 vs. ExPASy Swiss-Prot
Match: Q96MN5 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Homo sapiens OX=9606 GN=TCEANC2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-05
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 123 KEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 182
           K  LE+P Q ++ LVE LQ L     + + LK T IG  VN++RKHS ++V  L + +  
Sbjct: 46  KTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYT 105

Query: 183 KWKEIVDE 191
           +WK   ++
Sbjct: 106 EWKTFTEK 113

[Close]

BLAST of CmaCh03G010700 vs. ExPASy Swiss-Prot
Match: B0UYI1 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-04
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 123 KEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN-DVRRLVKHLV 182
           K  LE+P QP++ ++E L+ L     + + LK T IG  VN LRKHS + +++ L K + 
Sbjct: 45  KSILELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVY 104

Query: 183 RKWKEIVDE 191
           + W+  ++E
Sbjct: 105 KHWRTFIEE 113

[Close]

BLAST of CmaCh03G010700 vs. ExPASy TrEMBL
Match: A0A6J1ILB4 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita maxima OX=3661 GN=LOC111478070 PE=4 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 1.2e-194
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 346

[Close]

BLAST of CmaCh03G010700 vs. ExPASy TrEMBL
Match: A0A6J1GFA3 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita moschata OX=3662 GN=LOC111453638 PE=4 SV=1)

HSP 1 Score: 677.9 bits (1748), Expect = 2.2e-191
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPPTRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKV+QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNNVEPEPKGKSVPRRDA PKPAQPAPM SSYTPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPM-SSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. ExPASy TrEMBL
Match: A0A0A0KHV9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 9.5e-179
Identity = 322/346 (93.06%), Postives = 329/346 (95.09%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQ   E KEASPSTPQFVVVEGDD+G DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNN EPEPKGKSVPRRDALPKP Q AP +SS TPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAP-TSSLTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 ENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. ExPASy TrEMBL
Match: A0A5A7SIU9 (Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00130 PE=4 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 1.2e-178
Identity = 322/346 (93.06%), Postives = 329/346 (95.09%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQ   E K ASPSTPQFVVVEGDD+G DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNN EPEPKGKSVPRRDA PKP Q AP +SS TPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAP-TSSLTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 ENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. ExPASy TrEMBL
Match: A0A1S3B2G2 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo OX=3656 GN=LOC103485244 PE=4 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 1.2e-178
Identity = 322/346 (93.06%), Postives = 329/346 (95.09%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQ   E K ASPSTPQFVVVEGDD+G DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNN EPEPKGKSVPRRDA PKP Q AP +SS TPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAP-TSSLTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 ENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. NCBI nr
Match: XP_022977926.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxima])

HSP 1 Score: 688.7 bits (1776), Expect = 2.5e-194
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 346

[Close]

BLAST of CmaCh03G010700 vs. NCBI nr
Match: XP_022950583.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata] >KAG7034423.1 putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 677.9 bits (1748), Expect = 4.5e-191
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPPTRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKV+QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNNVEPEPKGKSVPRRDA PKPAQPAPM SSYTPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPM-SSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. NCBI nr
Match: KAG6604266.1 (putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 677.2 bits (1746), Expect = 7.6e-191
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTIL+TAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC
Sbjct: 1   MVRLDLDDFRTILETAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKV+QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNNVEPEPKGKSVPRRDA PKPAQPAPM SSYTPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPM-SSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. NCBI nr
Match: XP_023544969.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 675.6 bits (1742), Expect = 2.2e-190
Identity = 342/346 (98.84%), Postives = 342/346 (98.84%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLIAD DSPQQKV QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADSDSPQQKVPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNNVEPEPKGKSVPRRDA PKPAQPAPM SSYTPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPM-SSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. NCBI nr
Match: XP_038882890.1 (probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hispida])

HSP 1 Score: 642.5 bits (1656), Expect = 2.1e-180
Identity = 324/346 (93.64%), Postives = 333/346 (96.24%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQSP E K ASPSTPQFV V+GDD+GVDP+GGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQSPGEVKGASPSTPQFVAVDGDDDGVDPHGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPED LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDGLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNN EPEPKGKSVPRRDA PKPAQPAP +SS TPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAP-TSSLTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 347
           ENYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 ENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CmaCh03G010700 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 342.0 bits (876), Expect = 5.4e-94
Identity = 210/363 (57.85%), Postives = 248/363 (68.32%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS   +CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-----------TDRYNDGR--SNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGG 123
           D             R N+GR      E  +  V A        + V VE DD+  DP+ G
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVE-DDDDFDPFAG 120

Query: 124 LFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
           LFDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH S
Sbjct: 121 LFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPS 180

Query: 184 NDVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLIADGDSPQQKVSQNG-YHQVPDFAY 243
           N+VRRL K LV+KWKE VDEWV+ NQPG+ +  +LIAD DSP QK   NG   QVPDF Y
Sbjct: 181 NNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGY 240

Query: 244 SPNPHNGGSGSDRNN--VEPEPKGKSV---PRRDALPKPAQPAPMSSSYTPQNRQKEQQK 303
           SP P NG S S +N+   EPE K + V   PRR++ P PA+P+  S S     R KE  K
Sbjct: 241 SPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRES-PSPAKPSRPSPSQQTIPRDKE-HK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQG 347
           E +FD     +ARKRLQ+NY++AENAKKQRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]

BLAST of CmaCh03G010700 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-15
Identity = 116/431 (26.91%), Postives = 175/431 (40.60%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++      RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  -----------TDRYNDGRSNG-------CEIKQSPVEAKEASPSTPQFVVVEG----DD 125
                       +R   G   G        E+     E+K  S       +V      + 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGVDPYGGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRH 185
           E +      F    K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ 
Sbjct: 127 EALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKA 186

Query: 186 VNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQP----------------GEQTATLI 245
           VN LRKHSS+ +R+L K L+ +WKE+VD+WV   +                  E+ A   
Sbjct: 187 VNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAFPS 246

Query: 246 ADGDSPQQKVSQNGY---HQVPDFAYSPNP-----HNGGSGSDR---NNVEPEPKGKSVP 305
              D        NG+   H      +  NP     HN     +R   N  + +P+G  + 
Sbjct: 247 LPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEGTQMR 306

Query: 306 RRDALPKPAQPA----------PMSSS-------------------------YTPQNRQ- 347
            +DA  +  +P+          P+  S                          T Q R+ 
Sbjct: 307 IQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRKA 366

[Close]

BLAST of CmaCh03G010700 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 7.3e-14
Identity = 60/206 (29.13%), Postives = 101/206 (49.03%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L++       C+  
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFS-------CK-- 67

Query: 64  DTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQ-----KK 123
                   R  GC+  +  +   EA+    + V V G  +  D      + E+      +
Sbjct: 68  ------VSRCIGCDHLELSIAGDEAA---VEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKEIVDEWVRLNQPGEQTAT 204
           K L  +WK +VD+W  +N P E   T
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGT 193

[Close]

BLAST of CmaCh03G010700 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-13
Identity = 103/396 (26.01%), Postives = 166/396 (41.92%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L++       C+  
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFS-------CK-- 67

Query: 64  DTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQ-----KK 123
                   R  GC+  +  +   EA+    + V V G  +  D      + E+      +
Sbjct: 68  ------VSRCIGCDHLELSIAGDEAA---VEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVS----QNGYHQVPD--FAYSPN 243
           K L  +WK +VD+W  +N P E   T   +G      +S    +  +   P     Y+P 
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGT---EGTPESLNLSVIDEEEAFPSPPHDLDIYAPE 247

Query: 244 PHN----------GGSGSDRNNVEPEPKGKSVPRRDALPKPAQPA--------------- 303
           P+              G+ R++VE + + KS       PK    A               
Sbjct: 248 PNGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRRE 307

Query: 304 -----PMSSSYTPQNRQKEQQKEA---------------NFDSQKLAS------------ 326
                PM  S T     K Q K++                   +KLA             
Sbjct: 308 EADVRPMKHSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPD 367

The following BLAST results are available for this feature:

BLAST of CmaCh03G010700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFC7	7.6e-93	57.85	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q9FHK9	1.9e-14	26.91	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	3.0e-12	26.01	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
Q96MN5	2.7e-05	38.24	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]
B0UYI1	1.0e-04	36.23	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]

BLAST of CmaCh03G010700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILB4	1.2e-194	100.00	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita ma...	[more]
A0A6J1GFA3	2.2e-191	98.84	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita mo...	[more]
A0A0A0KHV9	9.5e-179	93.06	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4...	[more]
A0A5A7SIU9	1.2e-178	93.06	Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A1S3B2G2	1.2e-178	93.06	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]

BLAST of CmaCh03G010700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977926.1	2.5e-194	100.00	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxi...	[more]
XP_022950583.1	4.5e-191	98.84	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita mosc...	[more]
KAG6604266.1	7.6e-191	98.84	putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucur...	[more]
XP_023544969.1	2.2e-190	98.84	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo...	[more]
XP_038882890.1	2.1e-180	93.64	probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hisp...	[more]

BLAST of CmaCh03G010700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09850.1	5.4e-94	57.85	Transcription elongation factor (TFIIS) family protein	[more]
AT5G05140.1	1.3e-15	26.91	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	7.3e-14	29.13	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	2.1e-13	26.01	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 289..316
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..320
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..346
None	No IPR available	PANTHER	PTHR47210:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..346
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 116..189 e-value: 2.27901E-19 score: 79.2746
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 119..190 e-value: 1.7E-9 score: 47.6
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 113..202 e-value: 1.7E-23 score: 84.2
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 117..198
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 139..188 e-value: 7.1E-13 score: 48.4
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 114..191 score: 25.527599
IPR044790	Mediator of RNA polymerase II transcription subunit 26c-like	PANTHER	PTHR47210	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G010700.1	CmaCh03G010700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus