CmaCh03G007510 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G007510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	AP complex subunit sigma
Location	Cma_Chr03: 5929846 .. 5931616 (-)
RNA-Seq Expression	CmaCh03G007510
Synteny	CmaCh03G007510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGGTCCCTTTTTTTTTTTTTTTTTGTAATTTTTGAGGCACTTCTATTAAATGCCTGACCTGTCTGATGATGAATTCTTGAATTCAGCCTGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGGTTGGCATTTCTGTATTTCAATTAGATTTTTGCAAATTACGAAAAACGATCCACTCTCGCCACTATTTATTTATTTAACCTATATTTTGATTCTGATTTCTTTTGTTTTCTGGTTTGGTACAGTACTTTGCAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCTGAGTCCATCTTCGGTCCGGTAATTTTTCGTTGATCGCATGATTCCTTGTAACAATTTCCTTTCTAGTACCATATGTAGGATGTATTGCATTGATGATTCTTGGAGAAGCTAGATATTTGTCAAAAATTAATGTTGATTGGTCTTGTTCAACTGATAGCAGCGTAAAGAGCGGCCGGGTGATCAGTGCCAGATGAATTTAGTTTTATGTGCCTTTATTTGTACTGGAATTGCTTTAACTTTGTCTTCAAATGACCCGTTGGGATTGGCTTATTCTTTCTGCTGCAGGACTCTCGTGTTGTATACAAACACTTCGCAACCCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGGTACTTCCAATATTATATGTGATGGATTAGTGACCACTGGATCAACTTTGATATAAATATTATTTACATTCTTCCAGGCATCAATGAGGACTTCTATACAACTCGGTCCCTCAAGTTTTAAATTGGATATTATCTTGTTATGTTTTGACATTCTTTAGTATGTAAGTAACAGAAGTGGTGAGAAGTAATAAGTACAAAAAATGGTGAAGAGGTTGGGCTTAGAATTCTCTCACTGAAGAGGCCAGAGTAATTGCATAACTCGATGTGAATTGAACCAACTATAATGTTAAATCATCAAAACTTATCACTAAGTGATATGCGCCTTTAAAGTGGAATACACATGATCGAACCAATCAGTCATATTTGAATGCATTTGAATGTAGATCTTCAGAAGTTTGTTGTGATATACGTAGTGCAGTGATATGATTAGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCAACTACACCAAGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTAATGCAACACATAAATGTAGATGTGGGAACGCACGCAGTGCCACATAGAATAGGAAACAAGTGGTGTCTGTTGTTTGTTTCTCAAGTTTGTTTTTTGAAATTGCCAAGTGCACTCAGTTCATGACATAACATTGTTTGGTTGGAAGTACTGCATGACAATCAAGGCATTCTTCTGAACATTTAAATTGGAAATAATATGAATAAAACTTTTCATGCAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTGCTCTCTCTCTCTCTCTTGCATCCATAAAACTGTCGATTGCTTTATTTGCTCGAGTATTAATACTGTTGATGTCGTTGTATTGGCATTGCAGGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGAGTTTGCTGTTTTAA

mRNA sequence

ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCTGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGTACTTTGCAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCTGAGTCCATCTTCGGTCCGGACTCTCGTGTTGTATACAAACACTTCGCAACCCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGGTACTTCCAATATTATATGTGATGGATTATATGTAAGTAACAGAAGTGGTGAGAATGATATGATTAGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCAACTACACCAAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTGCTCTCTCTCTCTCTCTTGCATCCATAAAACTGTCGATTGCTTTATTTGCTCGAGTATTAATACTGTTGATGTCGTTGTATTGGCATTGCAGGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGAGTTTGCTGTTTTAA

Coding sequence (CDS)

ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCTGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGTACTTTGCAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCTGAGTCCATCTTCGGTCCGGACTCTCGTGTTGTATACAAACACTTCGCAACCCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGGTACTTCCAATATTATATGTGATGGATTATATGTAAGTAACAGAAGTGGTGAGAATGATATGATTAGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCAACTACACCAAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTGCTCTCTCTCTCTCTCTTGCATCCATAAAACTGTCGATTGCTTTATTTGCTCGAGTATTAATACTGTTGATGTCGTTGTATTGGCATTGCAGGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGAGTTTGCTGTTTTAA

Protein sequence

MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDSRVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFVETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKCSLSLSCIHKTVDCFICSSINTVDVVVLALQVRNSLEFYQLCLQNSFWLAGLSLLF

Homology

[Close]

BLAST of CmaCh03G007510 vs. ExPASy Swiss-Prot
Match: Q8VZ37 (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.8e-59
Identity = 123/187 (65.78%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR AKFYD+ PVEKQQELIR V  VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKH+ATLYFV VF+ SENELAMLDLIQ                           V V
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQ---------------------------VLV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCF NVCELD+VFNY+KMH++LDEI+ GGQVLETSSAEV+KAVEEISK    S S+
Sbjct: 121 ETLDKCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSI 160

Query: 181 SCIHKTV 185
           S + K+V
Sbjct: 181 SLVPKSV 160

[Close]

BLAST of CmaCh03G007510 vs. ExPASy Swiss-Prot
Match: Q1JQA3 (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-34
Identity = 75/169 (44.38%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R    ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVF 120
            +++Y+H+ATLYFVF  +SSE+EL +LDLIQ                           VF
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQ---------------------------VF 120

Query: 121 VETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVE 169
           VETLDKCF+NVCELDL+F+  K+H IL E++ GG VLET+  E+V  +E
Sbjct: 121 VETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIE 142

[Close]

BLAST of CmaCh03G007510 vs. ExPASy Swiss-Prot
Match: P59780 (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-34
Identity = 75/169 (44.38%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R    ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVF 120
            +++Y+H+ATLYFVF  +SSE+EL +LDLIQ                           VF
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQ---------------------------VF 120

Query: 121 VETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVE 169
           VETLDKCF+NVCELDL+F+  K+H IL E++ GG VLET+  E+V  +E
Sbjct: 121 VETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIE 142

[Close]

BLAST of CmaCh03G007510 vs. ExPASy Swiss-Prot
Match: Q8BSZ2 (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-34
Identity = 75/169 (44.38%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R    ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVF 120
            +++Y+H+ATLYFVF  +SSE+EL +LDLIQ                           VF
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQ---------------------------VF 120

Query: 121 VETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVE 169
           VETLDKCF+NVCELDL+F+  K+H IL E++ GG VLET+  E+V  +E
Sbjct: 121 VETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIE 142

[Close]

BLAST of CmaCh03G007510 vs. ExPASy Swiss-Prot
Match: Q5RDP9 (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-34
Identity = 75/169 (44.38%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R    ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVF 120
            +++Y+H+ATLYFVF  +SSE+EL +LDLIQ                           VF
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQ---------------------------VF 120

Query: 121 VETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVE 169
           VETLDKCF+NVCELDL+F+  K+H IL E++ GG VLET+  E+V  +E
Sbjct: 121 VETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIE 142

[Close]

BLAST of CmaCh03G007510 vs. ExPASy TrEMBL
Match: A0A6J1IUE1 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.8e-69
Identity = 150/187 (80.21%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           RVVYKHFATLYFVFVFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. ExPASy TrEMBL
Match: A0A6J1GFL2 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 3.4e-68
Identity = 147/187 (78.61%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAEN+SNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFVFVFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVF+YTKMHSILDEIISGGQVLETSSAEVVKAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFHYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. ExPASy TrEMBL
Match: A0A1S3BT37 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.0e-64
Identity = 139/187 (74.33%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRFAKFYDFQP+EKQQELIRSV+GVLCSRAEN+SNFVEAESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFV VFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVFNY+KMHSILDEIISGGQVLETSS+EV+KAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFNYSKMHSILDEIISGGQVLETSSSEVMKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. ExPASy TrEMBL
Match: A0A6J1E2P6 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111025475 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.3e-63
Identity = 138/187 (73.80%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQ+LIRSV+GVL SRAENVSNFVEAESIFG DS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQDLIRSVYGVLSSRAENVSNFVEAESIFGXDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFVFVFN SENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVFVFNGSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKC---SLSL 180
           ETLDKCFKNVCELDLV+NY+KMH+ILDEIISGGQVLETSS+EV+KAVEEISK    S ++
Sbjct: 121 ETLDKCFKNVCELDLVYNYSKMHTILDEIISGGQVLETSSSEVMKAVEEISKLETNSNAI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. ExPASy TrEMBL
Match: V4SEC0 (AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10026648mg PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.7e-62
Identity = 130/178 (73.03%), Postives = 144/178 (80.90%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MI++V+VMNTQGKPR AKFYDFQPVEKQQELIRSV GVLC RA+NVSNFVEA+SIFGP +
Sbjct: 1   MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGT 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFVFVF+SSENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVFVFDSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKCSLSLS 179
           ETLDKCFKNVCELD+V+NY+K+H+ILDEII GGQVLETSS EV+KAVEEISKCS SLS
Sbjct: 121 ETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPSLS 151

[Close]

BLAST of CmaCh03G007510 vs. NCBI nr
Match: XP_022978569.1 (AP-3 complex subunit sigma-like [Cucurbita maxima])

HSP 1 Score: 272.3 bits (695), Expect = 3.7e-69
Identity = 150/187 (80.21%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           RVVYKHFATLYFVFVFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. NCBI nr
Match: KAG6603975.1 (AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034147.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 8.3e-69
Identity = 149/187 (79.68%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFVFVFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. NCBI nr
Match: XP_022950395.1 (AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 268.1 bits (684), Expect = 7.0e-68
Identity = 147/187 (78.61%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAEN+SNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFVFVFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVF+YTKMHSILDEIISGGQVLETSSAEVVKAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFHYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. NCBI nr
Match: XP_023543862.1 (AP-3 complex subunit sigma [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-65
Identity = 145/187 (77.54%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAK + F PVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKXFFFLPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFVFVFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. NCBI nr
Match: XP_038893159.1 (AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893162.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893163.1 AP-3 complex subunit sigma [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.6e-64
Identity = 141/187 (75.40%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFY+FQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYNFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKHFATLYFV VFNSSENELAMLDLIQ                           VFV
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQ---------------------------VFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCFKNVCELDLVFNY+KMH+ILDEIISGGQVLETSS+ V+KAVEEISK    S S+
Sbjct: 121 ETLDKCFKNVCELDLVFNYSKMHTILDEIISGGQVLETSSSGVMKAVEEISKLETASNSI 160

Query: 181 SCIHKTV 185
           + + KTV
Sbjct: 181 NFVSKTV 160

[Close]

BLAST of CmaCh03G007510 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 229.2 bits (583), Expect = 3.4e-60
Identity = 123/187 (65.78%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR AKFYD+ PVEKQQELIR V  VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           R+VYKH+ATLYFV VF+ SENELAMLDLIQ                           V V
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQ---------------------------VLV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK---CSLSL 180
           ETLDKCF NVCELD+VFNY+KMH++LDEI+ GGQVLETSSAEV+KAVEEISK    S S+
Sbjct: 121 ETLDKCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSI 160

Query: 181 SCIHKTV 185
           S + K+V
Sbjct: 181 SLVPKSV 160

[Close]

BLAST of CmaCh03G007510 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-19
Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MIR +++ N QGK R AK+Y      ++ ++   VH ++ +R    +NFVE  +      
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRT-----H 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           +V+Y+ +A L+F    + ++NELA L+                           ++ +FV
Sbjct: 61  KVIYRRYAGLFFSVCVDITDNELAYLE---------------------------SIHLFV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK 173
           E LD  F NVCELDLVFN+ K++ ILDE I  G++ ETS   +++ + E+ K
Sbjct: 121 EILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMSELEK 140

[Close]

BLAST of CmaCh03G007510 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-18
Identity = 52/167 (31.14%), Postives = 89/167 (53.29%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NF+E         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGY----- 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           +VVYK +A+LYF    + ++NEL +L++I                             +V
Sbjct: 61  KVVYKRYASLYFCMCIDEADNELEVLEIIHH---------------------------YV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAV 168
           E LD+ F +VCELDL+FN+ K + ILDE++  G++ E+S   V + +
Sbjct: 121 EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

[Close]

BLAST of CmaCh03G007510 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-18
Identity = 53/167 (31.74%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NFVE         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY----- 60

Query: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFV 120
           +VVYK +A+LYF    +  +NEL +L++I                             +V
Sbjct: 61  KVVYKRYASLYFCMCIDQEDNELEVLEIIHH---------------------------YV 120

Query: 121 ETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAV 168
           E LD+ F +VCELDL+FN+ K + ILDE++  G++ E+S   V + +
Sbjct: 121 EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

[Close]

BLAST of CmaCh03G007510 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-17
Identity = 49/171 (28.65%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 2   IRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDSR 61
           IR ++++N QG+ R A++Y++  +E+++ L   +     +R +   +FVE  +      +
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNY-----K 62

Query: 62  VVYKHFATLYFVFVFNSSENELAMLDLIQGTSNIICDGLYVSNRSGENDMISPTLSVFVE 121
           +VY+ +A+L+F+   +  ENELA+L+ I                            + VE
Sbjct: 63  IVYRRYASLFFMVGVDDDENELAILEFIH---------------------------LLVE 122

Query: 122 TLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISK 173
           T+DK F NVCELD++F+  K H +L+E++  G ++ETS A ++  ++ + K
Sbjct: 123 TMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMDK 141

The following BLAST results are available for this feature:

BLAST of CmaCh03G007510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ37	4.8e-59	65.78	AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=...	[more]
Q1JQA3	6.9e-34	44.38	AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1	[more]
P59780	6.9e-34	44.38	AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1	[more]
Q8BSZ2	6.9e-34	44.38	AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1	[more]
Q5RDP9	6.9e-34	44.38	AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1	[more]

BLAST of CmaCh03G007510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IUE1	1.8e-69	80.21	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1	[more]
A0A6J1GFL2	3.4e-68	78.61	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1	[more]
A0A1S3BT37	1.0e-64	74.33	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1	[more]
A0A6J1E2P6	3.3e-63	73.80	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111025475 PE=3 SV=...	[more]
V4SEC0	3.7e-62	73.03	AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10026648mg PE=3...	[more]

BLAST of CmaCh03G007510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978569.1	3.7e-69	80.21	AP-3 complex subunit sigma-like [Cucurbita maxima]	[more]
KAG6603975.1	8.3e-69	79.68	AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022950395.1	7.0e-68	78.61	AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata]	[more]
XP_023543862.1	1.1e-65	77.54	AP-3 complex subunit sigma [Cucurbita pepo subsp. pepo]	[more]
XP_038893159.1	1.6e-64	75.40	AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subu...	[more]

BLAST of CmaCh03G007510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50860.1	3.4e-60	65.78	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.3e-19	32.56	SNARE-like superfamily protein	[more]
AT2G17380.1	1.1e-18	31.14	associated protein 19	[more]
AT4G35410.2	1.1e-18	31.74	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	1.6e-17	28.65	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 1..184 e-value: 3.1E-55 score: 188.3
None	No IPR available	PANTHER	PTHR11753:SF42	AP COMPLEX SUBUNIT SIGMA	coord: 1..174
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..90 e-value: 1.1E-21 score: 77.2 coord: 109..171 e-value: 6.2E-21 score: 74.8
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..174
IPR000804	Clathrin adaptor complex, small chain	PROSITE	PS00989	CLAT_ADAPTOR_S	coord: 62..72
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 106..169
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G007510.1	CmaCh03G007510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006896	Golgi to vacuole transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030123	AP-3 adaptor complex
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030117	membrane coat