CmaCh03G006360 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G006360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 5463315 .. 5467497 (-)
RNA-Seq Expression	CmaCh03G006360
Synteny	CmaCh03G006360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGTGATGGAGCTTGCTTCTCTCAGCACTCTGATCACCGCCACCGTCACTTCGTTTTCTAATTGAAGAGGAGGAGAGGCTCCGGAGGTGTAATCCATTTGTCTGAGCGATGCGAGCGATTTCTTCAAGCTTTCATGCTTGATCTTCTTTCTCAAGCTGATATATGCAACGATGCTGTTCTCGACGCCCGAATCTTCGTATTTGCATCGCCGGATCGCCGATTGGAGCTGTCGAATGCTTTCTTTTATCACCAAAACAGCGTCTCTCGTATTGTCGCAGATATCCAGGAATCTTACAGAGCCATCGACCAATTCCTGTACCCAAATTTCACGTCGGTGTGAGACTAGGGCTTGTTGGACCAGTGGGAGGTTCAGAACCTCGTTTATGCATCTGTAGAGCTCCACCAGGCCGGAGAGAGCGCTGCAATTCGCTTCAATGCTTGAGAAGGAAGAAGAATCCAAGGATCGAAGCTTGGCTAGCTCTTGCTCAACCCGAATCGTGGATGGATGCGATCGAGCAGGTAAGCTTATACATCTATCTCTATACCGACTCCAAGGTGTTTGTGAAAATGCAACCATGGCTATTCTGTTGTAATTCTGAATGAGGGTCTAATGAGGGCAACTAGTAGATGAAATCCACAATTTCCCATCATAGCTTTATATAGGCAGAGTGGATAGAAAAAGGGGAAGTTGTTTAGGATTTGAATGTACCGAATTGAGCATGTGAAGGCGGCCAAAGATTCATCAATGGCGTGGGTTATGAAGTCACATCTTTTGCCGGCTAAAAAGTAATATTAAATTGGCATCCTTCAGTCTCCATATTTAATGGAACTTGATTTTGTTTTCATCTGCTTGCGGGGGAAGTGACTTGTTATCCCTTATTAACATCCCCCATATCTCCACCGCCACACCGCCAATTCACTCTTTTCCATGGTTGAGAGTTGAAGGTACAATAGCGTTGGAAATCGATAGCCATTAAACTAAACCTGGTAGTAAGAGTCAGCCATTAAACTAAACCAAACCATTAGAAGTCTAACGTCATCCCTAGTTGATATTATTCATTTTGGTCTATTATATTATCGTTAGTCTTACGATTGTAAAATGCGTCTACTAGGGAGAGTTTTCACACCCTTATAAGGAGTTGTTTGTTCCCTTCTCCATCCAACTGATGTAGGATCTCACAATCCACCTCCTTAGGACCAAGCGTCCTCAATGACATACTGCCCGATGTCTAGCTCTGATACCATTTGTAATAGTTCAACCCCACTGCTAGCGAATATTGTCCGTTTGCCCCTTACGTATTGTCATTAGCCTCACGGTTTTAAAATGCGCAACTAAGAAGAGGATTTCACACTCTTATAAGGAATGTTTTGTTCCCTTCTCTAACTGACGTGGGACTTCACACAAATCATCCTCATGGACATTAGACCTGATTTCGTTTTACAATAGCAGTCTTTTTCCTCCTCCTATTGTTTTACACCTTTTATAGAAGAACTTTTAGGCTGTTTCAGGGGAGGTTGATGTAAAGTTGACCTTGAAATGGCTCTCAAACTTCTAGAAATTATTAGGCAACTGGTTTTCCCCGGGATGTTGATGGAATCTGAGGTCTTGTAAATTGTTTTAGGGGTAGATTTTGGTGGTGAAAAGGATTAAGGTTTCAAATCTTGGCAAGGATTGAGAGGGATTGGGAGTGGAGCCCAGATGAGATGGCTTGGCTGGGTTCGTAGAGGAGTAGAAACATGAGTTATCAATCAAATCCTCTGGGAAATGGCAGCTGGTGATGAGAGACAACTTATCATGCAAATGATTGGAGATAAGAGCATTTGGTGGGTAGTCATGGGAGGGCTTTACTATTGCGTTATTTCAACTAGTGGTTGAATATTGGAAATGTCTATCAGATTAGATAGAAAACTAGGGGTGGATACCAATTTAGTGCCTTTTTAGCCACACCATTCGTGTTTGCTATGAACTTTATCACATGTCTTGTCGAAACTCTTGAGTAAACCATATTAGTTACTTTTCCTATTCAACAGTTTTATAGGCTGCATTTTGTGCAAACATGTGAGAAGCTGCTTCATTAAGACTCCGCTAACTTTTTTCCACTAAGATTCTAACTCATCCCTTCCACTTTAATTTCTTTTCCATTAGGATTTAGGACTCCATTGATTACGCAAATACAATCTTGTGGGAAGCTGCTTTAATGGAGTTTTCTTTTTCGGGGGATGCATTAGTGAAACTACTGTTCAGAATAGAAGTGGATAAAGAGTGTTGAAAAGAAAGAATTTTTCACAAACATTTTGGCAGGTGGTTTAACAGTCCTCACCCACAACCCTTATTCTTATTCTTAGTGGGTCAGTGTCCTCACTAACACACCGCTCGATGTTTGATTTTGATACCATTTGTAATAGTCAAGCACACCGCTAGTAAATATTGTTCTATATGAGTCTTTACTTTCGAATTTTCCCTCAAAATTTTTAAAATGCGTCTACTAGAGAAATATTTCTACCCTGTTATAGGAAAAACTTCTACTAACTGACGTGGGATCGATTGCAGCGAAGAGGTTCTAACTGACGTGGGATCGATTGCATTGAAGAGGGCACTTGGCTTGAGGAATCAGGTTGGGTTGGTTAAGTTACAAGGTCCATTCAAATTGTTTGCCATGGGGACGTTAAAAGCCTACTGGCAGATTGAGTTAGATGGCTGACTGGGCTTGGAAGCTCTAAGTCAAAAGGTTTCATCAACCAACCCTCCACTCTTCACTTGATTATTGGAGCAGTTGGAAGAGTAGTTTGGTCAAAATCTATGGTAATGTGAGTGAAAATGAAATCAAGGTGGAGATGCGAACATATTCCCCTGAACTTCATCTTTTAGAATATGTACAGATTTCTTGGGTAATCTTAGATAGAATGAAGTATAGAATTTCCTTATAGATTCAACAAGTTTCAACTTTTTAGACTTAGATGTGAATTAATATGATATTATGGTGTACTCTGTTCATCCCTATCTTTTGAACCTTTTTCAGATGGTGATTGAATAAGAACACATAAATGGAAGTGATCGAACAAGCAAGAGATTTTATCATTATCAATGACTAAACTGTTATTCTTGTTTGGATCAAGAACACATAGAACACTATCGTATTATGGACATGGAATTCGAGCTAAATATCCCTATGGCGGATCCCTAAAAGTTGGATGCCTTTGCAGGATTCAGGGTGTCAAAAAATGGCTATGGAAATACAATACATCTCCTATTGAGATATTATGTTCAACAAAGAGGCTCTTGTTTTGATCAATCTCCTGAACACACCATCCAACCCACTCTCAATTTCTTGTGCCGCCATTTCCAAACTCTCCAATCTTCTCTGAGCAATCTGCAACTTCTCAACCTCCATTTCTGCAACAACAGAGCTCAAAGCCACATCCACGTTCTCAAATTCGTTCATGGCACTGTTTGACTCGCAGGCAATCGCCCCCTTGTGCACCCACTTGGTAACCAAAGACCATCCTCGAGCTTTTGGCTTCGTCAATGGTGTTAAGTACAACAACACGGATTCGAAAATGGAGCTGTTGGTTGAGCAAGCTTGTCTCAGCGCTTCAACCACAGAGCTCAGGTGATTATCTGGATTTTGCATTGTGGATGAGTTGAATTTCTCATTCATCTTCTTCATTGATGTTATCAAGTTTTTACCTTCTTTCTTCATCTTTTTTCTATAGGAAATGTAAGCAGCAGTGGTGGTTTTCATGGCGGAATCGCCTTTCCTCCGGCGAAAAGCAGAGTGAAGAGCCCCAACATGCTGTTGGGTTTCTAATGCTATGTCCTTTGCTAAGCTGCAGACATCCAAAAGCTTCATAGAATCATCCAACAACTCGTCCACCAACTGTTTGTTTTCGGGACAAGACAAAACCTGCTGGGTGGAACCCATTTTGAGAAGCTCATCAATGGAGTCATACAAATCCTGTAATCCCAAAAGAGCACCACAAACAGAAGAAGAAGAAGAAGACACCCATGTCTTCACCTTCCTCAACTCCTCCTCAACCTTCACAGCACAGGGATGCAATCTAGAAGGCAAGCTTATGGACCTCGCTTGGTACTTGGCAGCCATTATCAACAACCTTCCTTTTCTTTTTTTTCTCAACAGAGCTAAAGTTGAAACACCCTTAGCTTACTACTTCTAA

mRNA sequence

ATGGAGGAGGTGATGGAGCTTGCTTCTCTCAGCACTCTGATCACCGCCACCAGGAGGAGAGGCTCCGGAGGTGTAATCCATTTGTCTGAGCGATGCGAGCGATTTCTTCAAGCTTTCATGCTTGATCTTCTTTCTCAAGCTGATATATGCAACGATGCTGTTCTCGACGCCCGAATCTTCGTATTTGCATCGCCGGATCGCCGATTGGAGCTGTCGAATGCTTTCTTTTATCACCAAAACAGCGTCTCTCGTATTGTCGCAGATATCCAGGAATCTTACAGAGCCATCGACCAATTCCTGTACCCAAATTTCACGTCGAGCTCCACCAGGCCGGAGAGAGCGCTGCAATTCGCTTCAATGCTTGAGAAGGAAGAAGAATCCAAGGATCGAAGCTTGGCTAGCTCTTGCTCAACCCGAATCGTGGATGGATGCGATCGAGCAGGATTCAGGGTGTCAAAAAATGGCTATGGAAATACAATACATCTCCTATTGAGATATTATGTTCAACAAAGAGGCTCTTGTTTTGATCAATCTCCTGAACACACCATCCAACCCACTCTCAATTTCTTGTGCCGCCATTTCCAAACTCTCCAATCTTCTCTGAGCAATCTGCAACTTCTCAACCTCCATTTCTGCAACAACAGAGCTCAAAGCCACATCCACGTTCTCAAATTCGTTCATGGCACTGCAATCGCCCCCTTGTGCACCCACTTGGTAACCAAAGACCATCCTCGAGCTTTTGGCTTCGTCAATGGTGTTAAGTACAACAACACGGATTCGAAAATGGAGCTGTTGGTTGAGCAAGCTTGTCTCAGCGCTTCAACCACAGAGCTCAGGAAATGTAAGCAGCAGTGGTGGTTTTCATGGCGGAATCGCCTTTCCTCCGGCGAAAAGCAGAGTGAAGAGCCCCAACATGCTACATCCAAAAGCTTCATAGAATCATCCAACAACTCGTCCACCAACTGTTTGTTTTCGGGACAAGACAAAACCTGCTGGGTGGAACCCATTTTGAGAAGCTCATCAATGGAGTCATACAAATCCTGTAATCCCAAAAGAGCACCACAAACAGAAGAAGAAGAAGAAGACACCCATGTCTTCACCTTCCTCAACTCCTCCTCAACCTTCACAGCACAGGGATGCAATCTAGAAGGCAAGCTTATGGACCTCGCTTGGTACTTGGCAGCCATTATCAACAACCTTCCTTTTCTTTTTTTTCTCAACAGAGCTAAAGTTGAAACACCCTTAGCTTACTACTTCTAA

Coding sequence (CDS)

ATGGAGGAGGTGATGGAGCTTGCTTCTCTCAGCACTCTGATCACCGCCACCAGGAGGAGAGGCTCCGGAGGTGTAATCCATTTGTCTGAGCGATGCGAGCGATTTCTTCAAGCTTTCATGCTTGATCTTCTTTCTCAAGCTGATATATGCAACGATGCTGTTCTCGACGCCCGAATCTTCGTATTTGCATCGCCGGATCGCCGATTGGAGCTGTCGAATGCTTTCTTTTATCACCAAAACAGCGTCTCTCGTATTGTCGCAGATATCCAGGAATCTTACAGAGCCATCGACCAATTCCTGTACCCAAATTTCACGTCGAGCTCCACCAGGCCGGAGAGAGCGCTGCAATTCGCTTCAATGCTTGAGAAGGAAGAAGAATCCAAGGATCGAAGCTTGGCTAGCTCTTGCTCAACCCGAATCGTGGATGGATGCGATCGAGCAGGATTCAGGGTGTCAAAAAATGGCTATGGAAATACAATACATCTCCTATTGAGATATTATGTTCAACAAAGAGGCTCTTGTTTTGATCAATCTCCTGAACACACCATCCAACCCACTCTCAATTTCTTGTGCCGCCATTTCCAAACTCTCCAATCTTCTCTGAGCAATCTGCAACTTCTCAACCTCCATTTCTGCAACAACAGAGCTCAAAGCCACATCCACGTTCTCAAATTCGTTCATGGCACTGCAATCGCCCCCTTGTGCACCCACTTGGTAACCAAAGACCATCCTCGAGCTTTTGGCTTCGTCAATGGTGTTAAGTACAACAACACGGATTCGAAAATGGAGCTGTTGGTTGAGCAAGCTTGTCTCAGCGCTTCAACCACAGAGCTCAGGAAATGTAAGCAGCAGTGGTGGTTTTCATGGCGGAATCGCCTTTCCTCCGGCGAAAAGCAGAGTGAAGAGCCCCAACATGCTACATCCAAAAGCTTCATAGAATCATCCAACAACTCGTCCACCAACTGTTTGTTTTCGGGACAAGACAAAACCTGCTGGGTGGAACCCATTTTGAGAAGCTCATCAATGGAGTCATACAAATCCTGTAATCCCAAAAGAGCACCACAAACAGAAGAAGAAGAAGAAGACACCCATGTCTTCACCTTCCTCAACTCCTCCTCAACCTTCACAGCACAGGGATGCAATCTAGAAGGCAAGCTTATGGACCTCGCTTGGTACTTGGCAGCCATTATCAACAACCTTCCTTTTCTTTTTTTTCTCAACAGAGCTAAAGTTGAAACACCCTTAGCTTACTACTTCTAA

Protein sequence

MEEVMELASLSTLITATRRRGSGGVIHLSERCERFLQAFMLDLLSQADICNDAVLDARIFVFASPDRRLELSNAFFYHQNSVSRIVADIQESYRAIDQFLYPNFTSSSTRPERALQFASMLEKEEESKDRSLASSCSTRIVDGCDRAGFRVSKNGYGNTIHLLLRYYVQQRGSCFDQSPEHTIQPTLNFLCRHFQTLQSSLSNLQLLNLHFCNNRAQSHIHVLKFVHGTAIAPLCTHLVTKDHPRAFGFVNGVKYNNTDSKMELLVEQACLSASTTELRKCKQQWWFSWRNRLSSGEKQSEEPQHATSKSFIESSNNSSTNCLFSGQDKTCWVEPILRSSSMESYKSCNPKRAPQTEEEEEDTHVFTFLNSSSTFTAQGCNLEGKLMDLAWYLAAIINNLPFLFFLNRAKVETPLAYYF

Homology

[Close]

BLAST of CmaCh03G006360 vs. ExPASy TrEMBL
Match: A0A6J1ILZ7 (uncharacterized protein LOC111477676 OS=Cucurbita maxima OX=3661 GN=LOC111477676 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 230 AIAPLCTHLVTKDHPRAFGFVNGVKYNNTDSKMELLVEQACLSASTTELRKCKQQWWFSW 289
           AIAPLCTHLVTKDHPRAFGFVNGVKYNNTDSKMELLVEQACLSASTTELRKCKQQWWFSW
Sbjct: 8   AIAPLCTHLVTKDHPRAFGFVNGVKYNNTDSKMELLVEQACLSASTTELRKCKQQWWFSW 67

Query: 290 RNRLSSGEKQSEEPQHA 307
           RNRLSSGEKQSEEPQHA
Sbjct: 68  RNRLSSGEKQSEEPQHA 84

[Close]

BLAST of CmaCh03G006360 vs. ExPASy TrEMBL
Match: A0A0A0L1K1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002440 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-04
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 308 SKSFIESSNNSSTNCLFSGQDKTCWVEPILRSSSMESYKSCNPKRAPQTE---EEEEDTH 367
           SKSF+  S +SST+  F   DKTC V+ I RSSSME+YKS +P +  Q +   E +E ++
Sbjct: 55  SKSFMNPSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSN 114

Query: 368 VFTFLNSSSTFTAQGCNLEG 385
            F  L+ SS     G +LEG
Sbjct: 115 GFNLLSCSSILRVVGWDLEG 134

[Close]

BLAST of CmaCh03G006360 vs. NCBI nr
Match: XP_022977325.1 (uncharacterized protein LOC111477676 [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 2.6e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 230 AIAPLCTHLVTKDHPRAFGFVNGVKYNNTDSKMELLVEQACLSASTTELRKCKQQWWFSW 289
           AIAPLCTHLVTKDHPRAFGFVNGVKYNNTDSKMELLVEQACLSASTTELRKCKQQWWFSW
Sbjct: 8   AIAPLCTHLVTKDHPRAFGFVNGVKYNNTDSKMELLVEQACLSASTTELRKCKQQWWFSW 67

Query: 290 RNRLSSGEKQSEEPQHA 307
           RNRLSSGEKQSEEPQHA
Sbjct: 68  RNRLSSGEKQSEEPQHA 84

The following BLAST results are available for this feature:

BLAST of CmaCh03G006360 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G006360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILZ7	1.3e-36	100.00	uncharacterized protein LOC111477676 OS=Cucurbita maxima OX=3661 GN=LOC111477676...	[more]
A0A0A0L1K1	3.7e-04	45.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002440 PE=4 SV=1	[more]

BLAST of CmaCh03G006360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977325.1	2.6e-36	100.00	uncharacterized protein LOC111477676 [Cucurbita maxima]	[more]

BLAST of CmaCh03G006360 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..317

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006360.1	CmaCh03G006360.1	mRNA