CmaCh03G006340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G006340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pentatricopeptide repeat-containing protein At2g17670-like
Location	Cma_Chr03: 5455044 .. 5455493 (+)
RNA-Seq Expression	CmaCh03G006340
Synteny	CmaCh03G006340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATTGTCGCCTTCTTTTCGTTCAGCTCTCTTCACCACGGTCGTTAACCAACCGCCTCGTCCTCTGGCGGCGCCTCCGCTTTTGTCCGGCGAGTACCGCTCCTTATATGGAAAACGAACACCAAAACTTCTCCACAAAACCTCATCGAGTCAGAGCTCCGGCCACCCCGAAAAGCCTAAACTCCCGACGGTGTTCAAATCGGCTAGTCTTGCAGATGCCAAGAAGCTCTACAGCTCCTTCATCCCCACCACCACAAAACCTCATCGGATCGATCGACGTTTTATATCTTACTCTTCACCTCCGGGAATGGTACTGATTCGTCTCTCGATTCGGTTCGGCAAATTCTCAATTTCATGGTTAACAATGGCTTCAATCCTGTCAAGGTAACCACGGATATTGCTGTGCATTCGCTTTGTTCGGCAGGTTTGGTTGATGAAGCTATAG

mRNA sequence

ATGGGGAAATTGTCGCCTTCTTTTCGTTCAGCTCTCTTCACCACGGTCGTTAACCAACCGCCTCGTCCTCTGGCGGCGCCTCCGCTTTTGTCCGGCGAGTACCGCTCCTTATATGGAAAACGAACACCAAAACTTCTCCACAAAACCTCATCGAGTCAGAGCTCCGGCCACCCCGAAAAGCCTAAACTCCCGACGGTGTTCAAATCGGCTAGTCTTGCAGATGCCAAGAAGCTCTACAGCTCCTTCATCCCCACCACCACAAAACCTCATCGGATCGATCGACGTTTTATATCTTACTCTTCACCTCCGGGAATGGTTTGGTTGATGAAGCTATAG

Coding sequence (CDS)

ATGGGGAAATTGTCGCCTTCTTTTCGTTCAGCTCTCTTCACCACGGTCGTTAACCAACCGCCTCGTCCTCTGGCGGCGCCTCCGCTTTTGTCCGGCGAGTACCGCTCCTTATATGGAAAACGAACACCAAAACTTCTCCACAAAACCTCATCGAGTCAGAGCTCCGGCCACCCCGAAAAGCCTAAACTCCCGACGGTGTTCAAATCGGCTAGTCTTGCAGATGCCAAGAAGCTCTACAGCTCCTTCATCCCCACCACCACAAAACCTCATCGGATCGATCGACGTTTTATATCTTACTCTTCACCTCCGGGAATGGTTTGGTTGATGAAGCTATAG

Protein sequence

MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEKPKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRFISYSSPPGMVWLMKL

Homology

[Close]

BLAST of CmaCh03G006340 vs. ExPASy TrEMBL
Match: A0A6J1KT16 (pentatricopeptide repeat-containing protein At2g17670-like OS=Cucurbita maxima OX=3661 GN=LOC111497342 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRSA+ T +VN+PP P AAP LLSGE RSL  KR PK   +  S+QSSGH EK
Sbjct: 1  MGKLSPSFRSAISTAIVNKPPNPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSGHGEK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          PKLPT+FKSASLA+AKKLYSSFI TT  P  +D RF
Sbjct: 61 PKLPTLFKSASLAEAKKLYSSFINTTKAP--LDVRF 94

[Close]

BLAST of CmaCh03G006340 vs. ExPASy TrEMBL
Match: A0A6J1EGP9 (pentatricopeptide repeat-containing protein At2g17670 OS=Cucurbita moschata OX=3662 GN=LOC111433937 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.3e-24
Identity = 67/96 (69.79%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRSA+ T +VN+PP P AAP LLSGE RSL  KR PK   +  S+QSS H EK
Sbjct: 1  MGKLSPSFRSAISTPIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          PKLPT+FKSASLADAKKLYSSFI TT  P  +D RF
Sbjct: 61 PKLPTLFKSASLADAKKLYSSFINTTKAP--LDVRF 94

[Close]

BLAST of CmaCh03G006340 vs. ExPASy TrEMBL
Match: A0A6J1BW58 (pentatricopeptide repeat-containing protein At2g17670 OS=Momordica charantia OX=3673 GN=LOC111005895 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPL-AAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPE 60
          MGKLSPSFRSA+ TT++N+PP+PL AAPPLLSGE RSL  K  PK   K  S+QSSG  E
Sbjct: 1  MGKLSPSFRSAISTTILNKPPQPLAAAPPLLSGEPRSLSKKLPPKPSRKIQSAQSSGPLE 60

Query: 61 KPKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          KPK  T+FKS+SLADAKKLYSSFI TT  P  +D RF
Sbjct: 61 KPKTATLFKSSSLADAKKLYSSFIATTRAP--LDLRF 95

[Close]

BLAST of CmaCh03G006340 vs. ExPASy TrEMBL
Match: A0A0A0KHF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507510 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1  MGKLSPSFRSALFT-TVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPE 60
          MGKLSPSFRS L + TV+N+PP   AAPPL S        K TPK   KT S QSSGHPE
Sbjct: 1  MGKLSPSFRSILSSNTVINKPPHSPAAPPLSS-------KKATPKPSRKTPSGQSSGHPE 60

Query: 61 KPKLPTVFKSASLADAKKLYSSFIPTTTKPHRI 93
          KPKLPTVFKSASLADAKKLYSSF+  T  P  +
Sbjct: 61 KPKLPTVFKSASLADAKKLYSSFVSATKAPFNL 86

[Close]

BLAST of CmaCh03G006340 vs. ExPASy TrEMBL
Match: A0A5A7SN01 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00740 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 59/92 (64.13%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRS L T+V+++P    AAPPL S        K TPK   KT S QSSGHP K
Sbjct: 1  MGKLSPSFRSILSTSVIHKPTLSPAAPPLSS-------KKPTPKPSRKTPSGQSSGHPVK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRI 93
          PKLPTVFKSASLADAKKLYSSFI T+  P  +
Sbjct: 61 PKLPTVFKSASLADAKKLYSSFISTSKAPFNL 85

[Close]

BLAST of CmaCh03G006340 vs. NCBI nr
Match: XP_023518399.1 (pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp. pepo] >XP_023518400.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 68/96 (70.83%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRSA+ T +VN+PP P AAP LLSGE RSL  KR PK   +  S+QSSGH EK
Sbjct: 1  MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSGHGEK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          PKLPT+FKSASLADAKKLYSSFI TT  P  +D RF
Sbjct: 61 PKLPTLFKSASLADAKKLYSSFINTTKAP--LDVRF 94

[Close]

BLAST of CmaCh03G006340 vs. NCBI nr
Match: XP_023003882.1 (pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >XP_023003883.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >XP_023003884.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >XP_023003885.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-24
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRSA+ T +VN+PP P AAP LLSGE RSL  KR PK   +  S+QSSGH EK
Sbjct: 1  MGKLSPSFRSAISTAIVNKPPNPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSGHGEK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          PKLPT+FKSASLA+AKKLYSSFI TT  P  +D RF
Sbjct: 61 PKLPTLFKSASLAEAKKLYSSFINTTKAP--LDVRF 94

[Close]

BLAST of CmaCh03G006340 vs. NCBI nr
Match: KAG7026711.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24
Identity = 67/96 (69.79%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRSA+ T +VN+PP P AAP LLSGE RSL  KR PK   +  S+QSS H EK
Sbjct: 1  MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          PKLPT+FKSASLADAKKLYSSFI TT  P  +D RF
Sbjct: 61 PKLPTLFKSASLADAKKLYSSFINTTKAP--LDVRF 94

[Close]

BLAST of CmaCh03G006340 vs. NCBI nr
Match: KAG6594740.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24
Identity = 67/96 (69.79%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRSA+ T +VN+PP P AAP LLSGE RSL  KR PK   +  S+QSS H EK
Sbjct: 1  MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          PKLPT+FKSASLADAKKLYSSFI TT  P  +D RF
Sbjct: 61 PKLPTLFKSASLADAKKLYSSFINTTKAP--LDVRF 94

[Close]

BLAST of CmaCh03G006340 vs. NCBI nr
Match: XP_022926982.1 (pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_022926983.1 pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_022926984.1 pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-24
Identity = 67/96 (69.79%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MGKLSPSFRSALFTTVVNQPPRPLAAPPLLSGEYRSLYGKRTPKLLHKTSSSQSSGHPEK 60
          MGKLSPSFRSA+ T +VN+PP P AAP LLSGE RSL  KR PK   +  S+QSS H EK
Sbjct: 1  MGKLSPSFRSAISTPIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60

Query: 61 PKLPTVFKSASLADAKKLYSSFIPTTTKPHRIDRRF 97
          PKLPT+FKSASLADAKKLYSSFI TT  P  +D RF
Sbjct: 61 PKLPTLFKSASLADAKKLYSSFINTTKAP--LDVRF 94

The following BLAST results are available for this feature:

BLAST of CmaCh03G006340 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G006340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KT16	1.5e-24	69.79	pentatricopeptide repeat-containing protein At2g17670-like OS=Cucurbita maxima O...	[more]
A0A6J1EGP9	3.3e-24	69.79	pentatricopeptide repeat-containing protein At2g17670 OS=Cucurbita moschata OX=3...	[more]
A0A6J1BW58	4.0e-22	68.04	pentatricopeptide repeat-containing protein At2g17670 OS=Momordica charantia OX=...	[more]
A0A0A0KHF8	1.9e-19	65.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507510 PE=4 SV=1	[more]
A0A5A7SN01	2.1e-18	64.13	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CmaCh03G006340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518399.1	1.0e-24	70.83	pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp...	[more]
XP_023003882.1	3.0e-24	69.79	pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >X...	[more]
KAG7026711.1	5.2e-24	69.79	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG6594740.1	5.2e-24	69.79	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022926982.1	6.8e-24	69.79	pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_0...	[more]

BLAST of CmaCh03G006340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006340.1	CmaCh03G006340.1	mRNA