CmaCh03G006240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G006240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RWP-RK domain-containing protein
Location	Cma_Chr03: 5422972 .. 5424264 (+)
RNA-Seq Expression	CmaCh03G006240
Synteny	CmaCh03G006240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGAAGTTCAACCTCCAATTACCATTCCATCTCCTGAAGAACCACTTTTGGTTCATTCTTTATTCTCTGCTTGGAGTTTTCTGCTCTTTGAAAGGGCTGTCTAAGTTTTCAGAGCTTTCGTTGTTTCACAGGTAATATTTCCATCCATTTATGGAAGTTGGTTCTGGCACATGCCATGCTCTGACTCTGCTTGCTTTATCTGCTTCTCCTTTTCTGTTTGTCACTTTCTCCTCTTATTTCTGCTAACAACATCATCTGTTTCATGATTAAAGATGAGTTCTGGGTTCAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTCAGGTTTTGCTTCTTCAACTTCTTTTTACACAGATCATGTCCCTGTTATGAAAGTTGGCCAACCAGGTGGGGCATTCCCTATTATTGCAGAGAAGAAAAGGAGGGCAACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACGGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAGATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGTTATCATCCCTTTCTTTCTACTTTGCATTTGCAGCCTTGAAAGGCGCACATAGTTTGTTTATGGAAGAGGGTGCTTGTTTGTTTGTAGGAAGAAGCAAAGCGTAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGCTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAGTAAGTCACAGTCCAGTTTAGTTTGTAGCAGCCATTATATTGAACAAAATAAATGACTTGCAAAGTAGTTTGTTACTTTTTTTTAATCTCGATCTTGTCTCGAGATCAAGGTCTTTCAATGCAATATTGCATCTCATCTTGGCTCCCAATCGACATGGCCCACATGTCTTGATGTCATTTCGAGTCTAAGGATGTCATCGCCATCCGAGTTCTATCGAGGCATTGACCCTCTCGTGCCCATGTTAAGTCATTTACGAATACTGTACCAAATAGCGGGTGTATAATTCAAACTCTGACACGGGGTTGGGCCACAATATTGGCACACCCATGTCGCCCACTACTGTCCTTCAAAAACTCATTTCAAAGGAAGTCACGCTTGTCTCAGC

mRNA sequence

ATGACGAAGAAGTTCAACCTCCAATTACCATTCCATCTCCTGAAGAACCACTTTTGGTTCATTCTTTATTCTCTGCTTGGAGTTTTCTGCTCTTTGAAAGGGCTGTCTAAGTTTTCAGAGCTTTCGTTGTTTCACAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTCAGGTTTTGCTTCTTCAACTTCTTTTTACACAGATCATGTCCCTGTTATGAAAGTTGGCCAACCAGGTGGGGCATTCCCTATTATTGCAGAGAAGAAAAGGAGGGCAACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACGGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAGATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCGTAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGCTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAGTAAGTCACAGTCCAGTTTAGTTTGTAGCAGCCATTATATTGAACAAAATAAATGACTTGCAAAGTAGTTTGTTACTTTTTTTTAATCTCGATCTTGTCTCGAGATCAAGGTCTTTCAATGCAATATTGCATCTCATCTTGGCTCCCAATCGACATGGCCCACATGTCTTGATGTCATTTCGAGTCTAAGGATGTCATCGCCATCCGAGTTCTATCGAGGCATTGACCCTCTCGTGCCCATGTTAAGTCATTTACGAATACTGTACCAAATAGCGGGTGTATAATTCAAACTCTGACACGGGGTTGGGCCACAATATTGGCACACCCATGTCGCCCACTACTGTCCTTCAAAAACTCATTTCAAAGGAAGTCACGCTTGTCTCAGC

Coding sequence (CDS)

ATGACGAAGAAGTTCAACCTCCAATTACCATTCCATCTCCTGAAGAACCACTTTTGGTTCATTCTTTATTCTCTGCTTGGAGTTTTCTGCTCTTTGAAAGGGCTGTCTAAGTTTTCAGAGCTTTCGTTGTTTCACAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTCAGGTTTTGCTTCTTCAACTTCTTTTTACACAGATCATGTCCCTGTTATGAAAGTTGGCCAACCAGGTGGGGCATTCCCTATTATTGCAGAGAAGAAAAGGAGGGCAACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACGGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAGATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCGTAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGCTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAGTAAGTCACAGTCCAGTTTAG

Protein sequence

MTKKFNLQLPFHLLKNHFWFILYSLLGVFCSLKGLSKFSELSLFHSTEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSPV

Homology

[Close]

BLAST of CmaCh03G006240 vs. ExPASy Swiss-Prot
Match: O81791 (Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-34
Identity = 74/128 (57.81%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I +KK+R  S H+A ++L +L+KYFD+ I EASR+L VGLTVLK++CREFGI RWPHRKI
Sbjct: 227 ILKKKKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKI 286

Query: 151 KSIDGLIRDLQEEA-KRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQD 210
           KS+D LI DLQ EA K++E+++ A MAV K+Q  L+ E+ +I + PF E+  ETK+FRQ+
Sbjct: 287 KSLDCLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQE 346

Query: 211 VFKRRHKA 218
            FK+RH+A
Sbjct: 347 NFKKRHRA 354

[Close]

BLAST of CmaCh03G006240 vs. ExPASy Swiss-Prot
Match: Q9M9U9 (Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.2e-19
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 94  KKRRATSEHIAGIALS------DLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPH 153
           KKRR   E  +  ++S       ++ YF +PIT+A+R LN+GLT+LK+RCRE GI RWPH
Sbjct: 110 KKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPH 169

Query: 154 RKIKSIDGLIRDLQE-EAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRF 213
           RK+ S+  LI +++E E    EE++  L    ++   L+ E+++IE+ P  + E +TKR 
Sbjct: 170 RKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKLPDLKFEDKTKRL 229

Query: 214 RQDVFKRRHKAR 219
           RQ  FK  HK +
Sbjct: 230 RQACFKANHKRK 238

[Close]

BLAST of CmaCh03G006240 vs. ExPASy Swiss-Prot
Match: Q9CA66 (Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-18
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           II++     TS     ++   +++YF +PIT+A+ +LNVGLT+LKRRCRE GI RWPHRK
Sbjct: 119 IISDITTYTTSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRK 178

Query: 150 IKSIDGLIRDLQEEAKRR-EEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQ 209
           + S++ LI +++E  K   EE+ + L    +   ML+ E+ +IE  P  E + +TKR RQ
Sbjct: 179 LMSLNTLISNVKELQKMEGEENAEKLQDALE---MLEKEKRTIEDLPDLEFKDKTKRLRQ 238

Query: 210 DVFKRRHKAR 219
             FK  HK +
Sbjct: 239 ACFKANHKRK 245

[Close]

BLAST of CmaCh03G006240 vs. ExPASy Swiss-Prot
Match: Q9LVU8 (Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-18
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 58  DSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDV 117
           DS  SS  A        +V V KV           +KKR    +    + +S++ ++FD 
Sbjct: 109 DSSSSSPLAIQNDGLISNVKVEKV---------TVKKKRNLKKKRQDKLEMSEIKQFFDR 168

Query: 118 PITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAV 177
           PI +A++ LNVGLTVLK+RCRE GI+RWPHRK+KS++ LI++L+      EE+ K     
Sbjct: 169 PIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNVG--MEEEVK----- 228

Query: 178 TKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKAR 219
                 L+  R  IE+ P  EL   TK+ RQ  FK  +K R
Sbjct: 229 -----NLEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRR 248

[Close]

BLAST of CmaCh03G006240 vs. ExPASy Swiss-Prot
Match: Q9FGD1 (Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-17
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I  K+R      I  ++   + +YF +PIT+A++ LN+G+T+LK+RCRE GI RWPHRK+
Sbjct: 144 IIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKL 203

Query: 151 KSIDGLI---RDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFR 210
            S++ LI   +DL    K R    K   A+     +L+ E++ IE  P  E   +TKR R
Sbjct: 204 TSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPDLEFGDKTKRLR 263

Query: 211 QDVFKRRHKARALVSHS 225
           Q  FK ++K R L S S
Sbjct: 264 QACFKAKYKRRRLFSSS 276

[Close]

BLAST of CmaCh03G006240 vs. ExPASy TrEMBL
Match: A0A6J1II45 (protein RKD5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477673 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG 105
           STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG
Sbjct: 6   STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG 65

Query: 106 IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 165
           IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK
Sbjct: 66  IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 125

Query: 166 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 225
           RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP
Sbjct: 126 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 185

Query: 226 V 227
           V
Sbjct: 186 V 186

[Close]

BLAST of CmaCh03G006240 vs. ExPASy TrEMBL
Match: A0A6J1II50 (protein RKD5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477673 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.9e-72
Identity = 152/181 (83.98%), Postives = 152/181 (83.98%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG 105
           STEFPNVADPMHDSYLSS                             EKKRRATSEHIAG
Sbjct: 6   STEFPNVADPMHDSYLSS-----------------------------EKKRRATSEHIAG 65

Query: 106 IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 165
           IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK
Sbjct: 66  IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 125

Query: 166 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 225
           RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP
Sbjct: 126 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 157

Query: 226 V 227
           V
Sbjct: 186 V 157

[Close]

BLAST of CmaCh03G006240 vs. ExPASy TrEMBL
Match: A0A6J1GEC7 (protein RKD5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.9e-71
Identity = 153/196 (78.06%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLS---------------SGFASSTSFYTDHVPVMKVGQPGGAFPI 105
           STEFPNVADPMHDSYLS               +    S+S      P +         P+
Sbjct: 7   STEFPNVADPMHDSYLSCFPKLNDEKFLHQDLNFLPCSSSMAVSKGPEIH-QMKELCEPV 66

Query: 106 IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 165
           +A+KKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKR+CREFGIHRWPHRKI
Sbjct: 67  LAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWPHRKI 126

Query: 166 KSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 225
           KSIDGLIRDLQEEAK REEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV
Sbjct: 127 KSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 186

Query: 226 FKRRHKARALVSHSPV 227
           FKRRHKARALVSHSPV
Sbjct: 187 FKRRHKARALVSHSPV 201

[Close]

BLAST of CmaCh03G006240 vs. ExPASy TrEMBL
Match: A0A6J1GFB8 (protein RKD5-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 9.5e-71
Identity = 149/181 (82.32%), Postives = 151/181 (83.43%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG 105
           STEFPNVADPMHDSYLSS                             +KKRRATSEHIAG
Sbjct: 7   STEFPNVADPMHDSYLSS-----------------------------KKKRRATSEHIAG 66

Query: 106 IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 165
           IALSDLAKYFDVPITEASRSLNVGLTVLKR+CREFGIHRWPHRKIKSIDGLIRDLQEEAK
Sbjct: 67  IALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAK 126

Query: 166 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 225
            REEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP
Sbjct: 127 HREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 158

Query: 226 V 227
           V
Sbjct: 187 V 158

[Close]

BLAST of CmaCh03G006240 vs. ExPASy TrEMBL
Match: A0A6J1BWV1 (protein RKD5 OS=Momordica charantia OX=3673 GN=LOC111005457 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.7e-59
Identity = 121/140 (86.43%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 83  QPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGI 142
           +PGG   +IAEKK+RATSEHIAGI LSDLAKYFD+PITEASR+LNVGLTVLKR+CREFGI
Sbjct: 53  EPGGELLVIAEKKKRATSEHIAGITLSDLAKYFDLPITEASRNLNVGLTVLKRKCREFGI 112

Query: 143 HRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESE 202
           HRWPHRKIKSIDGLIRDLQEEAK REED KALMAVTKRQ MLQ+ERESIE TPFRELE+E
Sbjct: 113 HRWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQRMLQSERESIEMTPFRELETE 172

Query: 203 TKRFRQDVFKRRHKARALVS 223
           T+RFRQDVF+RRHKARAL S
Sbjct: 173 TRRFRQDVFRRRHKARALES 192

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: XP_022977317.1 (protein RKD5-like isoform X1 [Cucurbita maxima] >XP_022977318.1 protein RKD5-like isoform X1 [Cucurbita maxima] >XP_022977319.1 protein RKD5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG 105
           STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG
Sbjct: 6   STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG 65

Query: 106 IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 165
           IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK
Sbjct: 66  IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 125

Query: 166 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 225
           RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP
Sbjct: 126 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 185

Query: 226 V 227
           V
Sbjct: 186 V 186

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: KAG7034041.1 (Protein RKD5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 2.6e-75
Identity = 157/200 (78.50%), Postives = 167/200 (83.50%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLS---------------SGFASSTSFYTDHVP----VMKVGQPGG 105
           STEFPNVADPMHDSYLS               +    S+S      P    + ++ +PGG
Sbjct: 7   STEFPNVADPMHDSYLSCFPKLNDEKFLHQDLNFLPCSSSMAVSKGPEIHQMKELCEPGG 66

Query: 106 AFPIIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWP 165
            FP++A+KKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKR+CREFGIHRWP
Sbjct: 67  EFPVLAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWP 126

Query: 166 HRKIKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRF 225
           HRKIKSIDGLIRDLQEEAK REEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRF
Sbjct: 127 HRKIKSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRF 186

Query: 226 RQDVFKRRHKARALVSHSPV 227
           RQDVFKRRHKARALVSHSPV
Sbjct: 187 RQDVFKRRHKARALVSHSPV 206

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: XP_022977320.1 (protein RKD5-like isoform X2 [Cucurbita maxima] >XP_022977321.1 protein RKD5-like isoform X2 [Cucurbita maxima] >XP_022977322.1 protein RKD5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 8.0e-72
Identity = 152/181 (83.98%), Postives = 152/181 (83.98%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAG 105
           STEFPNVADPMHDSYLSS                             EKKRRATSEHIAG
Sbjct: 6   STEFPNVADPMHDSYLSS-----------------------------EKKRRATSEHIAG 65

Query: 106 IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 165
           IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK
Sbjct: 66  IALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAK 125

Query: 166 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 225
           RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP
Sbjct: 126 RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSP 157

Query: 226 V 227
           V
Sbjct: 186 V 157

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: XP_023544127.1 (protein RKD5-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 3.0e-71
Identity = 153/196 (78.06%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLS---------------SGFASSTSFYTDHVPVMKVGQPGGAFPI 105
           STEFPNVADPMHDSYLS               +    S+S      P +         P+
Sbjct: 7   STEFPNVADPMHDSYLSCFPKLNDDKFLHQDLNFLPCSSSMAVSKGPEIH-QMKEFCEPV 66

Query: 106 IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 165
           +A+KKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKR+CREFGIHRWPHRKI
Sbjct: 67  LAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWPHRKI 126

Query: 166 KSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 225
           KSIDGLIRDLQEEAK REEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV
Sbjct: 127 KSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 186

Query: 226 FKRRHKARALVSHSPV 227
           FKRRHKARALVSHSPV
Sbjct: 187 FKRRHKARALVSHSPV 201

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: XP_022950270.1 (protein RKD5-like isoform X1 [Cucurbita moschata] >XP_022950272.1 protein RKD5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 278.9 bits (712), Expect = 4.0e-71
Identity = 153/196 (78.06%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 46  STEFPNVADPMHDSYLS---------------SGFASSTSFYTDHVPVMKVGQPGGAFPI 105
           STEFPNVADPMHDSYLS               +    S+S      P +         P+
Sbjct: 7   STEFPNVADPMHDSYLSCFPKLNDEKFLHQDLNFLPCSSSMAVSKGPEIH-QMKELCEPV 66

Query: 106 IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 165
           +A+KKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKR+CREFGIHRWPHRKI
Sbjct: 67  LAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWPHRKI 126

Query: 166 KSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 225
           KSIDGLIRDLQEEAK REEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV
Sbjct: 127 KSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 186

Query: 226 FKRRHKARALVSHSPV 227
           FKRRHKARALVSHSPV
Sbjct: 187 FKRRHKARALVSHSPV 201

[Close]

BLAST of CmaCh03G006240 vs. TAIR 10
Match: AT4G35590.1 (RWP-RK domain-containing protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 74/128 (57.81%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I +KK+R  S H+A ++L +L+KYFD+ I EASR+L VGLTVLK++CREFGI RWPHRKI
Sbjct: 227 ILKKKKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKI 286

Query: 151 KSIDGLIRDLQEEA-KRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQD 210
           KS+D LI DLQ EA K++E+++ A MAV K+Q  L+ E+ +I + PF E+  ETK+FRQ+
Sbjct: 287 KSLDCLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQE 346

Query: 211 VFKRRHKA 218
            FK+RH+A
Sbjct: 347 NFKKRHRA 354

[Close]

BLAST of CmaCh03G006240 vs. TAIR 10
Match: AT1G18790.1 (RWP-RK domain-containing protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-20
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 94  KKRRATSEHIAGIALS------DLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPH 153
           KKRR   E  +  ++S       ++ YF +PIT+A+R LN+GLT+LK+RCRE GI RWPH
Sbjct: 110 KKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPH 169

Query: 154 RKIKSIDGLIRDLQE-EAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRF 213
           RK+ S+  LI +++E E    EE++  L    ++   L+ E+++IE+ P  + E +TKR 
Sbjct: 170 RKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKLPDLKFEDKTKRL 229

Query: 214 RQDVFKRRHKAR 219
           RQ  FK  HK +
Sbjct: 230 RQACFKANHKRK 238

[Close]

BLAST of CmaCh03G006240 vs. TAIR 10
Match: AT1G74480.1 (RWP-RK domain-containing protein )

HSP 1 Score: 94.7 bits (234), Expect = 9.9e-20
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           II++     TS     ++   +++YF +PIT+A+ +LNVGLT+LKRRCRE GI RWPHRK
Sbjct: 119 IISDITTYTTSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRK 178

Query: 150 IKSIDGLIRDLQEEAKRR-EEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQ 209
           + S++ LI +++E  K   EE+ + L    +   ML+ E+ +IE  P  E + +TKR RQ
Sbjct: 179 LMSLNTLISNVKELQKMEGEENAEKLQDALE---MLEKEKRTIEDLPDLEFKDKTKRLRQ 238

Query: 210 DVFKRRHKAR 219
             FK  HK +
Sbjct: 239 ACFKANHKRK 245

[Close]

BLAST of CmaCh03G006240 vs. TAIR 10
Match: AT5G53040.1 (RWP-RK domain-containing protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-19
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 58  DSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDV 117
           DS  SS  A        +V V KV           +KKR    +    + +S++ ++FD 
Sbjct: 109 DSSSSSPLAIQNDGLISNVKVEKV---------TVKKKRNLKKKRQDKLEMSEIKQFFDR 168

Query: 118 PITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAV 177
           PI +A++ LNVGLTVLK+RCRE GI+RWPHRK+KS++ LI++L+      EE+ K     
Sbjct: 169 PIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNVG--MEEEVK----- 228

Query: 178 TKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKAR 219
                 L+  R  IE+ P  EL   TK+ RQ  FK  +K R
Sbjct: 229 -----NLEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRR 248

[Close]

BLAST of CmaCh03G006240 vs. TAIR 10
Match: AT5G66990.1 (RWP-RK domain-containing protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-18
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I  K+R      I  ++   + +YF +PIT+A++ LN+G+T+LK+RCRE GI RWPHRK+
Sbjct: 144 IIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKL 203

Query: 151 KSIDGLI---RDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFR 210
            S++ LI   +DL    K R    K   A+     +L+ E++ IE  P  E   +TKR R
Sbjct: 204 TSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPDLEFGDKTKRLR 263

Query: 211 QDVFKRRHKARALVSHS 225
           Q  FK ++K R L S S
Sbjct: 264 QACFKAKYKRRRLFSSS 276

The following BLAST results are available for this feature:

BLAST of CmaCh03G006240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81791	2.4e-34	57.81	Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1	[more]
Q9M9U9	6.2e-19	41.67	Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1	[more]
Q9CA66	1.4e-18	42.31	Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1	[more]
Q9LVU8	4.0e-18	38.51	Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1	[more]
Q9FGD1	2.0e-17	40.15	Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1	[more]

BLAST of CmaCh03G006240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1II45	1.6e-94	100.00	protein RKD5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477673 PE=4 SV...	[more]
A0A6J1II50	3.9e-72	83.98	protein RKD5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477673 PE=4 SV...	[more]
A0A6J1GEC7	1.9e-71	78.06	protein RKD5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 ...	[more]
A0A6J1GFB8	9.5e-71	82.32	protein RKD5-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 ...	[more]
A0A6J1BWV1	1.7e-59	86.43	protein RKD5 OS=Momordica charantia OX=3673 GN=LOC111005457 PE=4 SV=1	[more]

BLAST of CmaCh03G006240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977317.1	3.3e-94	100.00	protein RKD5-like isoform X1 [Cucurbita maxima] >XP_022977318.1 protein RKD5-lik...	[more]
KAG7034041.1	2.6e-75	78.50	Protein RKD5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022977320.1	8.0e-72	83.98	protein RKD5-like isoform X2 [Cucurbita maxima] >XP_022977321.1 protein RKD5-lik...	[more]
XP_023544127.1	3.0e-71	78.06	protein RKD5-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022950270.1	4.0e-71	78.06	protein RKD5-like isoform X1 [Cucurbita moschata] >XP_022950272.1 protein RKD5-l...	[more]

BLAST of CmaCh03G006240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35590.1	1.7e-35	57.81	RWP-RK domain-containing protein	[more]
AT1G18790.1	4.4e-20	41.67	RWP-RK domain-containing protein	[more]
AT1G74480.1	9.9e-20	42.31	RWP-RK domain-containing protein	[more]
AT5G53040.1	2.9e-19	38.51	RWP-RK domain-containing protein	[more]
AT5G66990.1	1.4e-18	40.15	RWP-RK domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 150..177
None	No IPR available	PANTHER	PTHR46373:SF12	PROTEIN RKD5	coord: 92..221
IPR003035	RWP-RK domain	PFAM	PF02042	RWP-RK	coord: 106..153 e-value: 1.4E-22 score: 79.4
IPR003035	RWP-RK domain	PROSITE	PS51519	RWP_RK	coord: 88..173 score: 18.871735
IPR044607	Transcription factor RKD-like	PANTHER	PTHR46373	PROTEIN RKD4	coord: 92..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006240.1	CmaCh03G006240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity