CmaCh03G006210 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G006210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal protein L11
Location	Cma_Chr03: 5411073 .. 5414175 (+)
RNA-Seq Expression	CmaCh03G006210
Synteny	CmaCh03G006210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCTGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCCGGCCATGTGGTCGCCTCTACGCTCACTCTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAATGCAATACCTAAAGTTCTAGGGTTTTTCTCCCCTTGTTCTTCGGTGTCTCGATTCAAATCGAACGTTTTTTCAGCGACCTCATTATTCGTAGTGTGAAATAGTGTTACTCTGTCAGCTAAGTCGGCAGTCTAATCTGCTGACATATTGAGTTTCTTATGATAGAATTTGAATCAATTCCAACGATTTACTACTGAATTTCCAGGAAAGGGGAGCTGAGATAATAGCTAAGTGTAACCATCTTTCTTGAAAGAAAAGTTTTCCTGATCACGAGGGATACAATTTTGCTATGGGATTGTAGCCTTTGTAATCAGTGAACTGGTTTCATTTTGATTAATAAATGTGCTGCCTTTGCTTGCATTTGCCAGTTACTTGCTCCTTCCAATTCGATATCTCTGGTATAAAATCCTGAATTCGATTAGCTATATGAAATTGTGCTTCGTTGTCATGTTAAATAGTAGTTCTGGGTCATCATTCACTTGCCCATTTCTTGCTGGTTAGTGGGCTATCCATTGCTTTTCATTTACTTTGCATCAGCTAATTGGATTTTTATGGGTTAGACCAGTTGGTTCAAATATTGGAGATAATGTGAGATCCCATATCGGTTGGAGAGGGGAACGAGCATTCTTTATAAGAGCGTGGAAATCTCTTCTTAGTAAATGCATTTTAAAATCATAAGGCTAACGACGATACGTAACGGGCCAAAGTAGACAATATTTGCTAGTGGTGGGCTTGAGTTGTTATTAATGGGCGAATTGATACATGTATATGGGGAGAAAATGAGGGAAAGTTATGACTTAAGACTATCTCATAGGACAACAACTCTACCCTACCATGCATGGTTTTTTTACTCTCATGCCCAAGTCACTTGGATCTGTCATATTTGGGGTGTATTGGCTATGCTTCACGACTTGCCCAACCCCATTAAATTGTAATTGGATACTTTGCTTGGTCAAGTGGTAACAATTATGACTCATTGATTTGGGGTCGGTTAGGAATCCAACTCTCCACAATAGTATGATATTGTCCATTCATAGTTATGGTTTTGCTTTTGGTTTCCCCAAAATGTCCTGTACCAATGAAGATATATTCCTTACTCATAAACACATGATCGATGTGGAACTCCCTCCAACAATGTCATCAAAGATTAGGAAGTTTAGTATAGCATGCCTAGTAGGGAACTTGGTTTTCTATTCTTGTTTATGCTATGTGATGTGCTTCACCATTATACAACCTGCCCCTTTCCCTCGCCCCAATGATTGACCTATTAGCCAAGAAAGATCTGAGAAAATCTTGAACTGTGAAGAGTTTCTCAATCTTATGAATGCAAAATGATAGGCTGTTGGTTGGTTCATAGCTTCTTCACTGCTTGTCTTTTGGAGCAATTAAAGATCACTTTAATGTGCAGTTTCCTGTTTGATTCTTATCTTATCTTCCGCTTTGATGTGTCTGGCTGCTGAAATGTGTGTCATTGATTGTATTACTGCTTCAAGATTGTCGGTTTTCACCTTTATCGTAGTGGCACCAGCGACCTGTGATGATATTGACCAGATTTATGAAAAAAATTAGGCACAGGAACAGCCAATATAGATTCATTACAAGGCTTGAATACGAGATTGATTAGCTCCAACCACACTGTTTAAGGCATACTTGACTAACTTTTGAAAGTATTAGAGCCTTTAGCTTATTGCATTTGTCTTCCCTTTTTTCAATCTCAAGTCATGTGACTAAACATTGCCTTTTTCTGAAATATGAGGGTGTTATCATATAGCCTTTTTTTTTTTTTTTTTTTTTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTTTTTTTTTTTCATAGATAATTTCATATTACCCATGGATAGAGAAAGTATGGAAAACTTAGACCAAAAACTAGATTAATGGTTAAATTACAAGTTTAGACTCATAAATTTGAGAATTGTGTCGATTTGGTTCTTGAATTTTCTAAATCGTTAATAGGTTTCGAGCTTTCAATTGGACGTAGATTCCATGTTCTATATTTGAAAGAGGTTGACCTCTTTGCTTCTCTCATGTTACAATCCTCTTCTTGCTAGGCTTGTTTTCTCCTCAATCCAGAGAGACAAAATGGAGGACTAG

mRNA sequence

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCTGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCCGGCCATGTGGTCGCCTCTACGCTCACTCTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGAGAGACAAAATGGAGGACTAG

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCTGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCCGGCCATGTGGTCGCCTCTACGCTCACTCTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGAGAGACAAAATGGAGGACTAG

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKRDKMED

Homology

[Close]

BLAST of CmaCh03G006210 vs. ExPASy Swiss-Prot
Match: Q9UTK2 (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-33
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P+TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GS  P H +   L+LKHIY+IAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIK 150
           KS+IGTA SMG+K
Sbjct: 129 KSVIGTAKSMGVK 141

[Close]

BLAST of CmaCh03G006210 vs. ExPASy Swiss-Prot
Match: Q2RQU9 (50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rplK PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-29
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQ  +P  P+ V ITA+
Sbjct: 3   KKIIGYIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAATQGLEPGMPIPVVITAY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYM 130
            D TF +  K+P +T++LKKAAGI  GS  PG   A T+T++ + DIA+ K  D      
Sbjct: 63  GDRTFTYITKTPPMTYFLKKAAGIGKGSTTPGKGSAGTVTMEQVRDIAEKKMPD--LNSP 122

Query: 131 PLESICKSIIGTANSMGIK 150
            +E+  + ++G+A SMG++
Sbjct: 123 TIEAAVQMVVGSARSMGLQ 139

[Close]

BLAST of CmaCh03G006210 vs. ExPASy Swiss-Prot
Match: O67758 (50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28
Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V ATI L +PA  A PAPPVGPALGQ+ +N+M F K FNA ++ Y+P T + V IT +
Sbjct: 3   KKVVATIELMLPAQQASPAPPVGPALGQHGVNIMEFVKQFNAASRDYEPGTILPVVITVY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYM 130
           +D +F F +K+P V++ LKKAAG+E GS  P  V    +T+K + +IAK+K  D      
Sbjct: 63  QDRSFTFIMKTPPVSYLLKKAAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKD--MNTR 122

Query: 131 PLESICKSIIGTANSMGIK 150
            L++  +++ GTA SMGI+
Sbjct: 123 DLKAAMRTVAGTAKSMGIE 139

[Close]

BLAST of CmaCh03G006210 vs. ExPASy Swiss-Prot
Match: Q3SSY4 (50S ribosomal protein L11 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplK PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28
Identity = 63/139 (45.32%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYM 130
            D +F F +K+P + ++LK+AA I+SGS  PG   A TLT   + +IA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMAYFLKQAAKIQSGSKTPGRDAAGTLTRAQVREIAEKKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIK 150
            +E+    + G+A SMG++
Sbjct: 123 TVEAAMSMVEGSARSMGLQ 139

[Close]

BLAST of CmaCh03G006210 vs. ExPASy Swiss-Prot
Match: A5ELP2 (50S ribosomal protein L11 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) OX=288000 GN=rplK PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG   A  +T   + +IA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSYFLKQAAKIQSGSKAPGRDKAGKVTKAQVREIAEKKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIK 150
            +ES  K + G+A SMG++
Sbjct: 123 SIESAMKMVEGSARSMGLE 139

[Close]

BLAST of CmaCh03G006210 vs. ExPASy TrEMBL
Match: A0A6J1IPM9 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111477675 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.5e-79
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. ExPASy TrEMBL
Match: A0A6J1GG89 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111453660 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.2e-78
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT+KHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDP+CQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. ExPASy TrEMBL
Match: A0A5A7T9U7 (54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00710 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 144/149 (96.64%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. ExPASy TrEMBL
Match: A0A6J1BU21 (54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005691 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 144/149 (96.64%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGS RPGHVVASTL+LKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. ExPASy TrEMBL
Match: A0A1S3BMZ5 (54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 144/149 (96.64%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. NCBI nr
Match: XP_022977323.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. NCBI nr
Match: XP_022950615.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 8.7e-78
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT+KHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDP+CQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. NCBI nr
Match: KAG7034038.1 (mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLT+KHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. NCBI nr
Match: KAG6603860.1 (hypothetical protein SDJN03_04469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLT+KHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. NCBI nr
Match: XP_038901904.1 (54S ribosomal protein L19, mitochondrial [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 150
           KQSDPYCQYMPLESICKSIIGTANSMGIK
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. TAIR 10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11 )

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-71
Identity = 126/148 (85.14%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS RPGH+  +TL+++H+Y+IAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIK 150
           Q+DP+CQYMPLESICKSIIGTANSMGIK
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIK 149

[Close]

BLAST of CmaCh03G006210 vs. TAIR 10
Match: AT1G32990.1 (plastid ribosomal protein l11 )

HSP 1 Score: 105.1 bits (261), Expect = 5.0e-23
Identity = 62/141 (43.97%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +T+  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKRD 152
            +ES  + I GTA +MGI  D
Sbjct: 192 TIESAMRIIAGTAANMGIDID 209

[Close]

BLAST of CmaCh03G006210 vs. TAIR 10
Match: AT5G51610.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +T+  +  IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKRD 152
           + S  ++I GTA +MGI  D
Sbjct: 152 IVSTMRTIAGTAGNMGIDID 169

The following BLAST results are available for this feature:

BLAST of CmaCh03G006210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UTK2	2.3e-33	50.38	54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q2RQU9	4.6e-29	46.04	50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1....	[more]
O67758	1.3e-28	46.04	50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=...	[more]
Q3SSY4	1.3e-28	45.32	50S ribosomal protein L11 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 1...	[more]
A5ELP2	1.7e-28	45.32	50S ribosomal protein L11 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) O...	[more]

BLAST of CmaCh03G006210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPM9	6.5e-79	100.00	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GG89	4.2e-78	98.66	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7T9U7	1.4e-76	96.64	54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BU21	1.4e-76	96.64	54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3BMZ5	1.4e-76	96.64	54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602...	[more]

BLAST of CmaCh03G006210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977323.1	1.3e-78	100.00	54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima]	[more]
XP_022950615.1	8.7e-78	98.66	54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347...	[more]
KAG7034038.1	1.5e-77	98.66	mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6603860.1	1.3e-76	97.99	hypothetical protein SDJN03_04469, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038901904.1	1.3e-76	97.32	54S ribosomal protein L19, mitochondrial [Benincasa hispida]	[more]

BLAST of CmaCh03G006210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35490.1	2.9e-71	85.14	mitochondrial ribosomal protein L11	[more]
AT1G32990.1	5.0e-23	43.97	plastid ribosomal protein l11	[more]
AT5G51610.1	1.7e-07	35.00	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 17..151 e-value: 2.3E-68 score: 243.1
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..150
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 13..152 score: 24.533903
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 17..149 e-value: 1.06024E-64 score: 191.895
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAM	TIGR01632	TIGR01632	coord: 13..149 e-value: 4.5E-54 score: 180.2
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 78..150 e-value: 5.6E-28 score: 98.9
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..149
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 80..149 e-value: 1.6E-27 score: 95.8
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 13..75 e-value: 1.7E-24 score: 85.4
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 11..77 e-value: 8.1E-27 score: 94.7
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 13..80
None	No IPR available	PANTHER	PTHR11661:SF1	39S RIBOSOMAL PROTEIN L11, MITOCHONDRIAL	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006210.1	CmaCh03G006210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome