CmaCh03G006160 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G006160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	trafficking protein particle complex subunit 11
Location	Cma_Chr03: 5388495 .. 5390124 (+)
RNA-Seq Expression	CmaCh03G006160
Synteny	CmaCh03G006160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTGATATCCACTCGGGCGAGTTAAAGATCAACATGGTTGATGTGCAAGGAGGTGGTTTGTTTAGCCCAAGGGAAACAGAACACCTTTTGGTTAGCCATCATGTTGAGCTTCTTGGCATTTCTTGTATGGAAGATGATGCGGAATCACATTTGATCTCTGATGAAGCAATGAAGATTAAGCAGTCTTTTGGACTGATTTCTGTTCCATTTCTAAAAAGTTGAGAGTCCTGGTCCTGCAAACTGCAAATTAAGTGGCATCGAGCGAAGCCCATTATGCTTTATGTATCCCTGGGTTATTCTTCACTTAGCGATGAACCAAATGCTAAAAAAATCAACGTCCAAAGGAGCTTGCAGATTGACGGAAAGCCTGCTGTCACAATCGGTCATCACTTTTTGTTGCCTTTCCGGCGGGACCGGTTGTTGCTTTCAAGGACTAAAGCAATCCCTCATTCCGACCAGTCATTTTCTCTGCCTCTAAATGAAACTTGCATACTTGTGGTCAGTGCACGGAATTGCACGGAGGTCCCGTTGCAACTATTATCCATGTCATTTGAAACAGATAATGACGGGATAGAAGAAAAGTCATGTTCCATCAAAAGTGCTAGCGATAACCTTGTAGACCCAGCTCTTCTCATGCCTGGGGAAGAATTTAAGAAGGTTTTCACTGTCACTTCCGAGATAAACCCATCAAAGCTTAGGGTAGGAAATGTGTTACTTGGGTGGAAAAGATATCTTAAAAAAGGGATTATCATGAGGAAGTCCATTTCATCATCATCATCACCATCCTACATTAGTCTTCACTCATGGTGGGCTCAACGATCAAGCTAACTAGTTCATTGACAGCCATCCCTGTAAAAACCAAACATGGTACCAAAGAGATGAGACCATCTAGGATTGTGCCAGAAGAGAAGAGAAGAGATGAAGAGATATTAAGATGAGAACTAGAGGGACCTCAAGCATGTTGTGTGTATATAAGCATAGGGATACTTCCCTTTATGATGATGAGTGCGAATGCACACAGTATAATAATGAGAGTGTTTATGGAGAACATGACATCAGGGGTTCCGCTGACCTCTGGTCATTGCTACAGACAGCTAGCTTGACCAGAGATGACCCAAGGGGTGTACGAGCCTCCAAACCCAAATCACAGTACATAAAAAGAAGCCGAGATCTCGTGGATATATTGATTTTATCATGAAGAAGATGACATAGCGGCCCAATATTTGGATAAAGAAACACTTCAGGCTGTTCCACGCCACCAATCCCAACTATTACCAGTTTGGAGACTCTCGCATCTTTTGGTACTACTCTGCTTCTGAACACAAACTAGCTGTGTTTACAAGGTTGGTGATGATTATAGATTTATTGTATTGATTTTGACGAGAATTCAGATTAGATTCATTTGATTTGTGAGAGAAGGAGAAAATGGTGAAAGAAGAAATGAAGGTAAGAATGTGGGGTTGGGAAGGGGACAAGGTCCATCAGGGAATTTGGGTTAGGGGCGTTAAGCCAACCTCCATGGCATGTGAAATGGTGATCTGAAGGTTGTTTTTGTTCGTGCAGTGTAGCGTGTAGCAGAGACAGAGAAGATAACAGGGCACGTGAGGCCGCCCCTCACAATTAA

mRNA sequence

ATGGGTCCTGATATCCACTCGGGCGAGTTAAAGATCAACATGGTTGATGTGCAAGGAGGTGGTTTGTTTAGCCCAAGGGAAACAGAACACCTTTTGGTTAGCCATCATGTTGAGCTTCTTGGCATTTCTTGTATGGAAGATGATGCGGAATCACATTTGATCTCTGATGAAGCAATGAAGATTAAGCAGTCTTTTGGACTGATTTCTGTTCCATTTCTAAAAAAGTCCTGGTCCTGCAAACTGCAAATTAAGTGGCATCGAGCGAAGCCCATTATGCTTTATGTATCCCTGGGTTATTCTTCACTTAGCGATGAACCAAATGCTAAAAAAATCAACGTCCAAAGGAGCTTGCAGATTGACGGAAAGCCTGCTGTCACAATCGGTCATCACTTTTTGTTGCCTTTCCGGCGGGACCGGTTGTTGCTTTCAAGGACTAAAGCAATCCCTCATTCCGACCAGTCATTTTCTCTGCCTCTAAATGAAACTTGCATACTTGTGGTCAGTGCACGGAATTGCACGGAGGTCCCGTTGCAACTATTATCCATGTCATTTGAAACAGATAATGACGGGATAGAAGAAAAGTCATGTTCCATCAAAAGTGCTAGCGATAACCTTGTAGACCCAGCTCTTCTCATGCCTGGGGAAGAATTTAAGAAGGTTTTCACTGTCACTTCCGAGATAAACCCATCAAAGCTTAGGGTAGGAAATGTGTTACTTGGGTGGAAAAGATATCTTAAAAAAGGGATTATCATGAGGAAGTCCATTTCATCATCATCATCACCATCCTACATTAGTCTTCACTCATGTGTAGCGTGTAGCAGAGACAGAGAAGATAACAGGGCACGTGAGGCCGCCCCTCACAATTAA

Coding sequence (CDS)

ATGGGTCCTGATATCCACTCGGGCGAGTTAAAGATCAACATGGTTGATGTGCAAGGAGGTGGTTTGTTTAGCCCAAGGGAAACAGAACACCTTTTGGTTAGCCATCATGTTGAGCTTCTTGGCATTTCTTGTATGGAAGATGATGCGGAATCACATTTGATCTCTGATGAAGCAATGAAGATTAAGCAGTCTTTTGGACTGATTTCTGTTCCATTTCTAAAAAAGTCCTGGTCCTGCAAACTGCAAATTAAGTGGCATCGAGCGAAGCCCATTATGCTTTATGTATCCCTGGGTTATTCTTCACTTAGCGATGAACCAAATGCTAAAAAAATCAACGTCCAAAGGAGCTTGCAGATTGACGGAAAGCCTGCTGTCACAATCGGTCATCACTTTTTGTTGCCTTTCCGGCGGGACCGGTTGTTGCTTTCAAGGACTAAAGCAATCCCTCATTCCGACCAGTCATTTTCTCTGCCTCTAAATGAAACTTGCATACTTGTGGTCAGTGCACGGAATTGCACGGAGGTCCCGTTGCAACTATTATCCATGTCATTTGAAACAGATAATGACGGGATAGAAGAAAAGTCATGTTCCATCAAAAGTGCTAGCGATAACCTTGTAGACCCAGCTCTTCTCATGCCTGGGGAAGAATTTAAGAAGGTTTTCACTGTCACTTCCGAGATAAACCCATCAAAGCTTAGGGTAGGAAATGTGTTACTTGGGTGGAAAAGATATCTTAAAAAAGGGATTATCATGAGGAAGTCCATTTCATCATCATCATCACCATCCTACATTAGTCTTCACTCATGTGTAGCGTGTAGCAGAGACAGAGAAGATAACAGGGCACGTGAGGCCGCCCCTCACAATTAA

Protein sequence

MGPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKIKQSFGLISVPFLKKSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQIDGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQLLSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLLGWKRYLKKGIIMRKSISSSSSPSYISLHSCVACSRDREDNRAREAAPHN

Homology

[Close]

BLAST of CmaCh03G006160 vs. ExPASy TrEMBL
Match: A0A5D3CPX4 (Thioredoxin reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00530 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.6e-116
Identity = 213/258 (82.56%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGISC+ED A+SHLISDE MKI
Sbjct: 1106 GPDIHAGELKINLVDVRGGGLFSPREAEHIADSHHVELLGISCVEDGAKSHLISDEEMKI 1165

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPI+LYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 1166 KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIVLYVSLGYSPLSNEPNAQKINVHRSLQI 1225

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNETCILV+SARNCTEVPLQL
Sbjct: 1226 DGKPAVTIGHHFLLPFRWDPLLLSRTKANPQSDQSLSLPLNETCILVISARNCTEVPLQL 1285

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI++ S NLVDPALLMPGEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 1286 VSMSIEADNDGIEEKSCSIRTGSSNLVDPALLMPGEEFKKVFTVTSEINPSKLRLGNVLL 1345

Query: 242  GWKRYLKKGIIMRKSISS 258
             WKRY +       SI+S
Sbjct: 1346 RWKRYSRSKDQHDSSIAS 1363

[Close]

BLAST of CmaCh03G006160 vs. ExPASy TrEMBL
Match: A0A5A7SMY3 (Thioredoxin reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00920 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.6e-116
Identity = 213/258 (82.56%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGISC+ED A+SHLISDE MKI
Sbjct: 1165 GPDIHAGELKINLVDVRGGGLFSPREAEHIADSHHVELLGISCVEDGAKSHLISDEEMKI 1224

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPI+LYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 1225 KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIVLYVSLGYSPLSNEPNAQKINVHRSLQI 1284

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNETCILV+SARNCTEVPLQL
Sbjct: 1285 DGKPAVTIGHHFLLPFRWDPLLLSRTKANPQSDQSLSLPLNETCILVISARNCTEVPLQL 1344

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI++ S NLVDPALLMPGEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 1345 VSMSIEADNDGIEEKSCSIRTGSSNLVDPALLMPGEEFKKVFTVTSEINPSKLRLGNVLL 1404

Query: 242  GWKRYLKKGIIMRKSISS 258
             WKRY +       SI+S
Sbjct: 1405 RWKRYSRSKDQHDSSIAS 1422

[Close]

BLAST of CmaCh03G006160 vs. ExPASy TrEMBL
Match: A0A1S3B1T6 (LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 OS=Cucumis melo OX=3656 GN=LOC103485201 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.6e-116
Identity = 213/258 (82.56%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGISC+ED A+SHLISDE MKI
Sbjct: 790  GPDIHAGELKINLVDVRGGGLFSPREAEHIADSHHVELLGISCVEDGAKSHLISDEEMKI 849

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPI+LYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 850  KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIVLYVSLGYSPLSNEPNAQKINVHRSLQI 909

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNETCILV+SARNCTEVPLQL
Sbjct: 910  DGKPAVTIGHHFLLPFRWDPLLLSRTKANPQSDQSLSLPLNETCILVISARNCTEVPLQL 969

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI++ S NLVDPALLMPGEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 970  VSMSIEADNDGIEEKSCSIRTGSSNLVDPALLMPGEEFKKVFTVTSEINPSKLRLGNVLL 1029

Query: 242  GWKRYLKKGIIMRKSISS 258
             WKRY +       SI+S
Sbjct: 1030 RWKRYSRSKDQHDSSIAS 1047

[Close]

BLAST of CmaCh03G006160 vs. ExPASy TrEMBL
Match: A0A6J1KSV4 (trafficking protein particle complex subunit 11 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496931 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.6e-115
Identity = 214/248 (86.29%), Postives = 226/248 (91.13%), Query Frame = 0


Query: 2   GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
           GPDIHSGELKIN+VDV+GGGLFSPRETE    SHHVELLGIS MED+A+SHLISDEAMKI
Sbjct: 645 GPDIHSGELKINLVDVRGGGLFSPRETESFSSSHHVELLGISGMEDNADSHLISDEAMKI 704

Query: 62  KQSFGLISVPFLKKS--WSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
           KQSFGLISVPFLK+   WSCKLQIKWHRAKPIMLYVSLGYS LSD+PNA+KINV RSLQI
Sbjct: 705 KQSFGLISVPFLKRGEPWSCKLQIKWHRAKPIMLYVSLGYSPLSDDPNAQKINVHRSLQI 764

Query: 122 DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
           DGKPAVTIGHH LLPFRRD LLLSRTKAIP SDQS SLPLNETCILV+SA+NCTEVPLQL
Sbjct: 765 DGKPAVTIGHHILLPFRRDALLLSRTKAIPQSDQSLSLPLNETCILVISAQNCTEVPLQL 824

Query: 182 LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSK-LRVGNVL 241
           LSMS E DNDGIEEKSCSIK+AS NLVDPALL PGEEFKKVFTVTSEIN SK +R+GNVL
Sbjct: 825 LSMSIEADNDGIEEKSCSIKNASSNLVDPALLTPGEEFKKVFTVTSEINSSKQIRLGNVL 884

Query: 242 LGWKRYLK 247
           L WKRY K
Sbjct: 885 LRWKRYSK 892

[Close]

BLAST of CmaCh03G006160 vs. ExPASy TrEMBL
Match: A0A6J1KLZ8 (trafficking protein particle complex subunit 11 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496931 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.6e-115
Identity = 214/248 (86.29%), Postives = 226/248 (91.13%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIHSGELKIN+VDV+GGGLFSPRETE    SHHVELLGIS MED+A+SHLISDEAMKI
Sbjct: 790  GPDIHSGELKINLVDVRGGGLFSPRETESFSSSHHVELLGISGMEDNADSHLISDEAMKI 849

Query: 62   KQSFGLISVPFLKKS--WSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK+   WSCKLQIKWHRAKPIMLYVSLGYS LSD+PNA+KINV RSLQI
Sbjct: 850  KQSFGLISVPFLKRGEPWSCKLQIKWHRAKPIMLYVSLGYSPLSDDPNAQKINVHRSLQI 909

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHH LLPFRRD LLLSRTKAIP SDQS SLPLNETCILV+SA+NCTEVPLQL
Sbjct: 910  DGKPAVTIGHHILLPFRRDALLLSRTKAIPQSDQSLSLPLNETCILVISAQNCTEVPLQL 969

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSK-LRVGNVL 241
            LSMS E DNDGIEEKSCSIK+AS NLVDPALL PGEEFKKVFTVTSEIN SK +R+GNVL
Sbjct: 970  LSMSIEADNDGIEEKSCSIKNASSNLVDPALLTPGEEFKKVFTVTSEINSSKQIRLGNVL 1029

Query: 242  LGWKRYLK 247
            L WKRY K
Sbjct: 1030 LRWKRYSK 1037

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: XP_038881668.1 (trafficking protein particle complex subunit 11 isoform X1 [Benincasa hispida])

HSP 1 Score: 428.7 bits (1101), Expect = 3.9e-116
Identity = 212/245 (86.53%), Postives = 224/245 (91.43%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGIS   DD ESHLISDE MKI
Sbjct: 789  GPDIHAGELKINLVDVRGGGLFSPREAEHVSDSHHVELLGISYTGDDTESHLISDEEMKI 848

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHRAKPIMLYVSLGYS L +EPNA+KINV RSLQI
Sbjct: 849  KQSFGLISVPFLKSGESWSCKLQIKWHRAKPIMLYVSLGYSPLGNEPNAQKINVHRSLQI 908

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFRRD LLLSRTKAIPH+DQS SLPLNETCILV SARNCTEVPL+L
Sbjct: 909  DGKPAVTIGHHFLLPFRRDPLLLSRTKAIPHADQSLSLPLNETCILVTSARNCTEVPLEL 968

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI+SAS NLVDPALLM GEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 969  ISMSIEADNDGIEEKSCSIRSASSNLVDPALLMAGEEFKKVFTVTSEINPSKLRLGNVLL 1028

Query: 242  GWKRY 245
             WKRY
Sbjct: 1029 RWKRY 1033

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: XP_038881669.1 (trafficking protein particle complex subunit 11 isoform X2 [Benincasa hispida])

HSP 1 Score: 428.7 bits (1101), Expect = 3.9e-116
Identity = 212/245 (86.53%), Postives = 224/245 (91.43%), Query Frame = 0


Query: 2   GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
           GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGIS   DD ESHLISDE MKI
Sbjct: 645 GPDIHAGELKINLVDVRGGGLFSPREAEHVSDSHHVELLGISYTGDDTESHLISDEEMKI 704

Query: 62  KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
           KQSFGLISVPFLK  +SWSCKLQIKWHRAKPIMLYVSLGYS L +EPNA+KINV RSLQI
Sbjct: 705 KQSFGLISVPFLKSGESWSCKLQIKWHRAKPIMLYVSLGYSPLGNEPNAQKINVHRSLQI 764

Query: 122 DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
           DGKPAVTIGHHFLLPFRRD LLLSRTKAIPH+DQS SLPLNETCILV SARNCTEVPL+L
Sbjct: 765 DGKPAVTIGHHFLLPFRRDPLLLSRTKAIPHADQSLSLPLNETCILVTSARNCTEVPLEL 824

Query: 182 LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
           +SMS E DNDGIEEKSCSI+SAS NLVDPALLM GEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 825 ISMSIEADNDGIEEKSCSIRSASSNLVDPALLMAGEEFKKVFTVTSEINPSKLRLGNVLL 884

Query: 242 GWKRY 245
            WKRY
Sbjct: 885 RWKRY 889

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: TYK12476.1 (trafficking protein particle complex subunit 11 [Cucumis melo var. makuwa])

HSP 1 Score: 427.2 bits (1097), Expect = 1.1e-115
Identity = 213/258 (82.56%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGISC+ED A+SHLISDE MKI
Sbjct: 1106 GPDIHAGELKINLVDVRGGGLFSPREAEHIADSHHVELLGISCVEDGAKSHLISDEEMKI 1165

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPI+LYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 1166 KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIVLYVSLGYSPLSNEPNAQKINVHRSLQI 1225

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNETCILV+SARNCTEVPLQL
Sbjct: 1226 DGKPAVTIGHHFLLPFRWDPLLLSRTKANPQSDQSLSLPLNETCILVISARNCTEVPLQL 1285

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI++ S NLVDPALLMPGEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 1286 VSMSIEADNDGIEEKSCSIRTGSSNLVDPALLMPGEEFKKVFTVTSEINPSKLRLGNVLL 1345

Query: 242  GWKRYLKKGIIMRKSISS 258
             WKRY +       SI+S
Sbjct: 1346 RWKRYSRSKDQHDSSIAS 1363

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: KAA0025601.1 (trafficking protein particle complex subunit 11 [Cucumis melo var. makuwa])

HSP 1 Score: 427.2 bits (1097), Expect = 1.1e-115
Identity = 213/258 (82.56%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGISC+ED A+SHLISDE MKI
Sbjct: 1165 GPDIHAGELKINLVDVRGGGLFSPREAEHIADSHHVELLGISCVEDGAKSHLISDEEMKI 1224

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPI+LYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 1225 KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIVLYVSLGYSPLSNEPNAQKINVHRSLQI 1284

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNETCILV+SARNCTEVPLQL
Sbjct: 1285 DGKPAVTIGHHFLLPFRWDPLLLSRTKANPQSDQSLSLPLNETCILVISARNCTEVPLQL 1344

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI++ S NLVDPALLMPGEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 1345 VSMSIEADNDGIEEKSCSIRTGSSNLVDPALLMPGEEFKKVFTVTSEINPSKLRLGNVLL 1404

Query: 242  GWKRYLKKGIIMRKSISS 258
             WKRY +       SI+S
Sbjct: 1405 RWKRYSRSKDQHDSSIAS 1422

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: XP_008440933.1 (PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 [Cucumis melo])

HSP 1 Score: 427.2 bits (1097), Expect = 1.1e-115
Identity = 213/258 (82.56%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGISC+ED A+SHLISDE MKI
Sbjct: 790  GPDIHAGELKINLVDVRGGGLFSPREAEHIADSHHVELLGISCVEDGAKSHLISDEEMKI 849

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPI+LYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 850  KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIVLYVSLGYSPLSNEPNAQKINVHRSLQI 909

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNETCILV+SARNCTEVPLQL
Sbjct: 910  DGKPAVTIGHHFLLPFRWDPLLLSRTKANPQSDQSLSLPLNETCILVISARNCTEVPLQL 969

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI++ S NLVDPALLMPGEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 970  VSMSIEADNDGIEEKSCSIRTGSSNLVDPALLMPGEEFKKVFTVTSEINPSKLRLGNVLL 1029

Query: 242  GWKRYLKKGIIMRKSISS 258
             WKRY +       SI+S
Sbjct: 1030 RWKRYSRSKDQHDSSIAS 1047

[Close]

BLAST of CmaCh03G006160 vs. TAIR 10
Match: AT5G65950.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 248.1 bits (632), Expect = 8.9e-66
Identity = 133/247 (53.85%), Postives = 169/247 (68.42%), Query Frame = 0


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHL-LVSHHVELLGISCMEDDAESHLISDEAMK 61
            G  ++SGELKIN+VDV GGGLFSPRE E   L SHHVE+ GI   E + ES   +    K
Sbjct: 803  GHAVYSGELKINLVDVGGGGLFSPREAEPFSLESHHVEICGIDGAEGNNESESETGSIKK 862

Query: 62   IKQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQ 121
            I+QSFGL+SVP+LK  +SWSCKL+IKWHR KP+ML+VSLGY     E N +K+++ +SLQ
Sbjct: 863  IQQSFGLVSVPYLKEGESWSCKLEIKWHRPKPVMLFVSLGYLPHGSEANTQKVHIHKSLQ 922

Query: 122  IDGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQ 181
            I+GK  + I + F+LP+RRD LLL+R K  P S+   SLPLNE  +LVVSA+NC+E+ L+
Sbjct: 923  IEGKMPLLISNRFMLPYRRDHLLLNRIKPAPDSEDVSSLPLNEKSVLVVSAKNCSEIALK 982

Query: 182  LLSMSFETDNDGIEEKSCSIKSASDNLVDP--ALLMPGEEFKKVFTVTSEINPSKLRVGN 241
            L+SMS E D D   E SC I+        P  A L PGEEFKKVFTV       KL +G+
Sbjct: 983  LVSMSIEFD-DEQGETSCLIQQGGGCGDSPSSANLAPGEEFKKVFTVIPTTRTPKLGLGS 1042

Query: 242  VLLGWKR 244
            + L W+R
Sbjct: 1043 IHLKWRR 1048

The following BLAST results are available for this feature:

BLAST of CmaCh03G006160 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G006160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPX4	5.6e-116	82.56	Thioredoxin reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25...	[more]
A0A5A7SMY3	5.6e-116	82.56	Thioredoxin reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25...	[more]
A0A1S3B1T6	5.6e-116	82.56	LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 OS=Cucumis ...	[more]
A0A6J1KSV4	1.6e-115	86.29	trafficking protein particle complex subunit 11 isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1KLZ8	1.6e-115	86.29	trafficking protein particle complex subunit 11 isoform X1 OS=Cucurbita maxima O...	[more]

BLAST of CmaCh03G006160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881668.1	3.9e-116	86.53	trafficking protein particle complex subunit 11 isoform X1 [Benincasa hispida]	[more]
XP_038881669.1	3.9e-116	86.53	trafficking protein particle complex subunit 11 isoform X2 [Benincasa hispida]	[more]
TYK12476.1	1.1e-115	82.56	trafficking protein particle complex subunit 11 [Cucumis melo var. makuwa]	[more]
KAA0025601.1	1.1e-115	82.56	trafficking protein particle complex subunit 11 [Cucumis melo var. makuwa]	[more]
XP_008440933.1	1.1e-115	82.56	PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 ...	[more]

BLAST of CmaCh03G006160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65950.1	8.9e-66	53.85	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14374	FOIE GRAS	coord: 4..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006160.1	CmaCh03G006160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004791	thioredoxin-disulfide reductase activity