Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATTGCATCAACGCAGCCCATTTCCGACCTCTGCAAAAGTTGAAACATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAACTTATAAAGGCCTAAACCTAACAACCCAAGACTTTACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGCTGAATTGTGCAAACTCCCCAAGATCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCTTGAGAAACTCCGGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGTTCGACGATCGACGCCCCAGGTGGTGCCCCGCCTTGCCTACAATTCTCGAGGTTCATAATTACTAG
mRNA sequence
ATGGGGAATTGCATCAACGCAGCCCATTTCCGACCTCTGCAAAAGTTGAAACATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAACTTATAAAGGCCTAAACCTAACAACCCAAGACTTTACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGCTGAATTGTGCAAACTCCCCAAGATCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCTTGAGAAACTCCGGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGTTCGACGATCGACGCCCCAGGTGGTGCCCCGCCTTGCCTACAATTCTCGAGGTTCATAATTACTAG
Coding sequence (CDS)
ATGGGGAATTGCATCAACGCAGCCCATTTCCGACCTCTGCAAAAGTTGAAACATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAACTTATAAAGGCCTAAACCTAACAACCCAAGACTTTACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGCTGAATTGTGCAAACTCCCCAAGATCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCTTGAGAAACTCCGGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGTTCGACGATCGACGCCCCAGGTGGTGCCCCGCCTTGCCTACAATTCTCGAGGTTCATAATTACTAG
Protein sequence
MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEVDRGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQFSDSFEFDDRRPRWCPALPTILEVHNY
Homology
BLAST of CmaCh03G005880 vs. ExPASy TrEMBL
Match:
A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 99/147 (67.35%), Postives = 107/147 (72.79%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEV 60
MGNCIN HF PLQK+K ICCE EDL+LALPIE IA+ Q FTTSSAV E
Sbjct: 1 MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA-------CKNQAFTTSSAVAEA 60
Query: 61 D-RGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQ 120
+ PPPLPVRI D ++ KPA+LCKLPK TTIVVSKQQLELILR S F SKGIAVQ
Sbjct: 61 EVEHGPPPLPVRI---DHSIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQ 120
Query: 121 FSDSFEFDDRRPRWCPALPTILEVHNY 147
FSDSF+ DD PRW PALPTI EV NY
Sbjct: 121 FSDSFKVDDGCPRWHPALPTIPEVRNY 136
BLAST of CmaCh03G005880 vs. ExPASy TrEMBL
Match:
A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 94/147 (63.95%), Postives = 103/147 (70.07%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIAS-GTYKGLNLTTQDFTTSSAVLE 60
MGNCIN HF PLQK+K ICCE E L L LPI +A+ G K +Q FTTSSAV E
Sbjct: 1 MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVAAYGDCK-----SQAFTTSSAVAE 60
Query: 61 VDRGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQ 120
V +PPPLPVRI D ++ KPA+ KLPK TIVVSKQQLELILR S F SKGIAVQ
Sbjct: 61 VQH-SPPPLPVRI---DHSIVKPADKSKLPK-ATIVVSKQQLELILRKSKNFGSKGIAVQ 120
Query: 121 FSDSFEFDDRRPRWCPALPTILEVHNY 147
FSD F+ DD PRW PALPTI EV NY
Sbjct: 121 FSDRFKVDDGCPRWHPALPTIPEVRNY 137
BLAST of CmaCh03G005880 vs. ExPASy TrEMBL
Match:
A0A6A1W907 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 53/162 (32.72%), Postives = 76/162 (46.91%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGE-DLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLE 60
MGNC + +K++ L+ EGE + S P+EKI G Y G L S +L
Sbjct: 1 MGNCADVMLRPTEEKIRVLVFNEGEKEFSARTPVEKITCGPYSGFKLVHHS-QPDSPLLP 60
Query: 61 VDRGAP---------------PPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELI 120
R P PP+P R + + K + IVV+K QLEL+
Sbjct: 61 DARLQPGELYYLVPLQAQPHHPPIPSRTANQETGKQKKVK---------IVVTKGQLELL 120
Query: 121 LRNSGKFASKGIAVQFSDSFEFDDRRPRWCPALPTILEVHNY 147
LR++ KF SK IA+ SF+ + R +W P+L I EVH++
Sbjct: 121 LRSTDKFKSKDIAIHCLGSFQVGEGRRKWRPSLTMIPEVHSF 152
BLAST of CmaCh03G005880 vs. ExPASy TrEMBL
Match:
B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 4.6e-10
Identity = 56/155 (36.13%), Postives = 83/155 (53.55%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGE-DLSLALPIEKIASGTYKGLNL--TTQDFTTSSAV 60
MGNCI+ + ++ K LI GE + + ++KI SG Y G L + +
Sbjct: 1 MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60
Query: 61 LEVDRGA----PPPL--PVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKF 120
++ G P L P R++ + E C K+ IVV++QQLEL+LRNS +F
Sbjct: 61 TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQ--ETCASRKV-KIVVTRQQLELLLRNSKQF 120
Query: 121 ASKGIAVQFSDSFEFDDRRPRWCPALPTILEVHNY 147
SKGIAV+FS+SF+ +R +W P+L TI EV +
Sbjct: 121 RSKGIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150
BLAST of CmaCh03G005880 vs. ExPASy TrEMBL
Match:
A0A5N5M953 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGE-DLSLALPIEKIASGTYKGLNLTTQDFTTS----S 60
MGNCI+ ++ K LI GE + + P++KI SG Y G L + +
Sbjct: 1 MGNCIDFMPCSSGERSKVLIHNGGEKEFKSSTPVKKITSGRYGGYILVNRALPYAPLPPD 60
Query: 61 AVLEVDR--GAPPPL--PVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKF 120
VLE PPL P R++ + E C K+ IVV++QQLEL+LRNS +
Sbjct: 61 TVLEPGEVYHLMPPLDQPSRLEVSSKLTGQ--EACAGRKV-KIVVTRQQLELLLRNSKQL 120
Query: 121 ASKGIAVQFSDSFEFDDRRPRWCPALPTILEV 144
+GIAVQFS+SF+ + + +W P+L TI EV
Sbjct: 121 KLRGIAVQFSESFK--EGKRKWQPSLVTIPEV 147
BLAST of CmaCh03G005880 vs. NCBI nr
Match:
KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 235.0 bits (598), Expect = 4.2e-58
Identity = 124/146 (84.93%), Postives = 124/146 (84.93%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEV 60
MGNCIN AHFRPLQKLK LICCEGEDLSLALPIEKIASG Y TTSSAVLEV
Sbjct: 1 MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIASGAY----------TTSSAVLEV 60
Query: 61 DRGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQF 120
DRGA PPLPV I DDDDAVSKP LCKLPK TTIVVSKQQLELILRNS KFASKGIAVQF
Sbjct: 61 DRGA-PPLPVSI-DDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQF 120
Query: 121 SDSFEFDDRRPRWCPALPTILEVHNY 147
SDSFE DDR PRWCPALPTILEVHNY
Sbjct: 121 SDSFEVDDRCPRWCPALPTILEVHNY 134
BLAST of CmaCh03G005880 vs. NCBI nr
Match:
KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])
HSP 1 Score: 172.2 bits (435), Expect = 3.4e-39
Identity = 96/143 (67.13%), Postives = 104/143 (72.73%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEV 60
MGNCIN HF PLQK+K ICCE EDL+LALPIE IA+ Q FTTSSAV E
Sbjct: 1 MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA-------CKNQAFTTSSAVAEA 60
Query: 61 D-RGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQ 120
+ PPPLPVRI D ++ KPA+LCKLPK TTIVVSKQQLELILR S F SKGIAVQ
Sbjct: 61 EVEHGPPPLPVRI---DHSIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQ 120
Query: 121 FSDSFEFDDRRPRWCPALPTILE 143
FSDSF+ DD PRW PALPTI E
Sbjct: 121 FSDSFKVDDGCPRWHPALPTIPE 132
BLAST of CmaCh03G005880 vs. NCBI nr
Match:
KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])
HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 94/147 (63.95%), Postives = 103/147 (70.07%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIAS-GTYKGLNLTTQDFTTSSAVLE 60
MGNCIN HF PLQK+K ICCE E L L LPI +A+ G K +Q FTTSSAV E
Sbjct: 1 MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVAAYGDCK-----SQAFTTSSAVAE 60
Query: 61 VDRGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQ 120
V +PPPLPVRI D ++ KPA+ KLPK TIVVSKQQLELILR S F SKGIAVQ
Sbjct: 61 VQH-SPPPLPVRI---DHSIVKPADKSKLPK-ATIVVSKQQLELILRKSKNFGSKGIAVQ 120
Query: 121 FSDSFEFDDRRPRWCPALPTILEVHNY 147
FSD F+ DD PRW PALPTI EV NY
Sbjct: 121 FSDRFKVDDGCPRWHPALPTIPEVRNY 137
BLAST of CmaCh03G005880 vs. NCBI nr
Match:
KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 138.7 bits (348), Expect = 4.1e-29
Identity = 84/147 (57.14%), Postives = 95/147 (64.63%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEV 60
MGNCI++ H LA+P+EKIA GL LT SAVLEV
Sbjct: 1 MGNCISSPHL----------------YDLAVPVEKIA-----GLKLT-------SAVLEV 60
Query: 61 DRG-APPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQ 120
RG A PP V IDDDDD ++KPA LCKLPK TIVVSK+QLE +L NS +F S+GIAVQ
Sbjct: 61 GRGAATPPAHVLIDDDDD-ITKPAALCKLPK-ATIVVSKEQLEFLLTNSQQFGSQGIAVQ 117
Query: 121 FSDSFEFDDRRPRWCPALPTILEVHNY 147
FSDSF+FD RWCP LPTILEVHNY
Sbjct: 121 FSDSFKFDRSCSRWCPVLPTILEVHNY 117
BLAST of CmaCh03G005880 vs. NCBI nr
Match:
KAF9679416.1 (hypothetical protein SADUNF_Sadunf06G0012900 [Salix dunnii])
HSP 1 Score: 75.5 bits (184), Expect = 4.3e-10
Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 0
Query: 1 MGNCINAAHFRPLQKLKHLICCEGE-DLSLALPIEKIASGTYKGLNLTTQDFTTSS---- 60
MGNCI+ + ++ + LI GE + + P++KI SG Y G L ++ +S
Sbjct: 1 MGNCIDVMPYSSAERSRVLIHNGGEKEFRSSTPVKKITSGRYGGYILVKRELPYASLPPD 60
Query: 61 AVLEVDR--GAPPPL--PVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKF 120
VLE PPL P R++ + E C K+ IVV++QQLEL+LRNS +
Sbjct: 61 TVLEPGEVYYLMPPLDQPYRLEVSSKLTGQ--ETCAGRKV-KIVVTRQQLELLLRNSKQL 120
Query: 121 ASKGIAVQFSDSFEFDDRRPRWCPALPTILEV 144
+GIAVQFS+SF+ + + +W P+L TI EV
Sbjct: 121 KLRGIAVQFSESFK--EGKRKWQPSLVTIPEV 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KHP3 | 1.3e-41 | 67.35 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1 | [more] |
A0A5D3CLY8 | 5.8e-37 | 63.95 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6A1W907 | 2.7e-10 | 32.72 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1 | [more] |
B9HD50 | 4.6e-10 | 36.13 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ... | [more] |
A0A5N5M953 | 6.7e-09 | 37.50 | Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6603830.1 | 4.2e-58 | 84.93 | hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8647639.1 | 3.4e-39 | 67.13 | hypothetical protein Csa_004428 [Cucumis sativus] | [more] |
KAA0025575.1 | 1.2e-36 | 63.95 | hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245... | [more] |
KAG6594706.1 | 4.1e-29 | 57.14 | hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAF9679416.1 | 4.3e-10 | 37.50 | hypothetical protein SADUNF_Sadunf06G0012900 [Salix dunnii] | [more] |
Match Name | E-value | Identity | Description | |