CmaCh03G005840 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G005840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	TPD1 protein homolog 1-like
Location	Cma_Chr03: 5263391 .. 5264168 (-)
RNA-Seq Expression	CmaCh03G005840
Synteny	CmaCh03G005840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTGGTGCTTTTCCCAGATTTTTCCTCTGTTTTTCCCTGTTTCTTGGTAATTCTTCTGTTCTTTTAGTGGATCTTCTTCCCCATGTCATTTAAATTTATACCCAACCAGTTTTACTGTCTTTTGATTTGGAATATTCAGCGTTCAAGTTGGTTCGTTTGAGTGTTGTTCAGGCGGCTGCAAGAGAAAAAAACAGTGGAATTTCTTGGATGTCGCTTCAGTCTTCTAAAACTGGTAAGAAACGCATTGTTACAATTGTTCATTAGTTCTTTACTTATAAACCATGAATCTTATTCTAAATAGGTCGAGGGATGAATCGGGTTGGTTCAGAATGTTCAAAAGACGACGTGGTTGTATTTCAAGGGCAAACAGCTCCACTTCCAGATGGGATTCCATCGTTCATAGTTCAGATCTTAAATTCATGTTCTTCAGGCTGCAGCATCTCCAACATTCACATGAAATGTGGTTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTCCGGCGAGTCAAGTATGATGACTGCCTTATCAACGACGGCAAGGCTCTTGGTCCTGGCCAAACTCTGTCATTTCAATATGCTAACACTTTTCTTTACCCTCTTTCTGTATCTTCTGTAACTTGTTCTTCGTGACTTAACAAGCCTATGAACAGATAGCCCTTGTGGACCTTATGAATTGTCTATGATCCTTTAGTTTTCTAAGAACTTCTCACATTAATCATTTGATCGACTTTCTGTGTACATTCTGTTATAATCTTCTGTCAATTCG

mRNA sequence

ATGAAAGTTGGTGCTTTTCCCAGATTTTTCCTCTGTTTTTCCCTGTTTCTTGCGTTCAAGTTGGTTCGTTTGAGTGTTGTTCAGGCGGCTGCAAGAGAAAAAAACAGTGGAATTTCTTGGATGTCGCTTCAGTCTTCTAAAACTGGTCGAGGGATGAATCGGGTTGGTTCAGAATGTTCAAAAGACGACGTGGTTGTATTTCAAGGGCAAACAGCTCCACTTCCAGATGGGATTCCATCGTTCATAGTTCAGATCTTAAATTCATGTTCTTCAGGCTGCAGCATCTCCAACATTCACATGAAATGTGGTTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTCCGGCGAGTCAAGTATGATGACTGCCTTATCAACGACGGCAAGGCTCTTGGTCCTGGCCAAACTCTGTCATTTCAATATGCTAACACTTTTCTTTACCCTCTTTCTGTATCTTCTGTAACTTGTTCTTCGTGACTTAACAAGCCTATGAACAGATAGCCCTTGTGGACCTTATGAATTGTCTATGATCCTTTAGTTTTCTAAGAACTTCTCACATTAATCATTTGATCGACTTTCTGTGTACATTCTGTTATAATCTTCTGTCAATTCG

Coding sequence (CDS)

ATGAAAGTTGGTGCTTTTCCCAGATTTTTCCTCTGTTTTTCCCTGTTTCTTGCGTTCAAGTTGGTTCGTTTGAGTGTTGTTCAGGCGGCTGCAAGAGAAAAAAACAGTGGAATTTCTTGGATGTCGCTTCAGTCTTCTAAAACTGGTCGAGGGATGAATCGGGTTGGTTCAGAATGTTCAAAAGACGACGTGGTTGTATTTCAAGGGCAAACAGCTCCACTTCCAGATGGGATTCCATCGTTCATAGTTCAGATCTTAAATTCATGTTCTTCAGGCTGCAGCATCTCCAACATTCACATGAAATGTGGTTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTCCGGCGAGTCAAGTATGATGACTGCCTTATCAACGACGGCAAGGCTCTTGGTCCTGGCCAAACTCTGTCATTTCAATATGCTAACACTTTTCTTTACCCTCTTTCTGTATCTTCTGTAACTTGTTCTTCGTGA

Protein sequence

MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS

Homology

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BLAST of CmaCh03G005840 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           E  + +S   L S   G G NR+G +CSKDD+V+FQG T PLP G+PS+ V+I NSC S 
Sbjct: 54  ENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSD 113

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           C+I+ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ LGPGQ+LSFQYAN+F YPLSV
Sbjct: 114 CNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSV 173

Query: 153 SSVTC 158
           +SV+C
Sbjct: 174 ASVSC 178

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BLAST of CmaCh03G005840 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.7e-35
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 41  MSLQSSKTGRGM--NRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNI 100
           +S  + KT R +   R+G +C   D+VV Q  T P+P+GIP ++V+I N C SGC IS I
Sbjct: 57  LSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRI 116

Query: 101 HMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           H+ CGWFSSA+L+NPR+F+R+ YDDCL+N+GK L  G TLSF YANTF Y LSV+ VTC+
Sbjct: 117 HINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176

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BLAST of CmaCh03G005840 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-29
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 54  RVGSECS-KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG------CSISNIHMKCGWFS 113
           RV   C+  DD+ ++QG+  PLP G+P++ V ++N C+ G      C+I+ IH++CGWFS
Sbjct: 109 RVDDGCAGADDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFS 168

Query: 114 SARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTC 158
           S  LV+PR+FRR+ +DDCL+NDG+ L  G+T+SF+Y N+F Y LSVS  TC
Sbjct: 169 SVSLVDPRVFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

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BLAST of CmaCh03G005840 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-24
Identity = 46/99 (46.46%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 59  CSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRR 118
           CS+ +VVV+Q     LP GIP++ V+I+N C++ C++ ++H+ CG F+SA LV+P  F+R
Sbjct: 71  CSEQNVVVYQNNAEHLPSGIPTYSVEIINVCTA-CTVYDVHISCGEFASAELVDPSQFQR 130

Query: 119 VKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTC 158
           + ++DCL+  G  LGP + +SFQY+N+F YPL+V++V C
Sbjct: 131 IGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

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BLAST of CmaCh03G005840 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.6e-07
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 81  FIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKYD--DCLINDGKALGPGQTL 140
           F V+++N C   C I N+ +KC  F  + LV+P   R +     +C++NDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 141 SFQYANTFLYPL 151
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

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BLAST of CmaCh03G005840 vs. ExPASy TrEMBL
Match: A0A6J1ITT0 (TPD1 protein homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478358 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60
           MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS
Sbjct: 1   MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60

Query: 61  KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120
           KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK
Sbjct: 61  KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120

Query: 121 YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
           YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS
Sbjct: 121 YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 159

[Close]

BLAST of CmaCh03G005840 vs. ExPASy TrEMBL
Match: A0A6J1GDB1 (TPD1 protein homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453150 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.7e-80
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60
           M  GAF  FFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS
Sbjct: 1   MNDGAFRSFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60

Query: 61  KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120
           KD+VVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK
Sbjct: 61  KDEVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120

Query: 121 YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
           YDDCLINDGKALGPGQTLSFQYANTF YPLSVSSVTCSS
Sbjct: 121 YDDCLINDGKALGPGQTLSFQYANTFPYPLSVSSVTCSS 159

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BLAST of CmaCh03G005840 vs. ExPASy TrEMBL
Match: A0A5D3CRM1 (TPD1 protein-like protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005860 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.7e-62
Identity = 118/157 (75.16%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 4   GAFPRFFLCF--SLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECSK 63
           GAF RF LCF  ++FL FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GSECSK
Sbjct: 5   GAFHRFCLCFLLAIFLEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSK 64

Query: 64  DDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKY 123
           +D+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV Y
Sbjct: 65  EDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSY 124

Query: 124 DDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           DDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCS
Sbjct: 125 DDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 161

[Close]

BLAST of CmaCh03G005840 vs. ExPASy TrEMBL
Match: A0A1S3B0B6 (TPD1 protein homolog 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484668 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.3e-61
Identity = 118/157 (75.16%), Postives = 136/157 (86.62%), Query Frame = 0


Query: 4   GAFPRFFLCF--SLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECSK 63
           GAF RF LCF  ++FL FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GSECSK
Sbjct: 5   GAFHRFCLCFLLAIFLEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSK 64

Query: 64  DDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKY 123
            D+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV Y
Sbjct: 65  KDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSY 124

Query: 124 DDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           DDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCS
Sbjct: 125 DDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 161

[Close]

BLAST of CmaCh03G005840 vs. ExPASy TrEMBL
Match: A0A1S3AZV4 (TPD1 protein homolog 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484668 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.1e-60
Identity = 118/159 (74.21%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 4   GAFPRFFLCF--SLFLA--FKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSEC 63
           GAF RF LCF  ++FL   FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GSEC
Sbjct: 5   GAFHRFCLCFLLAIFLGNEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSEC 64

Query: 64  SKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRV 123
           SK D+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV
Sbjct: 65  SKKDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRV 124

Query: 124 KYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
            YDDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCS
Sbjct: 125 SYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 163

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: XP_022978329.1 (TPD1 protein homolog 1-like [Cucurbita maxima])

HSP 1 Score: 322.4 bits (825), Expect = 2.2e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60
           MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS
Sbjct: 1   MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60

Query: 61  KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120
           KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK
Sbjct: 61  KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120

Query: 121 YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
           YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS
Sbjct: 121 YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 159

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: XP_022949891.1 (TPD1 protein homolog 1-like [Cucurbita moschata] >KAG6603826.1 TPD1 protein-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034007.1 TPD1 protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.8 bits (787), Expect = 5.6e-80
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60
           M  GAF  FFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS
Sbjct: 1   MNDGAFRSFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60

Query: 61  KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120
           KD+VVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK
Sbjct: 61  KDEVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120

Query: 121 YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
           YDDCLINDGKALGPGQTLSFQYANTF YPLSVSSVTCSS
Sbjct: 121 YDDCLINDGKALGPGQTLSFQYANTFPYPLSVSSVTCSS 159

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: XP_023544807.1 (TPD1 protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.4 bits (786), Expect = 7.3e-80
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60
           MK GAF  FFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS
Sbjct: 1   MKGGAFRSFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECS 60

Query: 61  KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120
           KD+VVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK
Sbjct: 61  KDEVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVK 120

Query: 121 YDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
           YDDCLINDGKAL PGQTLSFQYANTF YPLSVSSVTCSS
Sbjct: 121 YDDCLINDGKALAPGQTLSFQYANTFPYPLSVSSVTCSS 159

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: XP_038880861.1 (TPD1 protein homolog 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 264.6 bits (675), Expect = 5.4e-67
Identity = 131/161 (81.37%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 1   MKVGAFPRFFLCFSL--FLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSE 60
           MK GAF RF LCF L  FL FKLV L VVQAAAREK +GIS MSLQSS +G+ MNR+GSE
Sbjct: 1   MKGGAFHRFSLCFLLACFLEFKLVHLRVVQAAAREKRNGISGMSLQSSNSGKEMNRIGSE 60

Query: 61  CSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRR 120
           CSKDDV++FQGQT PLPDGIP++IVQILNSC+S CSISNIHMKCGWFSSARLVNPRIFRR
Sbjct: 61  CSKDDVIIFQGQTTPLPDGIPTYIVQILNSCASDCSISNIHMKCGWFSSARLVNPRIFRR 120

Query: 121 VKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
           V YDDCL+++G+ALGPGQTLSFQYANTF YPLSVSSVTCSS
Sbjct: 121 VSYDDCLVDNGQALGPGQTLSFQYANTFPYPLSVSSVTCSS 161

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: TYK12989.1 (TPD1 protein-like protein 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 118/157 (75.16%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 4   GAFPRFFLCF--SLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECSK 63
           GAF RF LCF  ++FL FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GSECSK
Sbjct: 5   GAFHRFCLCFLLAIFLEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSK 64

Query: 64  DDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKY 123
           +D+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV Y
Sbjct: 65  EDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSY 124

Query: 124 DDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           DDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCS
Sbjct: 125 DDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 161

[Close]

BLAST of CmaCh03G005840 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-46
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           E  + +S   L S   G G NR+G +CSKDD+V+FQG T PLP G+PS+ V+I NSC S 
Sbjct: 54  ENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSD 113

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           C+I+ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ LGPGQ+LSFQYAN+F YPLSV
Sbjct: 114 CNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSV 173

Query: 153 SSVTC 158
           +SV+C
Sbjct: 174 ASVSC 178

[Close]

BLAST of CmaCh03G005840 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 147.9 bits (372), Expect = 6.9e-36
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 41  MSLQSSKTGRGM--NRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNI 100
           +S  + KT R +   R+G +C   D+VV Q  T P+P+GIP ++V+I N C SGC IS I
Sbjct: 57  LSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRI 116

Query: 101 HMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           H+ CGWFSSA+L+NPR+F+R+ YDDCL+N+GK L  G TLSF YANTF Y LSV+ VTC+
Sbjct: 117 HINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176

[Close]

BLAST of CmaCh03G005840 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 55.1 bits (131), Expect = 6.1e-08
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 81  FIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKYD--DCLINDGKALGPGQTL 140
           F V+++N C   C I N+ +KC  F  + LV+P   R +     +C++NDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 141 SFQYANTFLYPL 151
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

The following BLAST results are available for this feature:

BLAST of CmaCh03G005840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3T1	1.4e-44	63.20	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
Q6TLJ2	9.7e-35	55.83	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
Q2QR54	3.6e-29	49.55	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
Q8S6P9	4.5e-24	46.46	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
A8MS78	8.6e-07	40.28	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of CmaCh03G005840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ITT0	1.1e-84	100.00	TPD1 protein homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478358 PE=4 SV=...	[more]
A0A6J1GDB1	2.7e-80	96.23	TPD1 protein homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453150 PE=4 S...	[more]
A0A5D3CRM1	5.7e-62	75.16	TPD1 protein-like protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B0B6	1.3e-61	75.16	TPD1 protein homolog 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484668 P...	[more]
A0A1S3AZV4	3.1e-60	74.21	TPD1 protein homolog 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484668 P...	[more]

BLAST of CmaCh03G005840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978329.1	2.2e-84	100.00	TPD1 protein homolog 1-like [Cucurbita maxima]	[more]
XP_022949891.1	5.6e-80	96.23	TPD1 protein homolog 1-like [Cucurbita moschata] >KAG6603826.1 TPD1 protein-like...	[more]
XP_023544807.1	7.3e-80	96.23	TPD1 protein homolog 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038880861.1	5.4e-67	81.37	TPD1 protein homolog 1-like isoform X2 [Benincasa hispida]	[more]
TYK12989.1	1.2e-61	75.16	TPD1 protein-like protein 1-like isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh03G005840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32583.1	9.6e-46	63.20	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G24972.1	6.9e-36	55.83	tapetum determinant 1	[more]
AT1G05835.1	6.1e-08	40.28	PHD finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 49..158
None	No IPR available	PANTHER	PTHR33184:SF67	PROTEIN TAPETUM DETERMINANT 1	coord: 49..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G005840.1	CmaCh03G005840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination
biological_process	GO:0009408	response to heat
cellular_component	GO:0016021	integral component of membrane