CmaCh03G004090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G004090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Early nodulin-75-like
Location	Cma_Chr03: 4456609 .. 4456905 (+)
RNA-Seq Expression	CmaCh03G004090
Synteny	CmaCh03G004090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTATCCATATGCTTCTTACAACTATGGATATCCTTACCCTCACCAAGGATATCCCAAGAACCAAGCTTGTCCTCCTTATGGATACAATTATCATGGGCATGTGTATCCATATCCTCCTTATGGTTATCCTTATCAAGGATATCCATATGCTGCAGCAACAACAGTTCCTCCTCCTGTATATCATGGACAAAAGCATGGGCGAAAGGCAGGGAGGATCTTGACGTCCATGCTTTCGTCTGTGATTGGGAGTATCGGTGCTTCTTTCATCTCTTCCCTTCTTTTTGGGGTTTAG

mRNA sequence

ATGAATTATCCATATGCTTCTTACAACTATGGATATCCTTACCCTCACCAAGGATATCCCAAGAACCAAGCTTGTCCTCCTTATGGATACAATTATCATGGGCATGTGTATCCATATCCTCCTTATGGTTATCCTTATCAAGGATATCCATATGCTGCAGCAACAACAGTTCCTCCTCCTGTATATCATGGACAAAAGCATGGGCGAAAGGCAGGGAGGATCTTGACGTCCATGCTTTCGTCTGTGATTGGGAGTATCGGTGCTTCTTTCATCTCTTCCCTTCTTTTTGGGGTTTAG

Coding sequence (CDS)

ATGAATTATCCATATGCTTCTTACAACTATGGATATCCTTACCCTCACCAAGGATATCCCAAGAACCAAGCTTGTCCTCCTTATGGATACAATTATCATGGGCATGTGTATCCATATCCTCCTTATGGTTATCCTTATCAAGGATATCCATATGCTGCAGCAACAACAGTTCCTCCTCCTGTATATCATGGACAAAAGCATGGGCGAAAGGCAGGGAGGATCTTGACGTCCATGCTTTCGTCTGTGATTGGGAGTATCGGTGCTTCTTTCATCTCTTCCCTTCTTTTTGGGGTTTAG

Protein sequence

MNYPYASYNYGYPYPHQGYPKNQACPPYGYNYHGHVYPYPPYGYPYQGYPYAAATTVPPPVYHGQKHGRKAGRILTSMLSSVIGSIGASFISSLLFGV

Homology

[Close]

BLAST of CmaCh03G004090 vs. ExPASy TrEMBL
Match: A0A5A7TUH5 (Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00750 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 57/107 (53.27%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 1   MNYPYASYNYGYPYPHQGYPK--NQACPP---YGYNY----HGHVYPYPPYGYPYQGYPY 60
           MN PY  Y+YGYPYPHQGYPK   Q  PP   YG  Y    HGHV+PYP Y Y Y  YP 
Sbjct: 1   MNNPYGCYSYGYPYPHQGYPKYQGQGVPPNYKYGAGYINYGHGHVHPYPCYDYSYP-YPP 60

Query: 61  AAATTVPPPVYHGQKHGRKAGR-ILTSMLSSVIGSIG-ASFISSLLF 97
            + T +PP   + Q +G      IL SMLSSV G+   ASFISSL F
Sbjct: 61  PSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFF 106

[Close]

BLAST of CmaCh03G004090 vs. ExPASy TrEMBL
Match: A0A0A0KZN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-11
Identity = 59/111 (53.15%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 1   MNYPYASYNYGYPYPHQGYPK--NQACPP---YGYNY----HGHVYPYP--PYGYPYQGY 60
           MN PY  Y+YGYPYPHQGYPK   Q  PP   YG  Y    HGHV+PY    Y Y YQ Y
Sbjct: 1   MNNPYGHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQAY 60

Query: 61  PY-AAATTVPPPVYHGQKH--GRKAGRILTSMLSSVIGSIG-ASFISSLLF 97
           PY   +TT+ PP Y+ Q++      G IL SMLSSV G+   ASF+SSL F
Sbjct: 61  PYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFVSSLFF 111

[Close]

BLAST of CmaCh03G004090 vs. ExPASy TrEMBL
Match: A0A5A7TUG4 (Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00850 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 58/140 (41.43%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 1   MNYPYASYNYGYPYPH------------------------------------QGYPK--- 60
           MN PY  Y++GYPYPH                                    QGYPK   
Sbjct: 1   MNNPYGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYDA 60

Query: 61  --NQACPPYGYNYHGH--VYPYPPYGYPYQGYP-YAAATTVPPPVYHGQKHGRKAGRILT 97
              +A PP+  +YH +   YPYP     YQGYP Y A TT  PP +  Q   +K G  LT
Sbjct: 61  PTTKAPPPHQCSYHEYEDYYPYPSRN--YQGYPKYDAPTTKAPPSH--QYRPKKEGS-LT 120

[Close]

BLAST of CmaCh03G004090 vs. ExPASy TrEMBL
Match: A0A1S3BP00 (early nodulin-75-like OS=Cucumis melo OX=3656 GN=LOC103491729 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 58/140 (41.43%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 1   MNYPYASYNYGYPYPH------------------------------------QGYPK--- 60
           MN PY  Y++GYPYPH                                    QGYPK   
Sbjct: 1   MNNPYGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYDA 60

Query: 61  --NQACPPYGYNYHGH--VYPYPPYGYPYQGYP-YAAATTVPPPVYHGQKHGRKAGRILT 97
              +A PP+  +YH +   YPYP     YQGYP Y A TT  PP +  Q   +K G  LT
Sbjct: 61  PTTKAPPPHQCSYHEYEDYYPYPSRN--YQGYPKYDAPTTKAPPSH--QYRPKKEGS-LT 120

[Close]

BLAST of CmaCh03G004090 vs. ExPASy TrEMBL
Match: A0A0A0KXB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297410 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.7e-04
Identity = 49/97 (50.52%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 3   YPYAS-YNYGYPYPHQGYPKNQACPP-YGYNYHGHVYPYPPYGYPYQGYP-YAAATTVPP 62
           YP+ S  NY   YP    P  +A PP +  +YH +   YP     Y+GYP Y A TT  P
Sbjct: 50  YPHRSPCNYQGRYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAP 109

Query: 63  PVYHGQKHGRKAGRILTSMLSSVIGSIGASFISSLLF 97
           P    Q  G+K  R LTSM SSV GSIGASFISSLLF
Sbjct: 110 P--PPQSKGKKNCRALTSMASSVAGSIGASFISSLLF 144

[Close]

BLAST of CmaCh03G004090 vs. NCBI nr
Match: KAA0045171.1 (early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11
Identity = 57/107 (53.27%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 1   MNYPYASYNYGYPYPHQGYPK--NQACPP---YGYNY----HGHVYPYPPYGYPYQGYPY 60
           MN PY  Y+YGYPYPHQGYPK   Q  PP   YG  Y    HGHV+PYP Y Y Y  YP 
Sbjct: 1   MNNPYGCYSYGYPYPHQGYPKYQGQGVPPNYKYGAGYINYGHGHVHPYPCYDYSYP-YPP 60

Query: 61  AAATTVPPPVYHGQKHGRKAGR-ILTSMLSSVIGSIG-ASFISSLLF 97
            + T +PP   + Q +G      IL SMLSSV G+   ASFISSL F
Sbjct: 61  PSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFF 106

[Close]

BLAST of CmaCh03G004090 vs. NCBI nr
Match: KAE8649545.1 (hypothetical protein Csa_017919 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-09
Identity = 55/106 (51.89%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 1   MNYPYASYNYGYPYPHQGYPK--NQACPP---YGYNY----HGHVYPYP--PYGYPYQGY 60
           MN PY  Y+YGYPYPHQGYPK   Q  PP   YG  Y    HGHV+PY    Y Y YQ Y
Sbjct: 1   MNNPYGHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQAY 60

Query: 61  PY-AAATTVPPPVYHGQKH--GRKAGRILTSMLSSVIGSIG-ASFI 92
           PY   +TT+ PP Y+ Q++      G IL SMLSSV G+   ASF+
Sbjct: 61  PYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFV 106

[Close]

BLAST of CmaCh03G004090 vs. NCBI nr
Match: XP_008450016.1 (PREDICTED: early nodulin-75-like [Cucumis melo] >KAA0045161.1 early nodulin-75-like [Cucumis melo var. makuwa] >TYK23577.1 early nodulin-75-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-06
Identity = 58/140 (41.43%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 1   MNYPYASYNYGYPYPH------------------------------------QGYPK--- 60
           MN PY  Y++GYPYPH                                    QGYPK   
Sbjct: 1   MNNPYGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYDA 60

Query: 61  --NQACPPYGYNYHGH--VYPYPPYGYPYQGYP-YAAATTVPPPVYHGQKHGRKAGRILT 97
              +A PP+  +YH +   YPYP     YQGYP Y A TT  PP +  Q   +K G  LT
Sbjct: 61  PTTKAPPPHQCSYHEYEDYYPYPSRN--YQGYPKYDAPTTKAPPSH--QYRPKKEGS-LT 120

The following BLAST results are available for this feature:

BLAST of CmaCh03G004090 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G004090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUH5	2.2e-11	53.27	Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A0A0KZN9	4.8e-11	53.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1	[more]
A0A5A7TUG4	4.6e-06	41.43	Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A1S3BP00	4.6e-06	41.43	early nodulin-75-like OS=Cucumis melo OX=3656 GN=LOC103491729 PE=4 SV=1	[more]
A0A0A0KXB0	5.7e-04	50.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297410 PE=4 SV=1	[more]

BLAST of CmaCh03G004090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045171.1	4.4e-11	53.27	early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-li...	[more]
KAE8649545.1	5.4e-09	51.89	hypothetical protein Csa_017919 [Cucumis sativus]	[more]
XP_008450016.1	9.6e-06	41.43	PREDICTED: early nodulin-75-like [Cucumis melo] >KAA0045161.1 early nodulin-75-l...	[more]

BLAST of CmaCh03G004090 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G004090.1	CmaCh03G004090.1	mRNA