CmaCh03G003270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G003270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit omega
Location	Cma_Chr03: 4058836 .. 4059869 (+)
RNA-Seq Expression	CmaCh03G003270
Synteny	CmaCh03G003270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCAAGTTCGTAGGTTTAAGGGACAAAGACCTGTCCTCTTGCAAGATTCTTATGGTGTCATTTGATGGATAAATGTTCTCGTTCATATAAGATTATATCATATATTGTCCGTTTTAGTTCATTACGTATCACTGTCAGCTTCATAATTTTAAACATATTTTTATATCGACATCATTAAAGTTTTAGTGGGATGATTTTTACGAAAATATCTCGATCCCCTCCAATTTCTCGAACCCTACTGACCTAAAACTCCTCCCCACATCTTTTGTGGATGAACTCTCGAAGAAACTTGTTTTCCAAGCTACACTCCACGCTACCCCAAATATTCTCATTCTCTCCTCCCTATAAATTTTAGGAATATACCTTTTTGCCCGATTTGAATCATAAAATGGGTTGCATCATTTGCTATTTCGAAGGTTGATAATTGGAGATACGTACTAAACTATAATGCATATATTTAAAATTAGTGTCAAATAAAACAATCTCACAAATTCTAAAGGCTCACGGTGGCGCCGCTCGGCTCCGGCGGGACAAGTTCTCGGCGACCTGAGTCAGTGACTGAAGGTTGCAACGGACGATGGTGTCGACGAACACACACGTGTCCTCCTTGGTGTTTCCTGGCGGAATATCGACAACGTACGATTCCACCACGAGGGTGCCGTCGATGGCAGAGTGGAGGGATGTAACGGACCGGTAGTTAGCGAGCCGGTGTTCGCCTCCGACGACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCGAGTCGTTCGGTGCTATTGGCAGCTGGAAGGCCGGAAACGACGTGAACTTCACGGAGACTACCTACGTTGCCATCTCCGACGATGACGTCACAACTCTTGACGAAGTGTTTGTAGGCTTGTGGGTTGTCGAAGCGGCGGAGGACAGACCACACGGTGGAGACCGGAGCGTCGATCTCTACAACGATGGCGGAGCAGCACTGGTTCGAATCCGTAGCGTGGTTGTGGAAACGCGCTACCGCGTCGGGGACCGTGGTAGCGCGTGA

mRNA sequence

ATGTCTTCAAGTTCGCTCACGGTGGCGCCGCTCGGCTCCGGCGGGACAAGTTCTCGGCGACCTGAGTCAGTTGCAACGGACGATGGTGTCGACGAACACACACGTGTCCTCCTTGGTGTTTCCTGGCGGAATATCGACAACGTACGATTCCACCACGAGGGTGCCGTCGATGGCAGAGTGGAGGGATGTAACGGACCGGTAGTTAGCGAGCCGGTGTTCGCCTCCGACGACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCGAGTCGTTCGGTGCTATTGGCAGCTGGAAGGCCGGAAACGACGTGAACTTCACGGAGACTACCTACGTTGCCATCTCCGACGATGACGTCACAACTCTTGACGAAGTGTTTGTAGGCTTGTGGGTTGTCGAAGCGGCGGAGGACAGACCACACGGTGGAGACCGGAGCGTCGATCTCTACAACGATGGCGGAGCAGCACTGGTTCGAATCCGTAGCGTGGTTGTGGAAACGCGCTACCGCGTCGGGGACCGTGGTAGCGCGTGA

Coding sequence (CDS)

ATGTCTTCAAGTTCGCTCACGGTGGCGCCGCTCGGCTCCGGCGGGACAAGTTCTCGGCGACCTGAGTCAGTTGCAACGGACGATGGTGTCGACGAACACACACGTGTCCTCCTTGGTGTTTCCTGGCGGAATATCGACAACGTACGATTCCACCACGAGGGTGCCGTCGATGGCAGAGTGGAGGGATGTAACGGACCGGTAGTTAGCGAGCCGGTGTTCGCCTCCGACGACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCGAGTCGTTCGGTGCTATTGGCAGCTGGAAGGCCGGAAACGACGTGAACTTCACGGAGACTACCTACGTTGCCATCTCCGACGATGACGTCACAACTCTTGACGAAGTGTTTGTAGGCTTGTGGGTTGTCGAAGCGGCGGAGGACAGACCACACGGTGGAGACCGGAGCGTCGATCTCTACAACGATGGCGGAGCAGCACTGGTTCGAATCCGTAGCGTGGTTGTGGAAACGCGCTACCGCGTCGGGGACCGTGGTAGCGCGTGA

Protein sequence

MSSSSLTVAPLGSGGTSSRRPESVATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAVDGRVEGCNGPVVSEPVFASDDTEANNMAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPHGGDRSVDLYNDGGAALVRIRSVVVETRYRVGDRGSA

Homology

[Close]

BLAST of CmaCh03G003270 vs. ExPASy TrEMBL
Match: A0A5N5JL98 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024397 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 79/154 (51.30%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAV--DGRVEGCNGPVVSEPVFASDDTEAN 83
           VA + G+ EHTRVL  +SWRNID VR H +GAV   GRVEGC+  VV +PV  ++DT+ N
Sbjct: 50  VAPNYGIHEHTRVLFSISWRNIDRVRLHDDGAVPSGGRVEGCDRLVVRKPVVPTNDTKTN 109

Query: 84  NMAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPH 143
           +M+F+VE+LE+FGA+GSW+A ++++FTE+ +V +S+DDV  LDE+ + L V+E A DRP+
Sbjct: 110 DMSFIVEDLEAFGAVGSWEARDNMDFTESAHVTVSEDDVAALDEMLISLRVIEPANDRPY 169

Query: 144 GGDRSVDLYNDGGAALVRIRSVVVETRYRVGDRG 176
           GGD   DL    GAALV    V V  R+ + + G
Sbjct: 170 GGDWGSDLLYHRGAALVGANGVGVVARHGLWNWG 203

[Close]

BLAST of CmaCh03G003270 vs. ExPASy TrEMBL
Match: A0A0S3RUD5 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G129500 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 79/152 (51.97%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAVDG-RVEGCNGPVVSEPVFASDDTEANN 83
           VA +DG+DEH RV+ GV+  +I +V    +GA  G RVEGC+G VV E V A+D  EAN+
Sbjct: 20  VAAEDGIDEHARVVGGVAGWDIHDVGLDDDGARGGARVEGCDGAVVGEAVIAADHAEAND 79

Query: 84  MAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPHG 143
           +A VVE++E+ GA G  +AG+  +  E   VA+S DDV  L EV VGLWVVEA    PHG
Sbjct: 80  VALVVEDVEALGADGGREAGDHAHLAERADVAVSQDDVAALHEVLVGLWVVEAPHHGPHG 139

Query: 144 GDRSVDLYNDGGAALVRIRSVVVETRYRVGDR 175
           GDR  DL + GGAALVR   V V   + V DR
Sbjct: 140 GDRRRDLLHHGGAALVRGHRVDVVAGHHVWDR 171

[Close]

BLAST of CmaCh03G003270 vs. ExPASy TrEMBL
Match: V7B6X3 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G093500g PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 76/153 (49.67%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAVDGR-VEGCNGPVVSEPVFASDDTEANN 83
           VA +DG+DEH RV+ GV+ R++ +V  H +GA  G  VEGC+G VV E V A+D  EAN+
Sbjct: 19  VAAEDGIDEHARVVGGVAGRDVHDVGLHDDGARGGAGVEGCDGAVVGETVIAADHAEAND 78

Query: 84  MAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPHG 143
           +A VV+++E+ GA G  +AG+  +  E  ++A++ DDV  L EV VGL VVEA    PHG
Sbjct: 79  VALVVQDVEALGADGGREAGDHAHLPERAHIAVAQDDVAALHEVLVGLRVVEAPHHGPHG 138

Query: 144 GDRSVDLYNDGGAALVRIRSVVVETRYRVGDRG 176
           GD   DL ++GGAALVR   V V   +RVGD G
Sbjct: 139 GDGRRDLLHNGGAALVRRHRVDVVACHRVGDGG 171

[Close]

BLAST of CmaCh03G003270 vs. ExPASy TrEMBL
Match: A0A2Z6NJ47 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_161620 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 70/144 (48.61%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHE--GAV-------DGRVEGCNGPVVSEPVFA 83
           +A  +G++++T ++ GVS RNI++VRF++   GAV         R++ CN  VVS+PV A
Sbjct: 24  IAPKNGINKNTSIISGVSRRNINDVRFNNNRTGAVVTIGVRDRTRMKSCNRTVVSKPVIA 83

Query: 84  SDDTEANNMAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVE 143
           +D  E +++AF+VEN E+FGA G  +AGND NFTE+ YV +++D+V   D+VF+GLW+VE
Sbjct: 84  TDHAETDDVAFIVENFETFGADGGGEAGNDANFTESAYVTVAEDEVAAFDKVFIGLWIVE 143

Query: 144 AAEDRPHGGDRSVDLYNDGGAALV 159
           A +D P GGDRS D  + GGA LV
Sbjct: 144 ATDDGPDGGDRSGDFLDYGGATLV 167

[Close]

BLAST of CmaCh03G003270 vs. ExPASy TrEMBL
Match: A0A2K3K7F7 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g052862 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 71/144 (49.31%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHE--GAV-------DGRVEGCNGPVVSEPVFA 83
           +A  +G++++T ++ GVS RNI++VRF++   GAV         R++  +  VV EPV A
Sbjct: 23  IAPKNGINKNTSIISGVSRRNINDVRFNNNRTGAVVTVGIGDRTRMKSGDRTVVREPVIA 82

Query: 84  SDDTEANNMAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVE 143
           +D  EA+++AF+VE+ ESFGA G  + G+D NFTE+ YV++++DDV T D+VFVGLW+VE
Sbjct: 83  ADHAEADDVAFIVEDFESFGADGGGETGDDTNFTESAYVSVAEDDVATFDKVFVGLWIVE 142

Query: 144 AAEDRPHGGDRSVDLYNDGGAALV 159
           A +D P GGDRS D  +DGGA LV
Sbjct: 143 ATDDGPDGGDRSGDFLDDGGATLV 166

[Close]

BLAST of CmaCh03G003270 vs. NCBI nr
Match: KAG6603563.1 (hypothetical protein SDJN03_04172, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 142/154 (92.21%), Postives = 144/154 (93.51%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAVDGRVEGCNGPVVSEPVFASDDTEANNM 83
           VATDDGVDEH RVLLGVSWRNIDNVRFHH+GAVDGRVEGCNGPVVSE VFASDD EANNM
Sbjct: 24  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGRVEGCNGPVVSEAVFASDDAEANNM 83

Query: 84  AFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPHGG 143
           AFVVENLES GAIGSWKAGND NFTET YVAISDDDVT  DEVFVGLWVVEAAED PHGG
Sbjct: 84  AFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTAFDEVFVGLWVVEAAEDGPHGG 143

Query: 144 DRSVDLYNDGGAALVRIRSVVVETRYRVGDRGSA 178
           DRSVDL NDGGAALVRIRSVVVETR+RVGDRGSA
Sbjct: 144 DRSVDLLNDGGAALVRIRSVVVETRHRVGDRGSA 177

[Close]

BLAST of CmaCh03G003270 vs. NCBI nr
Match: KAB5520078.1 (hypothetical protein DKX38_024397 [Salix brachista])

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-35
Identity = 79/154 (51.30%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAV--DGRVEGCNGPVVSEPVFASDDTEAN 83
           VA + G+ EHTRVL  +SWRNID VR H +GAV   GRVEGC+  VV +PV  ++DT+ N
Sbjct: 50  VAPNYGIHEHTRVLFSISWRNIDRVRLHDDGAVPSGGRVEGCDRLVVRKPVVPTNDTKTN 109

Query: 84  NMAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPH 143
           +M+F+VE+LE+FGA+GSW+A ++++FTE+ +V +S+DDV  LDE+ + L V+E A DRP+
Sbjct: 110 DMSFIVEDLEAFGAVGSWEARDNMDFTESAHVTVSEDDVAALDEMLISLRVIEPANDRPY 169

Query: 144 GGDRSVDLYNDGGAALVRIRSVVVETRYRVGDRG 176
           GGD   DL    GAALV    V V  R+ + + G
Sbjct: 170 GGDWGSDLLYHRGAALVGANGVGVVARHGLWNWG 203

[Close]

BLAST of CmaCh03G003270 vs. NCBI nr
Match: KAF9665277.1 (hypothetical protein SADUNF_Sadunf16G0105900 [Salix dunnii])

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-34
Identity = 81/155 (52.26%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 23  SVATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAVDG--RVEGCNGPVVSEPVFASDDTEA 82
           SVA + G+ EHTRVL  +SWRNID VR H +GAV    RVE C+  VV EPV  +D+ + 
Sbjct: 38  SVAPNYGIHEHTRVLFSISWRNIDRVRLHDDGAVPSGRRVESCDRLVVREPVVPTDNAKT 97

Query: 83  NNMAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRP 142
           N+M+F+VE+LE+FGA+GSW+A  +V+FTE+ +V +S+DDV  LDE+ V L V+E A DRP
Sbjct: 98  NDMSFIVEDLEAFGAVGSWEARYNVDFTESAHVTVSEDDVAALDEMLVSLRVIEPANDRP 157

Query: 143 HGGDRSVDLYNDGGAALVRIRSVVVETRYRVGDRG 176
           +GGD   DL     AALV   SV VE R+ + + G
Sbjct: 158 YGGDWGSDLLYHRRAALVGANSVGVEARHGLWNWG 192

[Close]

BLAST of CmaCh03G003270 vs. NCBI nr
Match: XP_007140212.1 (hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris] >ESW12206.1 hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris])

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-30
Identity = 76/153 (49.67%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAVDGR-VEGCNGPVVSEPVFASDDTEANN 83
           VA +DG+DEH RV+ GV+ R++ +V  H +GA  G  VEGC+G VV E V A+D  EAN+
Sbjct: 19  VAAEDGIDEHARVVGGVAGRDVHDVGLHDDGARGGAGVEGCDGAVVGETVIAADHAEAND 78

Query: 84  MAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPHG 143
           +A VV+++E+ GA G  +AG+  +  E  ++A++ DDV  L EV VGL VVEA    PHG
Sbjct: 79  VALVVQDVEALGADGGREAGDHAHLPERAHIAVAQDDVAALHEVLVGLRVVEAPHHGPHG 138

Query: 144 GDRSVDLYNDGGAALVRIRSVVVETRYRVGDRG 176
           GD   DL ++GGAALVR   V V   +RVGD G
Sbjct: 139 GDGRRDLLHNGGAALVRRHRVDVVACHRVGDGG 171

[Close]

BLAST of CmaCh03G003270 vs. NCBI nr
Match: KAG2404602.1 (uncharacterized protein HKW66_Vig0115240 [Vigna angularis] >BAT84031.1 hypothetical protein VIGAN_04129500 [Vigna angularis var. angularis])

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-30
Identity = 79/152 (51.97%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 24  VATDDGVDEHTRVLLGVSWRNIDNVRFHHEGAVDG-RVEGCNGPVVSEPVFASDDTEANN 83
           VA +DG+DEH RV+ GV+  +I +V    +GA  G RVEGC+G VV E V A+D  EAN+
Sbjct: 20  VAAEDGIDEHARVVGGVAGWDIHDVGLDDDGARGGARVEGCDGAVVGEAVIAADHAEAND 79

Query: 84  MAFVVENLESFGAIGSWKAGNDVNFTETTYVAISDDDVTTLDEVFVGLWVVEAAEDRPHG 143
           +A VVE++E+ GA G  +AG+  +  E   VA+S DDV  L EV VGLWVVEA    PHG
Sbjct: 80  VALVVEDVEALGADGGREAGDHAHLAERADVAVSQDDVAALHEVLVGLWVVEAPHHGPHG 139

Query: 144 GDRSVDLYNDGGAALVRIRSVVVETRYRVGDR 175
           GDR  DL + GGAALVR   V V   + V DR
Sbjct: 140 GDRRRDLLHHGGAALVRGHRVDVVAGHHVWDR 171

The following BLAST results are available for this feature:

BLAST of CmaCh03G003270 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G003270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5JL98	1.3e-35	51.30	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024397 PE=4 SV=1	[more]
A0A0S3RUD5	2.2e-30	51.97	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G...	[more]
V7B6X3	2.2e-30	49.67	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G093500g PE=4 ...	[more]
A0A2Z6NJ47	2.9e-30	48.61	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_161620 PE=4 SV...	[more]
A0A2K3K7F7	1.1e-29	49.31	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g052862 PE=4 SV=1	[more]

BLAST of CmaCh03G003270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603563.1	1.0e-74	92.21	hypothetical protein SDJN03_04172, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB5520078.1	2.7e-35	51.30	hypothetical protein DKX38_024397 [Salix brachista]	[more]
KAF9665277.1	1.0e-34	52.26	hypothetical protein SADUNF_Sadunf16G0105900 [Salix dunnii]	[more]
XP_007140212.1	4.5e-30	49.67	hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris] >ESW12206.1 hypothet...	[more]
KAG2404602.1	4.5e-30	51.97	uncharacterized protein HKW66_Vig0115240 [Vigna angularis] >BAT84031.1 hypotheti...	[more]

BLAST of CmaCh03G003270 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G003270.1	CmaCh03G003270.1	mRNA