CmaCh03G002330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G002330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Transmembrane protein 18
Location	Cma_Chr03: 3455962 .. 3458185 (-)
RNA-Seq Expression	CmaCh03G002330
Synteny	CmaCh03G002330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCCATTGACTGGAAGGTAAAATTCAATCAAAATCCGTTCAGAACTCTCATTGGATCTGATGTGTGAATTTAAATATTATTTTTATGTATTTTTTTGTTTAATTTTGCAGGAACCTTGGTTGATGGGGTTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACGTATGATTTTTTCTTTTATTTGCTCATTATTCATTTATATCTTTCTGAAATGTATTAGCATTGTTCATGGATGTGCAATATTGAGATGTTTGATTGCTGTTCATATTGCATCCACTGTACTGGCAAAATAGTGAGTTCTAGTCTAGGAATCTAGGTTTGAAAACTTCACTACGCTCAGATATGAATTCTGAGGTTCAAATATCCTTTTGCAAATGATTTGCTGCATCAAGGCTGCAATCATAGATAATTACATTTGCAGATTGGAATTAAAGTCGGTGATCGATGTTTATGATTTCCAACCATAAAGCTTTTTTGATGCTTGTATTCATGACTGTGGATACAATCCATATTCACATTTTGCATGTTGATGTGTACGTATTCATGTATTTCTTAATTGCTGGTCCTTTCATTCTAGGAGAATACCCTTTTTGCATTTGTAACGGCTCAAACCCACCACTTGCAGATGTTATCCTCTTTGGGTTTTTCCTTTCGAGATTTCTCTCAAGGTTTTTAAAATGCGTATGCTAGGGAGAGGTTTCCACATCCTTATAAAAAAATGCTTCATTCTCCTCTCAACCAAAGTGGGATCTCACAATCCACCCCCCTTCGGGGCCCAACGTCTTCGCTACCACTCGTTCCCTTCTCCAATCGATGTGGGACTCCCTAATCCACCCCCCTTCAGGGCCCAACGTCCTTGCTGGCACATCGCCTCGTGTCCACCCCCTTCAGGGTTCAGCTTCCTCGCTGGCATATCATTTGGTGTACACCCCCTTTGGGGCTCAACATCCTCGCCGGCACACCGCCCGATGTCTGGCTCTGATGCCATTTGTAACGTCCCAAACCCATTGCAAGCAAAGATTGTCCTAAAAAATGTTCATTTTCTTTTTATTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTATTTATAAGGGTGTGGAAACTTCTCCCTAGCAGACACGTTTTAAAAAACGTTGAGAGAAAGCTTGAAAGGGAAATTCCAAAAATAGTAATATCTGCTAGCAGTGGGTTTAGGCTGTTATTGCATTCTACAAAAACCCTTAAAACCCCTTTCATGTTTGTTATACATTTTCCTATGTTCACAATCATATTTTGCAAGTTTATATGCACATGTTTTTTCATAGATTTCTCGGTGGGTTTAGGCTATTATAGCATTCTACAAAAACCCTTAAAAACCCTTTCATGTTTGTTATACATTTTTCTATGTTCACAATCATATTTTGCAAGTCTATATGCACATTTTTTTTCATGGATTTCTCGGTGGGTTTAGGCTATTACAGCATTCTACAAAAACCCTTTCATGTTTGTTGTACATTTTCCTATGTTCACAATCATATTTTGCAAGTCTATATGCACATTTTTTTTCATGGATTTCTCAACTCCAATTGTTCTTCATTTCAAGTACAAGAAATCCTTATTTGGAGTACTTACATACTTGTATTTGTAATGCAGTAGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCGTAATTTCAATGATAATTCTGGCAAGTACTCGTTATTACTTCTTTTCCTCATGTCCCGGATGAACAACCCCATACTATCCAATTGCCCCATCACATTGAAGGATTATTTCTCTGTCATTTGTTTATTGTCTAGTTTTCCACGTCAAGAACACTTAACTGAACTCTCATTTCTGTATGGCAGATAAACACACTTTTTACCTTGTGCTATCTCGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAA

mRNA sequence

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACTAGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCGTAATTTCAATGATAATTCTGATAAACACACTTTTTACCTTGTGCTATCTCGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAA

Coding sequence (CDS)

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACTAGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCGTAATTTCAATGATAATTCTGATAAACACACTTTTTACCTTGTGCTATCTCGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAA

Protein sequence

MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED

Homology

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BLAST of CmaCh03G002330 vs. ExPASy Swiss-Prot
Match: Q5F410 (Transmembrane protein 18 OS=Gallus gallus OX=9031 GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-17
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWL+GL GFH L  ++T F+ +H   Q+  FL  +  VY AE IN + + NW+ F+
Sbjct: 26  DWAEPWLLGLAGFHVLCFLLTCFSFQHYRVQIGHFLCMVCLVYCAEYINELAAMNWRLFS 85

Query: 105 TQNYFDPNGVFLSTLWSGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTK 162
              YFD  G+F+S ++S PLLV ++II++N ++    ++   K  + R +A   + K
Sbjct: 86  KYQYFDSRGMFISLVFSAPLLVNTIIIVVNWVYRTLNVMTELKTLQQRIKAEKDKKK 142

[Close]

BLAST of CmaCh03G002330 vs. ExPASy Swiss-Prot
Match: Q96B42 (Transmembrane protein 18 OS=Homo sapiens OX=9606 GN=TMEM18 PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-16
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWLMGL  FH L +++T  + +    Q+  FL  +  VY AE IN   + NW+ F+
Sbjct: 22  DWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 81

Query: 105 TQNYFDPNGVFLSTLWSGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
              YFD  G+F+S ++S PLLV +MII++  ++    ++   K A+ R + +  + KED
Sbjct: 82  KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKKRRRKED 140

[Close]

BLAST of CmaCh03G002330 vs. ExPASy Swiss-Prot
Match: Q6DGF8 (Transmembrane protein 18 OS=Rattus norvegicus OX=10116 GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-16
Identity = 46/119 (38.66%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWL+GLL FH L L++T F+ +    Q+  FL  +  VY AE IN + + NW+ FA
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFA 81

Query: 105 TQNYFDPNGVFLSTLWSGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
              YFD  G+F+S ++S PLL  +M+I+I  +     ++   K  + R + R  + KE+
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAMVIVIMWVRKTLTVMSDLKNLQERRKERKRRRKEE 140

[Close]

BLAST of CmaCh03G002330 vs. ExPASy Swiss-Prot
Match: Q3SZ36 (Transmembrane protein 18 OS=Bos taurus OX=9913 GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWL+GL GFH L L++T F+ +    Q+  FL  +  VY AE IN + + NW+ F+
Sbjct: 22  DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFS 81

Query: 105 TQNYFDPNGVFLSTLWSGPLLVISMIILINTLFTLCYLVVRWKRAELRNRAR 157
              YFD  G+F+S ++S PLL+ +++I++  L+    LVV      LR + R
Sbjct: 82  KHQYFDSRGMFISLVFSAPLLLNALVIVV--LWVRKTLVVMTDLRSLREQRR 131

[Close]

BLAST of CmaCh03G002330 vs. ExPASy Swiss-Prot
Match: Q641M3 (Transmembrane protein 18 OS=Danio rerio OX=7955 GN=tmem18 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 0


Query: 40  FFHAIDWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKN 99
           F  ++DW EPWLM LL FH      T+ + K+   Q+  FLL +A VY AE +N + + N
Sbjct: 28  FLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLNELAAMN 87

Query: 100 WKNFATQNYFDPNGVFLSTLWSGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQ 159
           W++F+   YFD  G+F+S ++S PLL+ ++II+   ++     +   K  +L+ +A    
Sbjct: 88  WRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIVAVWVWRTFSTMTELKILQLKRKAAREN 147

Query: 160 TKE 163
            K+
Sbjct: 148 HKK 150

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BLAST of CmaCh03G002330 vs. ExPASy TrEMBL
Match: A0A6J1ISM9 (Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.2e-85
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 163

[Close]

BLAST of CmaCh03G002330 vs. ExPASy TrEMBL
Match: A0A6J1GD63 (Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.2e-85
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 163

[Close]

BLAST of CmaCh03G002330 vs. ExPASy TrEMBL
Match: A0A0A0LN62 (Transmembrane protein 18 OS=Cucumis sativus OX=3659 GN=Csa_2G431140 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 152/163 (93.25%), Postives = 158/163 (96.93%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFLLALAGVYFAE IN ILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVISMIILINTLFTLCYLVVRWKRAELR+RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of CmaCh03G002330 vs. ExPASy TrEMBL
Match: A0A5A7VF36 (Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001270 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.9e-79
Identity = 150/163 (92.02%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRSAMEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSAMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFL ALAGVYFAE IN+ILSKNWK FATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLFALAGVYFAEGINKILSKNWKKFATQNYFDPNGVFLSALW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
            GPLLVISMIILINTLFTLCYLVVRWKRAELR+RARLSQ+KED
Sbjct: 121 CGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of CmaCh03G002330 vs. ExPASy TrEMBL
Match: A0A6J1DPY2 (Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.9e-79
Identity = 152/163 (93.25%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNFIGFFHAI WKEPWLMGLLGFH L
Sbjct: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFIGFFHAIGWKEPWLMGLLGFHAL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITI TRK TNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIVTRKRTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVISMIILINTL TLC+LVVRWKRAEL++RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLLTLCFLVVRWKRAELQHRARLSQSKED 163

[Close]

BLAST of CmaCh03G002330 vs. NCBI nr
Match: XP_022949841.1 (transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane protein 18 [Cucurbita maxima] >KAG6603481.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.7 bits (831), Expect = 4.5e-85
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 163

[Close]

BLAST of CmaCh03G002330 vs. NCBI nr
Match: XP_023543279.1 (transmembrane protein 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.5 bits (820), Expect = 8.6e-84
Identity = 160/163 (98.16%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWL+GLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLIGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLL+ISMIILINTLFTLCYLVVRWKRAELRNRARLSQ+KED
Sbjct: 121 SGPLLLISMIILINTLFTLCYLVVRWKRAELRNRARLSQSKED 163

[Close]

BLAST of CmaCh03G002330 vs. NCBI nr
Match: XP_038900756.1 (transmembrane protein 18 [Benincasa hispida])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 154/163 (94.48%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADL+QK+SSELRSG+RPAVDNF+GFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLIQKISSELRSGIRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVISMIILINTLFTLC+LVVRWKRAELR+RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLFTLCFLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of CmaCh03G002330 vs. NCBI nr
Match: KAG7033663.1 (Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.1 bits (788), Expect = 4.4e-80
Identity = 156/163 (95.71%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPL       LINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 156

[Close]

BLAST of CmaCh03G002330 vs. NCBI nr
Match: XP_011650049.1 (transmembrane protein 18 [Cucumis sativus] >KGN63345.1 hypothetical protein Csa_021882 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 3.7e-79
Identity = 152/163 (93.25%), Postives = 158/163 (96.93%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFLLALAGVYFAE IN ILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVISMIILINTLFTLCYLVVRWKRAELR+RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of CmaCh03G002330 vs. TAIR 10
Match: AT1G34350.1 (unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). )

HSP 1 Score: 262.3 bits (669), Expect = 2.6e-70
Identity = 123/163 (75.46%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+ FH L
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LL++T+ +R+H NF MFLFLLALAGVYFAE +NR L KNWK+F+TQNYFD NGVFLSTLW
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRELRKNWKSFSTQNYFDSNGVFLSTLW 120

Query: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 164
           SGPLLVI+MIILINTLF+LCYL+V+WKRAELR+RARL+ TKE+
Sbjct: 121 SGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRARLAHTKEE 163

[Close]

BLAST of CmaCh03G002330 vs. TAIR 10
Match: AT1G34350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 247.3 bits (630), Expect = 8.6e-66
Identity = 122/188 (64.89%), Postives = 148/188 (78.72%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+ FH L
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLA-------------------------LAGVYFAERINRI 120
           LL++T+ +R+H NF MFLFLLA                         +AGVYFAE +NR 
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLACKFPLKLSIYILYKKSLRSNDLTSLVAGVYFAENLNRE 120

Query: 121 LSKNWKNFATQNYFDPNGVFLSTLWSGPLLVISMIILINTLFTLCYLVVRWKRAELRNRA 164
           L KNWK+F+TQNYFD NGVFLSTLWSGPLLVI+MIILINTLF+LCYL+V+WKRAELR+RA
Sbjct: 121 LRKNWKSFSTQNYFDSNGVFLSTLWSGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRA 180

The following BLAST results are available for this feature:

BLAST of CmaCh03G002330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5F410	4.2e-17	38.46	Transmembrane protein 18 OS=Gallus gallus OX=9031 GN=TMEM18 PE=2 SV=1	[more]
Q96B42	4.6e-16	37.82	Transmembrane protein 18 OS=Homo sapiens OX=9606 GN=TMEM18 PE=1 SV=2	[more]
Q6DGF8	4.6e-16	38.66	Transmembrane protein 18 OS=Rattus norvegicus OX=10116 GN=Tmem18 PE=2 SV=1	[more]
Q3SZ36	3.0e-15	40.18	Transmembrane protein 18 OS=Bos taurus OX=9913 GN=TMEM18 PE=2 SV=1	[more]
Q641M3	3.0e-15	34.96	Transmembrane protein 18 OS=Danio rerio OX=7955 GN=tmem18 PE=2 SV=1	[more]

BLAST of CmaCh03G002330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ISM9	2.2e-85	100.00	Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1	[more]
A0A6J1GD63	2.2e-85	100.00	Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1	[more]
A0A0A0LN62	1.8e-79	93.25	Transmembrane protein 18 OS=Cucumis sativus OX=3659 GN=Csa_2G431140 PE=3 SV=1	[more]
A0A5A7VF36	8.9e-79	92.02	Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1DPY2	8.9e-79	93.25	Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=...	[more]

BLAST of CmaCh03G002330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949841.1	4.5e-85	100.00	transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane prot...	[more]
XP_023543279.1	8.6e-84	98.16	transmembrane protein 18 [Cucurbita pepo subsp. pepo]	[more]
XP_038900756.1	2.3e-81	94.48	transmembrane protein 18 [Benincasa hispida]	[more]
KAG7033663.1	4.4e-80	95.71	Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_011650049.1	3.7e-79	93.25	transmembrane protein 18 [Cucumis sativus] >KGN63345.1 hypothetical protein Csa_...	[more]

BLAST of CmaCh03G002330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34350.1	2.6e-70	75.46	unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; B...	[more]
AT1G34350.2	8.6e-66	64.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	PANTHER	PTHR22593:SF2	TRANSMEMBRANE PROTEIN 18	coord: 1..160
None	No IPR available	PANTHER	PTHR22593	TRANSMEMBRANE PROTEIN 18	coord: 1..160
IPR026721	Transmembrane protein 18	PFAM	PF14770	TMEM18	coord: 39..156 e-value: 2.0E-45 score: 153.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G002330.1	CmaCh03G002330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0052543	callose deposition in cell wall
biological_process	GO:0009846	pollen germination
biological_process	GO:0009860	pollen tube growth
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005640	nuclear outer membrane