CmaCh03G001330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G001330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	auxin-regulated gene involved in organ size
Location	Cma_Chr03: 1579635 .. 1579956 (+)
RNA-Seq Expression	CmaCh03G001330
Synteny	CmaCh03G001330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTGACGGTGGCAGCGGCGGCGGCGGCGGAGTTTGATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTACCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGTTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCTGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGTGGTCACGATTCTGCTTGA

mRNA sequence

ATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTGACGGTGGCAGCGGCGGCGGCGGCGGAGTTTGATGCGTCTCTTTTGATATTACCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGTTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCTGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGTGGTCACGATTCTGCTTGA

Coding sequence (CDS)

ATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTGACGGTGGCAGCGGCGGCGGCGGCGGAGTTTGATGCGTCTCTTTTGATATTACCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGTTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCTGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGTGGTCACGATTCTGCTTGA

Protein sequence

MHEENIQLGHFRIQLTVVVTVAAAAAAEFDASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA

Homology

[Close]

BLAST of CmaCh03G001330 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 31  ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA 90
           ASL+ILPLVLPPLPPPP +L+ VPV ++  LL LA  P+   +     G  GGGG + A
Sbjct: 113 ASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPT-TTSSSSSAGGGGGGGRNGA 170

[Close]

BLAST of CmaCh03G001330 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 5.9e-05
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 31  ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 70
           ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  PS
Sbjct: 85  ASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of CmaCh03G001330 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 31  ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 70
           ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  PS
Sbjct: 78  ASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of CmaCh03G001330 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 31  ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 70
           ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 84  ASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CmaCh03G001330 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 33 LLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPA 74
          LLILP  LPPLPPPP  LL +P+L+M  L+FLA SPS  P+
Sbjct: 40 LLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of CmaCh03G001330 vs. ExPASy TrEMBL
Match: A0A5A7SII5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003090 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-12
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 32 SLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA 90
          SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  GG++SA
Sbjct: 8  SLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDSDGGYNSA 64

[Close]

BLAST of CmaCh03G001330 vs. ExPASy TrEMBL
Match: A0A5D3BWW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00300 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 32 SLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA 90
          SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  GG +SA
Sbjct: 8  SLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDCDGGFNSA 64

[Close]

BLAST of CmaCh03G001330 vs. ExPASy TrEMBL
Match: A0A0A0L0Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.4e-11
Identity = 52/81 (64.20%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 9  GHFRIQLTVVVTVAAAAAAEFDASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSP 68
          G F ++   ++ V A        SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSP
Sbjct: 4  GFFSLRSVAMLIVVA-------VSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSP 63

Query: 69 SEVPAEEHRVGADGGGGHDSA 90
          SEVPAEEH    DGG   +SA
Sbjct: 64 SEVPAEEHH-ETDGGDEDNSA 76

[Close]

BLAST of CmaCh03G001330 vs. ExPASy TrEMBL
Match: A0A2N9F7M5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 32 SLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 73
          SLL+LPLVLPPLPPPP+LLLFVPVL+M  L+FLAL+PS+VP
Sbjct: 19 SLLVLPLVLPPLPPPPLLLLFVPVLMMSLLVFLALTPSQVP 59

[Close]

BLAST of CmaCh03G001330 vs. ExPASy TrEMBL
Match: A0A1R3G7K1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_36592 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.5e-06
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 32 SLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAE 75
          +LL+LPLVLPPLPPPP++LL VPVLIM FL FLALSPS+ P +
Sbjct: 12 TLLLLPLVLPPLPPPPLMLLLVPVLIMVFLFFLALSPSQEPTD 54

[Close]

BLAST of CmaCh03G001330 vs. NCBI nr
Match: KAG6603314.1 (hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-20
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 31 ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA 90
          ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA
Sbjct: 19 ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA 77

[Close]

BLAST of CmaCh03G001330 vs. NCBI nr
Match: KAA0025988.1 (hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 8.1e-12
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 32 SLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA 90
          SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  GG++SA
Sbjct: 8  SLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDSDGGYNSA 64

[Close]

BLAST of CmaCh03G001330 vs. NCBI nr
Match: TYK04223.1 (hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 32 SLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA 90
          SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  GG +SA
Sbjct: 8  SLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDCDGGFNSA 64

[Close]

BLAST of CmaCh03G001330 vs. NCBI nr
Match: KAG8648991.1 (hypothetical protein MANES_08G058601v8 [Manihot esculenta])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 5  NIQLGHFRIQLTVVVTVAAAAAAEFDASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFL 64
          N+ L HF ++   V+ V       F   LL+LPLVLPPLPPPP+ LLF+PVLIM  L+FL
Sbjct: 2  NVALNHFSLRSLTVMVV-------FTFFLLVLPLVLPPLPPPPLFLLFLPVLIMSALIFL 61

Query: 65 ALSPSEVP 73
          AL+PS VP
Sbjct: 62 ALTPSNVP 62

[Close]

BLAST of CmaCh03G001330 vs. NCBI nr
Match: OMO54075.1 (hypothetical protein COLO4_36592 [Corchorus olitorius])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 32 SLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAE 75
          +LL+LPLVLPPLPPPP++LL VPVLIM FL FLALSPS+ P +
Sbjct: 12 TLLLLPLVLPPLPPPPLMLLLVPVLIMVFLFFLALSPSQEPTD 54

[Close]

BLAST of CmaCh03G001330 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 47.4 bits (111), Expect = 7.1e-06
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 31  ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 70
           ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  PS
Sbjct: 78  ASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of CmaCh03G001330 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 47.0 bits (110), Expect = 9.3e-06
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 31  ASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 70
           ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 84  ASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CmaCh03G001330 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 9.3e-06
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 33 LLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPA 74
          LLILP  LPPLPPPP  LL +P+L+M  L+FLA SPS  P+
Sbjct: 40 LLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

The following BLAST results are available for this feature:

BLAST of CmaCh03G001330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X6L2	2.0e-05	52.54	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
C7SFP6	5.9e-05	71.79	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q6NMD6	1.0e-04	71.79	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
Q8RXL7	1.3e-04	66.67	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q8RWS1	1.3e-04	63.41	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1	[more]

BLAST of CmaCh03G001330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SII5	3.9e-12	82.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BWW3	2.0e-11	82.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L0Y7	4.4e-11	64.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1	[more]
A0A2N9F7M5	1.9e-06	80.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1	[more]
A0A1R3G7K1	5.5e-06	74.42	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_36592 PE=4 SV=1	[more]

BLAST of CmaCh03G001330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603314.1	2.8e-20	100.00	hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025988.1	8.1e-12	82.76	hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa]	[more]
TYK04223.1	4.0e-11	82.76	hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa]	[more]
KAG8648991.1	1.3e-06	55.88	hypothetical protein MANES_08G058601v8 [Manihot esculenta]	[more]
OMO54075.1	1.1e-05	74.42	hypothetical protein COLO4_36592 [Corchorus olitorius]	[more]

BLAST of CmaCh03G001330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59900.1	7.1e-06	71.79	auxin-regulated gene involved in organ size	[more]
AT2G44080.1	9.3e-06	66.67	ARGOS-like	[more]
AT2G41230.1	9.3e-06	63.41	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36023:SF3	ARGOS-LIKE PROTEIN	coord: 30..71
IPR037468	ARGOS/ARL/OSR1	PANTHER	PTHR36023	ARGOS-LIKE PROTEIN	coord: 30..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G001330.1	CmaCh03G001330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046622	positive regulation of organ growth
cellular_component	GO:0016021	integral component of membrane