CmaCh03G001090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G001090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Beta-galactosidase
Location	Cma_Chr03: 1121845 .. 1122097 (+)
RNA-Seq Expression	CmaCh03G001090
Synteny	CmaCh03G001090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACGGAAAGTTGGGTGGGATGGTTCAAGAAATGGGTTGAAGATGTAGCCTTTCATGTCGCAAGATTTTTTGAATCAGGTGGCGTGTTTAAATGCTTTCATAAATAGAAGGTACATTGGGTCGCAATTGCTCGAGTTTTGTTTTGAGAAACCCGTTCTATTAAAATTGGGAACCAACACCATAGCCCTTTTGAGCGGCACAATGGTAATGAAGAATTACGATGCATTTTATGACATGGTGCCAACATGA

mRNA sequence

ATGTTTACGGAAAGTTGGGTGGGATGGTTCAAGAAATGGGTTGAAGATGTAGCCTTTCATGTCGCAAGATTTTTTGAATCAGGTGGCGTGTACATTGGGTCGCAATTGCTCGAGTTTTGTTTTGAGAAACCCGTTCTATTAAAATTGGGAACCAACACCATAGCCCTTTTGAGCGGCACAATGGTAATGAAGAATTACGATGCATTTTATGACATGGTGCCAACATGA

Coding sequence (CDS)

ATGTTTACGGAAAGTTGGGTGGGATGGTTCAAGAAATGGGTTGAAGATGTAGCCTTTCATGTCGCAAGATTTTTTGAATCAGGTGGCGTGTACATTGGGTCGCAATTGCTCGAGTTTTGTTTTGAGAAACCCGTTCTATTAAAATTGGGAACCAACACCATAGCCCTTTTGAGCGGCACAATGGTAATGAAGAATTACGATGCATTTTATGACATGGTGCCAACATGA

Protein sequence

MFTESWVGWFKKWVEDVAFHVARFFESGGVYIGSQLLEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT

Homology

[Close]

BLAST of CmaCh03G001090 vs. ExPASy Swiss-Prot
Match: Q9SCV5 (Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 27/75 (36.00%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 1   MFTESWVGWFKKW--------VEDVAFHVARFFESGGVYIGSQLLEFCFEKPVLLKLGTN 60
           M+TE+W GWFK W         ED+AF VARFF++GG           F+   +   GTN
Sbjct: 250 MWTENWTGWFKNWGGKHPYRTAEDLAFSVARFFQTGGT----------FQNYYMYHGGTN 309

Query: 61  TIALLSGTMVMKNYD 68
              +  G  +  +YD
Sbjct: 310 FGRVAGGPYITTSYD 314

[Close]

BLAST of CmaCh03G001090 vs. ExPASy Swiss-Prot
Match: P49676 (Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 27/75 (36.00%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 1   MFTESWVGWFKKW--------VEDVAFHVARFFESGGVYIGSQLLEFCFEKPVLLKLGTN 60
           M+TE+W GWFK W         ED+AF VARFF++GG           F+   +   GTN
Sbjct: 249 MWTENWTGWFKNWGGKHPYRTAEDLAFSVARFFQTGGT----------FQNYYMYHGGTN 308

Query: 61  TIALLSGTMVMKNYD 68
              +  G  +  +YD
Sbjct: 309 FGRVAGGPYITTSYD 313

[Close]

BLAST of CmaCh03G001090 vs. ExPASy Swiss-Prot
Match: Q9MAJ7 (Beta-galactosidase 5 OS=Arabidopsis thaliana OX=3702 GN=BGAL5 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.3e-04
Identity = 27/75 (36.00%), Postives = 35/75 (46.67%), Query Frame = 0


Query: 1   MFTESWVGWF--------KKWVEDVAFHVARFFESGGVYIGSQLLEFCFEKPVLLKLGTN 60
           M+TE+W GWF        K+ VED+AF VARF + GG YI   +             GTN
Sbjct: 253 MWTEAWSGWFTEFGGTVPKRPVEDLAFGVARFIQKGGSYINYYMYHG----------GTN 312

Query: 61  TIALLSGTMVMKNYD 68
                 G  +  +YD
Sbjct: 313 FGRTAGGPFITTSYD 317

[Close]

BLAST of CmaCh03G001090 vs. ExPASy TrEMBL
Match: A0A5D3DUP4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00870 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 508 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 556

[Close]

BLAST of CmaCh03G001090 vs. ExPASy TrEMBL
Match: A0A5A7V9Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00750 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 508 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 556

[Close]

BLAST of CmaCh03G001090 vs. ExPASy TrEMBL
Match: A0A5D3BGD9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00730 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 236 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 284

[Close]

BLAST of CmaCh03G001090 vs. ExPASy TrEMBL
Match: A0A5A7U9L8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00600 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 236 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 284

[Close]

BLAST of CmaCh03G001090 vs. ExPASy TrEMBL
Match: A0A5A7TYV0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001650 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 434 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 482

[Close]

BLAST of CmaCh03G001090 vs. NCBI nr
Match: XP_008465565.1 (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 174 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 222

[Close]

BLAST of CmaCh03G001090 vs. NCBI nr
Match: KAA0046419.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 434 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 482

[Close]

BLAST of CmaCh03G001090 vs. NCBI nr
Match: KAA0050221.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 236 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 284

[Close]

BLAST of CmaCh03G001090 vs. NCBI nr
Match: KAA0062481.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 508 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 556

[Close]

BLAST of CmaCh03G001090 vs. NCBI nr
Match: TYK27403.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 31  YIGSQL----LEFCFEKPVLLKLGTNTIALLSGTMVMKNYDAFYDMVPT 76
           YIGSQ       F FEKPVLLK GTNTI LLS T+ +KNYDAFYDMVPT
Sbjct: 508 YIGSQWGSNGQSFVFEKPVLLKSGTNTITLLSATVGLKNYDAFYDMVPT 556

[Close]

BLAST of CmaCh03G001090 vs. TAIR 10
Match: AT5G20710.1 (beta-galactosidase 7 )

HSP 1 Score: 50.1 bits (118), Expect = 9.2e-07
Identity = 27/75 (36.00%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 1   MFTESWVGWFKKW--------VEDVAFHVARFFESGGVYIGSQLLEFCFEKPVLLKLGTN 60
           M+TE+W GWFK W         ED+AF VARFF++GG           F+   +   GTN
Sbjct: 250 MWTENWTGWFKNWGGKHPYRTAEDLAFSVARFFQTGGT----------FQNYYMYHGGTN 309

Query: 61  TIALLSGTMVMKNYD 68
              +  G  +  +YD
Sbjct: 310 FGRVAGGPYITTSYD 314

[Close]

BLAST of CmaCh03G001090 vs. TAIR 10
Match: AT1G45130.1 (beta-galactosidase 5 )

HSP 1 Score: 43.9 bits (102), Expect = 6.6e-05
Identity = 27/75 (36.00%), Postives = 35/75 (46.67%), Query Frame = 0


Query: 1   MFTESWVGWF--------KKWVEDVAFHVARFFESGGVYIGSQLLEFCFEKPVLLKLGTN 60
           M+TE+W GWF        K+ VED+AF VARF + GG YI   +             GTN
Sbjct: 253 MWTEAWSGWFTEFGGTVPKRPVEDLAFGVARFIQKGGSYINYYMYHG----------GTN 312

Query: 61  TIALLSGTMVMKNYD 68
                 G  +  +YD
Sbjct: 313 FGRTAGGPFITTSYD 317

The following BLAST results are available for this feature:

BLAST of CmaCh03G001090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCV5	1.3e-05	36.00	Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2	[more]
P49676	1.3e-05	36.00	Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1	[more]
Q9MAJ7	9.3e-04	36.00	Beta-galactosidase 5 OS=Arabidopsis thaliana OX=3702 GN=BGAL5 PE=2 SV=1	[more]

BLAST of CmaCh03G001090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUP4	3.8e-08	71.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0...	[more]
A0A5A7V9Y9	3.8e-08	71.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5D3BGD9	3.8e-08	71.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G0...	[more]
A0A5A7U9L8	3.8e-08	71.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G0...	[more]
A0A5A7TYV0	3.8e-08	71.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0...	[more]

BLAST of CmaCh03G001090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465565.1	7.8e-08	71.43	PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo]	[more]
KAA0046419.1	7.8e-08	71.43	beta-galactosidase 7-like [Cucumis melo var. makuwa]	[more]
KAA0050221.1	7.8e-08	71.43	beta-galactosidase 7-like [Cucumis melo var. makuwa]	[more]
KAA0062481.1	7.8e-08	71.43	beta-galactosidase 7-like [Cucumis melo var. makuwa]	[more]
TYK27403.1	7.8e-08	71.43	beta-galactosidase 7-like [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh03G001090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20710.1	9.2e-07	36.00	beta-galactosidase 7	[more]
AT1G45130.1	6.6e-05	36.00	beta-galactosidase 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001944	Glycoside hydrolase, family 35	PANTHER	PTHR23421	BETA-GALACTOSIDASE RELATED	coord: 33..75
IPR001944	Glycoside hydrolase, family 35	PANTHER	PTHR23421	BETA-GALACTOSIDASE RELATED	coord: 1..31
None	No IPR available	PANTHER	PTHR23421:SF88	BETA-GALACTOSIDASE 14	coord: 1..31
None	No IPR available	PANTHER	PTHR23421:SF88	BETA-GALACTOSIDASE 14	coord: 33..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G001090.1	CmaCh03G001090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0048046	apoplast
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds