CmaCh02G018110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G018110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA exonuclease 4
Location	Cma_Chr02: 10062356 .. 10066034 (-)
RNA-Seq Expression	CmaCh02G018110
Synteny	CmaCh02G018110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGGTTGGCATCTTTTCATTTAACCCTCTGCAATTGTTTCCAATTTTTGTCTTATTGAGTACTTGACGTTGACGATGGAAATTATAGTGTATATTTGTTTACAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTGAGATATTTTGTGTTTTTTTTGTGGTAATATATCATAACACCATCTTATTACAATCCAGTCTTTTAGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGTGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGTCAGTCGCCTGTGCTCTATGCATCATATATGAAAATTAATGAAGTTACTGATAGTTCTCTTAAAAAAATAAGGTTACTGGTAGTATATATTTCTAGATCAATCTTGAAATTGAACCATTTATTATTAGTTTTTTTTTCTTAATGCGGAACCTACTTTCATGGAGAGAAATGAAAGAATATATACGTCCATACAAAACAAGAAAAAAAAAAAAAAAGAAGAAGAAGAAAACAGCCCCAAAAAGGAGTCCAACACTAATTAAGAAAAGGACTCCGATCCAAAAGTGCAAGATCTAGTTGATATATATATATATATAAAGAGAAGCAAAGACCGATGCCCACAACGAGATCTTAATGCTCAATATACCAAGCCTCACTTGCAGGTCTCATCAAGCCCCTAAATAGCATTTGAACTTTTATTGAAAACGACCTCGATTAAGATTATTATTTATTAAAGTGCACAATATCAGTAACCCTCTGCAATATCAGGTAAACGATTAAGATTATTATTTATTAAAGTGCTTATGATATCATACATGCATTTCAAAATTTGATTGGGGTTCTGTTGTAGGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACAAATACCAATTGCGAATTACAGGTATTTGTCTGTGTCTTTGTCTTGCTCTTGAAGGAAGGTTTTAGCTTTTAGAAACCAGCCTGTTAGATGCTCATATCCTGGTAATGTTGTAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGAGTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGTGAATTTTCTCTAACTTGGGTTGTAATTATGCGTAGGTTAGTTTCACTTTTATTGAAAATGAGATGCATTTGAACTTTTAAGTGATCTGCATTTGATAACATGATTTTTTCTGGCAATAAATCCTGTCGTTGGGGGATGATAATGTGTTTTTGCTCTGAATTTTACACGACATGCTTCTCTTTTTTTGTGCACATTATTCTTACACATTCACCTTTTGGCTGAAACATTTTCTGCAGGGACACTGCTAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTAATATTCTTTGGTTCATATTGATTTAAAGAATGATAGGGTAATTTTTCGTTTCTTTCCAACTGAAGCAAGTATTTTATTAATAAACAAACATAAAAACTTCATTATTCTCTACAAAATGGAGGACGAGGGAAGTAAGATATCACCCAGCCAAAAACCTAAACCCCAGGAGTATGTGAAAAGCGACCTCTATCAAAATTATTATTTATTGATACAAAAAGGGAAAAATTATGTAAAACTCTAAACAAATTATTCCAAGTGGGGGTTAGTCCCAGACTGGTCTTTAAAGTTTTTGTTGTTCCTCTCAAGAGTGATATAAAAGCCAACTTAAAGCTCTTGTAAGCTTGTAGGATTTCTCCATGGTATTTTTGCTAGACTATAAACCCGCCATCCAGAGAGGATCTAAGCGAGCAGGAAGGAATTTCACAACACCAACGAAATTATTGCGATTGCACATACATTTTTTTATTAACTCTTTTATGTTTATTCTTAATGCTTATCATTGTGCTCTAATACCTCACGGTCTGTCCATATCTGTTACGCTAGGTATTAGGTTGGGCTTAAAGAATAAATGCGTTCTTTATTAAATCTTAGATTTGTTCTTAATGCTTATCATTGTGCTCTGGTACCTCACGGACTCTCCATATTTGTAACTATAGGTATTAGGCTTGTTCAATGCTTAAAAAGTAACTATACTTTTAAAATGCTTTGGAAAACGTGTTCTAGTGCCGGTAATCAAACCGAGCCTTGGATATCAATAAGAATGAAAAAACTGTATCCAACACATCATCCTAGAATGTTTTTAGTTGAATATGGATTCCTTATTATTTTTTAATAAACTTGTAAGGGTCAAGAAAATGAACTTGAAACCGGCTAAGCTAAGGCTAAGAAGAGCCGCCAAAGGCCAGCTGGCCATTTTCCGCTTCATTGCTAACTCATGAGCAAATCCAATGTTCTGCATCTTCCATATTGAAGAATCAAATTCATTTGGCCTTGTATAGTGTGGTATTTTACACATAAAATTTGATCATGTGGATGGAAAATGAGAGAATGTTGTCTTGGTAGGTGGTAGCATGTTTTTCTCTTTAATCTTGTTTTTAGCTTGTGAAGGATGATCTGTGAGGGCCATGGTTTTGCAGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACAAGTTAGGACACCGTTGATTGCTCCTCCCCTTGATCAGTATGTTTCTCACAGTCTTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATATGCTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGATCAGTAATGCAGACTTAGGATCAGATCATTTTCATTTTCTGCTGGGAAGAAAAGGCATAGACAGTACTCATATTGATGGGGAGAGGTGAGGTTGTTGGATGATGAAAAAGGGGGAAATGAGAAGGGAAGGTTGACCTGCTCTTTTGTATCTATCTAGCCTTTCAAGACTTGAAACGATTAAAATGCACCTGTTCTATCGTATATTGGCGTCTTGCCAATTTATGGTTGTGTTTTAGGTCTCTGTTGGTGTTTGTTTCTTGATACAGACGTGTATTGGAATGGAACGGACTTTAGAGGCATCTTTAGAAGTGTTAAATCAAATATGAAAATGATTAAATATTATTTACACTTTTCTTCGAGGGAAAAAATTGATTCTGAGGTTGGCCTACGAACATGGTCTCAG

mRNA sequence

ATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGTGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACAAATACCAATTGCGAATTACAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGAGTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCTAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACAAGTTAGGACACCGTTGATTGCTCCTCCCCTTGATCAGTATGTTTCTCACAGTCTTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATATGCTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGATCAGTAATGCAGACTTAGGATCAGATCATTTTCATTTTCTGCTGGGAAGAAAAGGCATAGACAGTACTCATATTGATGGGGAGAGGTGAGGTTGTTGGATGATGAAAAAGGGGGAAATGAGAAGGGAAGGTTGACCTGCTCTTTTGTATCTATCTAGCCTTTCAAGACTTGAAACGATTAAAATGCACCTGTTCTATCGTATATTGGCGTCTTGCCAATTTATGGTTGTGTTTTAGGTCTCTGTTGGTGTTTGTTTCTTGATACAGACGTGTATTGGAATGGAACGGACTTTAGAGGCATCTTTAGAAGTGTTAAATCAAATATGAAAATGATTAAATATTATTTACACTTTTCTTCGAGGGAAAAAATTGATTCTGAGGTTGGCCTACGAACATGGTCTCAG

Coding sequence (CDS)

ATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGTGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACAAATACCAATTGCGAATTACAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGAGTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCTAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACAAGTTAGGACACCGTTGATTGCTCCTCCCCTTGATCAGTATGTTTCTCACAGTCTTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATATGCTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGATCAGTAATGCAGACTTAG

Protein sequence

MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQT

Homology

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BLAST of CmaCh02G018110 vs. ExPASy Swiss-Prot
Match: Q4IEV5 (RNA exonuclease 4 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=REX4 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.6e-19
Identity = 54/170 (31.76%), Postives = 97/170 (57.06%), Query Frame = 0


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRY 191
           IA+DC M G G  G       + +VD     I++++V+P+  + N+R  V+G++++ +R+
Sbjct: 134 IAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMRF 193

Query: 192 AMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A   +EVQ ++ K+L              + R+LVGHDL+HDL+ L +++P   +RDTA+
Sbjct: 194 ARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDTAK 253

Query: 252 YTPLMK-TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 301
           ++   K  N    SL+ L +  LG +I+ G H   E+  + M L+++ +S
Sbjct: 254 FSGFKKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHKS 289

[Close]

BLAST of CmaCh02G018110 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-18
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 0


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRY 191
           IAMDC   G G +G       I +V+    ++ + FV+P+  +  +R  V+G+  E ++ 
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181

Query: 192 AMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A+  KE Q+K   IL              + R+LVGH L+HDL+ L +++P  +LRDT+R
Sbjct: 182 AITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLRDTSR 241

Query: 252 YTPLMK--TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 301
           + P  K      + SLK LTR  L   I++G H   E+  + M LYK+ ++
Sbjct: 242 HLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKT 278

[Close]

BLAST of CmaCh02G018110 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-18
Identity = 57/188 (30.32%), Postives = 100/188 (53.19%), Query Frame = 0


Query: 131 AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVR 190
           A+A+DC M G G  G   +   + +V++  K +++ +V+P  P+ +YR  V+G+  E ++
Sbjct: 243 ALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK 302

Query: 191 YAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTA 250
               L+ VQ++V ++L              K R+LVGH L +DL  L +++P   +RDT 
Sbjct: 303 QGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDTQ 362

Query: 251 RYTPLMKTNLVS--HSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRM-RSLNHHGQV 310
           +Y P  K+ + S   SL+ L+   LG  ++Q  H   ++  +AMRLY  + +      + 
Sbjct: 363 KYKP-FKSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARD 415

Query: 311 RTPLIAPP 316
           R PL+  P
Sbjct: 423 RRPLLTAP 415

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BLAST of CmaCh02G018110 vs. ExPASy Swiss-Prot
Match: Q6CMT3 (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=REX4 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-16
Identity = 51/167 (30.54%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRY 191
           ++MDC   G G DG       + +V+    ++ + FV+P+ P+ ++R  V+G+    +  
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179

Query: 192 AMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A+  ++ Q++V  +L              K R+LVGH + HDL  L +++P  M+RDT+R
Sbjct: 180 AVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPRRMIRDTSR 239

Query: 252 YTPLMK--TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYK 297
           + P  +  +   + SLK LT+  L  DI+ G H   E+  + M LYK
Sbjct: 240 HMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYK 272

[Close]

BLAST of CmaCh02G018110 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-16
Identity = 57/176 (32.39%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 122 EDRSDRGL-GAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHE 181
           ++R+  GL   +AMDC M G G DG   I   + +V+   K +++ +V+P   + +YR  
Sbjct: 224 KERAFEGLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTA 283

Query: 182 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMN 241
           V+G+  E V+   P K VQ++V +IL              + R LVGH + +DL  L ++
Sbjct: 284 VSGIRPEDVKKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLD 343

Query: 242 YPDHMLRDTARYTPL-MKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLY 296
           +P   +RDT +Y P   K      SLK L    L   ++ G H   ++  +AMRLY
Sbjct: 344 HPKKAIRDTQKYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLY 385

[Close]

BLAST of CmaCh02G018110 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 371.7 bits (953), Expect = 6.7e-103
Identity = 180/352 (51.14%), Postives = 239/352 (67.90%), Query Frame = 0


Query: 8   KECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGP--L 67
           K  +RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVC KHCKSFES+REHLN P  L
Sbjct: 12  KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHL 71

Query: 68  SKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRS 127
           SK NC  IF ++GC LCL++ ++  +L+ H++ C L+ P   GTS      S       +
Sbjct: 72  SKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRNPSSSL-----A 131

Query: 128 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 187
              L A+A+DC M GGG+DGT+D C  +CLVD+DE +IF+T VQP +P+ +YRHE+TGLT
Sbjct: 132 GSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLT 191

Query: 188 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 247
           +E ++  MPL+ V+E+V   L  G+       +G    LLVGHDL HD+ CL++ YP H+
Sbjct: 192 KEDLKDGMPLEHVRERVFSFLCGGQN------DGAGRLLLVGHDLRHDMSCLKLEYPSHL 251

Query: 248 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 307
           LRDTA+Y PLMKTNLVS SLKYLT++YLGY I+ G H+ YE+CVSAMRLYKRMR   H  
Sbjct: 252 LRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVC 311

Query: 308 QVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRS 358
             +             + L+S    DLEKM  + LY+ S S ++CWCLD  S
Sbjct: 312 SGKAE----------GNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLDRLS 342

[Close]

BLAST of CmaCh02G018110 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 371.7 bits (953), Expect = 6.7e-103
Identity = 180/352 (51.14%), Postives = 239/352 (67.90%), Query Frame = 0


Query: 8   KECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGP--L 67
           K  +RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVC KHCKSFES+REHLN P  L
Sbjct: 12  KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHL 71

Query: 68  SKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRS 127
           SK NC  IF ++GC LCL++ ++  +L+ H++ C L+ P   GTS      S       +
Sbjct: 72  SKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRNPSSSL-----A 131

Query: 128 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 187
              L A+A+DC M GGG+DGT+D C  +CLVD+DE +IF+T VQP +P+ +YRHE+TGLT
Sbjct: 132 GSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLT 191

Query: 188 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 247
           +E ++  MPL+ V+E+V   L  G+       +G    LLVGHDL HD+ CL++ YP H+
Sbjct: 192 KEDLKDGMPLEHVRERVFSFLCGGQN------DGAGRLLLVGHDLRHDMSCLKLEYPSHL 251

Query: 248 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 307
           LRDTA+Y PLMKTNLVS SLKYLT++YLGY I+ G H+ YE+CVSAMRLYKRMR   H  
Sbjct: 252 LRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVC 311

Query: 308 QVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRS 358
             +             + L+S    DLEKM  + LY+ S S ++CWCLD  S
Sbjct: 312 SGKAE----------GNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLDRLS 342

[Close]

BLAST of CmaCh02G018110 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 371.7 bits (953), Expect = 6.7e-103
Identity = 180/352 (51.14%), Postives = 239/352 (67.90%), Query Frame = 0


Query: 8   KECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGP--L 67
           K  +RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVC KHCKSFES+REHLN P  L
Sbjct: 12  KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHL 71

Query: 68  SKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRS 127
           SK NC  IF ++GC LCL++ ++  +L+ H++ C L+ P   GTS      S       +
Sbjct: 72  SKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRNPSSSL-----A 131

Query: 128 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 187
              L A+A+DC M GGG+DGT+D C  +CLVD+DE +IF+T VQP +P+ +YRHE+TGLT
Sbjct: 132 GSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLT 191

Query: 188 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 247
           +E ++  MPL+ V+E+V   L  G+       +G    LLVGHDL HD+ CL++ YP H+
Sbjct: 192 KEDLKDGMPLEHVRERVFSFLCGGQN------DGAGRLLLVGHDLRHDMSCLKLEYPSHL 251

Query: 248 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 307
           LRDTA+Y PLMKTNLVS SLKYLT++YLGY I+ G H+ YE+CVSAMRLYKRMR   H  
Sbjct: 252 LRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVC 311

Query: 308 QVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRS 358
             +             + L+S    DLEKM  + LY+ S S ++CWCLD  S
Sbjct: 312 SGKAE----------GNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLDRLS 342

[Close]

BLAST of CmaCh02G018110 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 362.1 bits (928), Expect = 5.3e-100
Identity = 175/359 (48.75%), Postives = 245/359 (68.25%), Query Frame = 0


Query: 3   ASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLN 62
           +S+ + E LR+KC+ACY+Q+ K EHL+EHM++SYHS H+P CGVC+KHC+SFESLREHL 
Sbjct: 5   SSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHLI 64

Query: 63  GPLSKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQG--TSLLPTDLSD-- 122
           GPL K  C  IF  +GC  C+ +L+   S   HQ+ C+ ++ V  G  T +    L D  
Sbjct: 65  GPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGLRDKA 124

Query: 123 --CYDEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIAN 182
              Y   RS R    +A+ C M GGGSDG+LD+C  +C+ DE + +IF+T+V+P + + +
Sbjct: 125 MIDYTSSRSPR---VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTS 184

Query: 183 YRHEVTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDC 242
           YR+E TG+  E +R AMPLK+VQ K+ + L NGE + ++R  GGKAR+LVGH L+HDLD 
Sbjct: 185 YRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDR 244

Query: 243 LRMNYPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYK 302
           L++ YP  M+RDTA+Y PLMKT+ +S+SLKYLT+ YLGYD+  G+ DPYE+CV+ MRLY 
Sbjct: 245 LQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYT 304

Query: 303 RMRSLNHHGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDS 356
           RMR   H  +   PL A   D     +  ++   + E+M+PD +  +SRS++ CWCLDS
Sbjct: 305 RMRYQKHKIEA-YPLAA---DAQNRSNQVAWRQSEAERMSPDEMLSISRSDYYCWCLDS 355

[Close]

BLAST of CmaCh02G018110 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 355.9 bits (912), Expect = 3.8e-98
Identity = 169/349 (48.42%), Postives = 235/349 (67.34%), Query Frame = 0


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           R+KC  CY+Q+ KKEHL+EHMR+SYHSVH+P CG+C KHC+SF+SLREHL GPL K  C 
Sbjct: 5   RNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQECK 64

Query: 72  KIFLEQGCGLCLRVLDDRTSLSGHQDICRLT-----APVRQGTSLLPTDLSDCYDEDRSD 131
            IF  +GC  CL +L+   +   HQ+ C+L+       +R     L  + +  Y   RS 
Sbjct: 65  NIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNNSTIDYTSSRSP 124

Query: 132 RGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTE 191
           R    +A+ C M GGGSDG+LD+C  +C+ DE E ++F+T+V+P IP+ NYR+E+TG+  
Sbjct: 125 R---VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRP 184

Query: 192 ERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHML 251
           E +R AM LK  Q KV + L NGE + ++R   GKAR+LVGH L++ LD L++ Y   M+
Sbjct: 185 ENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMI 244

Query: 252 RDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGQ 311
           RDTA Y PLMK++ +S+SLKYLT+ YLGYDI  G+ DPYE+CV+ MRLY RMR   H  +
Sbjct: 245 RDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMRYQKHRAE 304

Query: 312 VRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDS 356
              PL +   D    ++  ++   +LE+M+P+ L +LSRS++ CWCLDS
Sbjct: 305 A-YPLAS---DTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDS 346

The following BLAST results are available for this feature:

BLAST of CmaCh02G018110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4IEV5	7.6e-19	31.76	RNA exonuclease 4 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9...	[more]
Q08237	1.7e-18	33.33	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]
Q9GZR2	8.4e-18	30.32	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6CMT3	1.2e-16	30.54	RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	[more]
Q91560	1.2e-16	32.39	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]

BLAST of CmaCh02G018110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G48100.1	6.7e-103	51.14	Exonuclease family protein	[more]
AT2G48100.2	6.7e-103	51.14	Exonuclease family protein	[more]
AT2G48100.3	6.7e-103	51.14	Exonuclease family protein	[more]
AT3G27970.1	5.3e-100	48.75	Exonuclease family protein	[more]
AT5G40310.1	3.8e-98	48.42	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 130..304 e-value: 8.2E-29 score: 111.7
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 147..285 e-value: 4.7E-5 score: 24.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 130..313 e-value: 1.5E-41 score: 143.9
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 9..358
None	No IPR available	PANTHER	PTHR12801:SF123	EXONUCLEASE FAMILY PROTEIN	coord: 9..358
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 15..37
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 13..42 score: 11.593128
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 132..296 e-value: 4.53036E-67 score: 206.598
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 132..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G018110.1	CmaCh02G018110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding