CmaCh02G017940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G017940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box/kelch-repeat protein SKIP30-like
Location	Cma_Chr02: 10008387 .. 10009424 (+)
RNA-Seq Expression	CmaCh02G017940
Synteny	CmaCh02G017940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGTTGATTGACCGTCTCCCAGACGCGGTTGCCCTTAGGTGCCTTGCACGTGTGCCCTTCCACCTCTATCCACAGTTGGAGCTTGTTTCTCACTCCTGGCAAGCTGCCATTCACAGTGCTGAACTATACAGAGTCCGGCAGGAGATTGGATCATCAGAAGATCTATTATGCGTATGTGCATTCGAACCTGAGAATCTATGGCAGCTCTATGACCCCCTCAGAGACCTTTGGATGACAATTCCGGTATTACCATCGAAAATTAGGCATCTTGCACGCTTTGGTGCTGTGTCCACTGCTGGAAAGTTGTTTGTGCTTGGTGGTGGCAGTGATTCTGTTGATCCGTTAACCGGAGATCAAGATAGGAACTTTGCCACCAATGAGGTGTGGTCCTATGATCCTGTAATACGCCGGTGGTCTCAATGTGCATCAATGCTTGTACCCCGTGCCATGTTTGCATGCTGTGTTTTGGATGGAAAGATTGTTGTTGCAGGTGGTTTTACTAGCTGCAGAAAATCAATTTCTCAGGCAGAAATGTACGATCCTGATAAAGATGCTTGGATTCCTCTGCCTGACCTACACCACACTCACCATTCTGCTTGCACAGGGGTTGTGATTGGAGGGAAGTTGCACGTCCTGCACAAGGGATTATCAACTGTGCAAATTTTCGAGAATACGCGGCCTGGATGGAGAGTTGAAGATTATGGTTGGCTTCAAGGTCCAATGACCGTTGTCCAGGGTTCACTCTATGTGATGAGCCATGGACATATTTTCAAGCACGATGGAGAAGCTAAGAAGGTCATTATTTCAGCATCCGAATTTCGCCAACGAATTGGGTTTGCAATGATGAGTTTGAGAGATGAAATTTACGTGATTGGAGGAGATATCGGTCCCGACCGTTTGAATTGGGACGTCAAGCCAACATCTGATGTTGACATATTGACAACAGGAGGTGAGAGGCCAACATGGCGACGTGCAACATCAATGACCAGATGCCATGGGGCTATTCGGGGATGTGCTCAGTTGAGAATTTAG

mRNA sequence

ATGTCTGAGTTGATTGACCGTCTCCCAGACGCGGTTGCCCTTAGGTGCCTTGCACGTGTGCCCTTCCACCTCTATCCACAGTTGGAGCTTGTTTCTCACTCCTGGCAAGCTGCCATTCACAGTGCTGAACTATACAGAGTCCGGCAGGAGATTGGATCATCAGAAGATCTATTATGCGTATGTGCATTCGAACCTGAGAATCTATGGCAGCTCTATGACCCCCTCAGAGACCTTTGGATGACAATTCCGGTATTACCATCGAAAATTAGGCATCTTGCACGCTTTGGTGCTGTGTCCACTGCTGGAAAGTTGTTTGTGCTTGGTGGTGGCAGTGATTCTGTTGATCCGTTAACCGGAGATCAAGATAGGAACTTTGCCACCAATGAGGTGTGGTCCTATGATCCTGTAATACGCCGGTGGTCTCAATGTGCATCAATGCTTGTACCCCGTGCCATGTTTGCATGCTGTGTTTTGGATGGAAAGATTGTTGTTGCAGGTGGTTTTACTAGCTGCAGAAAATCAATTTCTCAGGCAGAAATGTACGATCCTGATAAAGATGCTTGGATTCCTCTGCCTGACCTACACCACACTCACCATTCTGCTTGCACAGGGGTTGTGATTGGAGGGAAGTTGCACGTCCTGCACAAGGGATTATCAACTGTGCAAATTTTCGAGAATACGCGGCCTGGATGGAGAGTTGAAGATTATGGTTGGCTTCAAGGTCCAATGACCGTTGTCCAGGGTTCACTCTATGTGATGAGCCATGGACATATTTTCAAGCACGATGGAGAAGCTAAGAAGGTCATTATTTCAGCATCCGAATTTCGCCAACGAATTGGGTTTGCAATGATGAGTTTGAGAGATGAAATTTACGTGATTGGAGGAGATATCGGTCCCGACCGTTTGAATTGGGACGTCAAGCCAACATCTGATGTTGACATATTGACAACAGGAGGTGAGAGGCCAACATGGCGACGTGCAACATCAATGACCAGATGCCATGGGGCTATTCGGGGATGTGCTCAGTTGAGAATTTAG

Coding sequence (CDS)

ATGTCTGAGTTGATTGACCGTCTCCCAGACGCGGTTGCCCTTAGGTGCCTTGCACGTGTGCCCTTCCACCTCTATCCACAGTTGGAGCTTGTTTCTCACTCCTGGCAAGCTGCCATTCACAGTGCTGAACTATACAGAGTCCGGCAGGAGATTGGATCATCAGAAGATCTATTATGCGTATGTGCATTCGAACCTGAGAATCTATGGCAGCTCTATGACCCCCTCAGAGACCTTTGGATGACAATTCCGGTATTACCATCGAAAATTAGGCATCTTGCACGCTTTGGTGCTGTGTCCACTGCTGGAAAGTTGTTTGTGCTTGGTGGTGGCAGTGATTCTGTTGATCCGTTAACCGGAGATCAAGATAGGAACTTTGCCACCAATGAGGTGTGGTCCTATGATCCTGTAATACGCCGGTGGTCTCAATGTGCATCAATGCTTGTACCCCGTGCCATGTTTGCATGCTGTGTTTTGGATGGAAAGATTGTTGTTGCAGGTGGTTTTACTAGCTGCAGAAAATCAATTTCTCAGGCAGAAATGTACGATCCTGATAAAGATGCTTGGATTCCTCTGCCTGACCTACACCACACTCACCATTCTGCTTGCACAGGGGTTGTGATTGGAGGGAAGTTGCACGTCCTGCACAAGGGATTATCAACTGTGCAAATTTTCGAGAATACGCGGCCTGGATGGAGAGTTGAAGATTATGGTTGGCTTCAAGGTCCAATGACCGTTGTCCAGGGTTCACTCTATGTGATGAGCCATGGACATATTTTCAAGCACGATGGAGAAGCTAAGAAGGTCATTATTTCAGCATCCGAATTTCGCCAACGAATTGGGTTTGCAATGATGAGTTTGAGAGATGAAATTTACGTGATTGGAGGAGATATCGGTCCCGACCGTTTGAATTGGGACGTCAAGCCAACATCTGATGTTGACATATTGACAACAGGAGGTGAGAGGCCAACATGGCGACGTGCAACATCAATGACCAGATGCCATGGGGCTATTCGGGGATGTGCTCAGTTGAGAATTTAG

Protein sequence

MSELIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVCAFEPENLWQLYDPLRDLWMTIPVLPSKIRHLARFGAVSTAGKLFVLGGGSDSVDPLTGDQDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGGFTSCRKSISQAEMYDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGLSTVQIFENTRPGWRVEDYGWLQGPMTVVQGSLYVMSHGHIFKHDGEAKKVIISASEFRQRIGFAMMSLRDEIYVIGGDIGPDRLNWDVKPTSDVDILTTGGERPTWRRATSMTRCHGAIRGCAQLRI

Homology

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BLAST of CmaCh02G017940 vs. ExPASy Swiss-Prot
Match: Q9M1W7 (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 516.2 bits (1328), Expect = 2.9e-145
Identity = 234/345 (67.83%), Postives = 281/345 (81.45%), Query Frame = 0


Query: 1   MSELIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCV 60
           MS L+D +P+AVALRCLA VP HL+P LELVS SW+AAI S EL+RVR+E+ SSE LLCV
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  CAFEPENLWQLYDPLRDLWMTIPVLPSKIRHLARFGAVSTAGKLFVLGGGSDSVDPLTGD 120
           CAF+PEN+WQ+Y P  D W+T+P+LPS+IRHLA FGAV+TAG LFVLGGGSD+V P+TGD
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 QDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGGFTSCRKSISQAEM 180
            D  FAT++VWSYD V R+W+  ASMLVPRAMFACCVL GKIVVAGGFT+CRKSIS AEM
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 YDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGLSTVQIFENTRPGWRVEDYGWLQ 240
           YDP+ D W  +PDLH TH+SAC+G+V+ GK+HVLHKGLSTVQ+ E+ + GW V+DYGW Q
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

Query: 241 GPMTVVQGSLYVMSHGHIFKHDGEAKKVIISASEFRQRIGFAMMSLRDEIYVIGGDIGPD 300
           GPM VV+  LYVMSHG +FK +G+  K++ SASEF++RIG AM SL DE+ ++GG IGPD
Sbjct: 248 GPMVVVEDVLYVMSHGLVFKQEGDTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGPD 307

Query: 301 RLNWDVKPTSDVDILTTGGERPTWRRATSMTRCHGAIRGCAQLRI 346
           RLNWD+KP SDVD LT G +RP WR    MTRC G I GC QL I
Sbjct: 308 RLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 352

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BLAST of CmaCh02G017940 vs. ExPASy Swiss-Prot
Match: Q0WW40 (F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana OX=3702 GN=At1g16250 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-27
Identity = 104/380 (27.37%), Postives = 160/380 (42.11%), Query Frame = 0


Query: 4   LIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVCAF 63
           +I  LPD +ALRC+A++    +  LE VS  W+  +  A+    +   G S   L V   
Sbjct: 8   IIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLTE 67

Query: 64  EPENLWQLYDPLRDLWMTIPVLPSKIR--HLARFGAVSTAGKLFVLGG-GSDSVDPLTGD 123
             +N W  YDP  D W  +P   +     H + F  V  +  L V+GG  + SV      
Sbjct: 68  RSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSSF--P 127

Query: 124 QDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGGFT-SCRKSISQAE 183
             +   T +V  +DP  ++W   ASM  PR  FAC  + GK+ VAGG   +  + I  AE
Sbjct: 128 HQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAE 187

Query: 184 MYDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGL-----STVQIFENTRPGWRVE 243
           +YDP  D W  LP +       C+G+   G  HVL   +     ++ ++F      W   
Sbjct: 188 VYDPVADRWEELPAMPRPQMD-CSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTV 247

Query: 244 DYGWLQGPMT-VVQGSLYVMSHGHIF--------------KHDGE-------AKKVIISA 303
           +  W   P +  +Q ++ VM +  ++                +GE          V+ + 
Sbjct: 248 EDVW---PFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNH 307

Query: 304 SEFRQRIGFAMMSLRDEIYVIGGDIGPDRLNWDVKPTSDVDI-------LTTGGERP-TW 344
               +  G+   +LR+E+YVIGG +    L W+       DI       +    +RP  W
Sbjct: 308 PRELEAFGYGFAALRNELYVIGGKV----LKWEESGAGRFDIVRLPVVRVCNPLDRPLNW 367

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BLAST of CmaCh02G017940 vs. ExPASy Swiss-Prot
Match: Q93W93 (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-22
Identity = 77/259 (29.73%), Postives = 116/259 (44.79%), Query Frame = 0


Query: 4   LIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVCAF 63
           L+  LPD +A+ CL RVP   + +L LV   W         Y  R+ +G SE+ + V   
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 64  EPEN--LWQLYDPLRDLWMTIPVLPSKIRHLARFGAVSTAGKLFVLGGGSDSVDPLTGDQ 123
           + +    W  +DP+  LW  +P +P +      FG    +G    L GG    DPL G  
Sbjct: 138 DRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGK---DPLRGSM 197

Query: 124 DRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGG-FTSCRKSISQAEM 183
            R      V  Y+    +W +   ML  R  F CCV++  + VAGG     ++++  AE+
Sbjct: 198 RR------VIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEV 257

Query: 184 YDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGLSTVQI-----FENTRPGWRVED 243
           YDP+K+ W  + D+  T      GVV   K  +  KGL + Q+     ++     W    
Sbjct: 258 YDPNKNRWSFIADM-STAMVPLIGVVYDKKWFL--KGLGSHQLVMSEAYDPEVNSWSPVS 317

Query: 244 YGWLQG---PMTVVQGSLY 252
            G + G   P T + G LY
Sbjct: 318 DGMVAGWRNPCTSLNGRLY 324

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BLAST of CmaCh02G017940 vs. ExPASy Swiss-Prot
Match: Q9LM55 (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-22
Identity = 67/223 (30.04%), Postives = 109/223 (48.88%), Query Frame = 0


Query: 4   LIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVC-- 63
           LI  LPD ++++ LAR+P   Y  + LVS  W++A+ ++E+Y +R+E+G +E+ L V   
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 64  AFEPENLWQLYDPLRDLWMTIPVLP----------------SKIRHLARFGAV------- 123
             E + LW   DP+   W  +P +P                + I      GA+       
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 124 -STAGKLFVLGGGSDSVDP---LTGDQDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFA 183
             ++ ++   G    +VD    + G   R+   + VW +DP++  WS+ +SML  RA   
Sbjct: 163 RDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVSSMLASRAYSK 222

Query: 184 CCVLDGKIVVAGGFTSCRKSIS---QAEMYDPDKDAWIPLPDL 195
             VL+ K+ V GG    R  +S    AE+YDP  DAW  +P +
Sbjct: 223 TGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSM 265

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BLAST of CmaCh02G017940 vs. ExPASy Swiss-Prot
Match: Q9CAG8 (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-20
Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 0


Query: 4   LIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVCAF 63
           LI  LPD VA +CLA VP   +P +  V   W+  + S E   VR+  G  E+ L V   
Sbjct: 39  LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTM 98

Query: 64  E---PENLWQLYDPLRDLWMTIPVLPSKIRHLARFGAVSTAGKLFVLGGGSDSVDPLTGD 123
                +N W++ D L     ++P +P   +    F  V   GKL V+ G       L   
Sbjct: 99  NAGGKDNRWEVMDCLGQKLSSLPPMPGPAK--TGFKVVVVDGKLLVIAGCCMINGSLV-- 158

Query: 124 QDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGGFTSCRKSISQAEM 183
                A+ +V+ YD  +  WS+ A + V R  FAC  ++G + V GG     +S+S AE+
Sbjct: 159 -----ASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDGESLSSAEV 218

Query: 184 YDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVL 215
           YDP+   W  +  L       C      GKL+V+
Sbjct: 219 YDPETCTWTFIESLRRPRW-GCFASAFNGKLYVM 242

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BLAST of CmaCh02G017940 vs. TAIR 10
Match: AT3G63220.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 516.2 bits (1328), Expect = 2.1e-146
Identity = 234/345 (67.83%), Postives = 281/345 (81.45%), Query Frame = 0


Query: 1   MSELIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCV 60
           MS L+D +P+AVALRCLA VP HL+P LELVS SW+AAI S EL+RVR+E+ SSE LLCV
Sbjct: 1   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 60

Query: 61  CAFEPENLWQLYDPLRDLWMTIPVLPSKIRHLARFGAVSTAGKLFVLGGGSDSVDPLTGD 120
           CAF+PEN+WQ+Y P  D W+T+P+LPS+IRHLA FGAV+TAG LFVLGGGSD+V P+TGD
Sbjct: 61  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 120

Query: 121 QDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGGFTSCRKSISQAEM 180
            D  FAT++VWSYD V R+W+  ASMLVPRAMFACCVL GKIVVAGGFT+CRKSIS AEM
Sbjct: 121 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 180

Query: 181 YDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGLSTVQIFENTRPGWRVEDYGWLQ 240
           YDP+ D W  +PDLH TH+SAC+G+V+ GK+HVLHKGLSTVQ+ E+ + GW V+DYGW Q
Sbjct: 181 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 240

Query: 241 GPMTVVQGSLYVMSHGHIFKHDGEAKKVIISASEFRQRIGFAMMSLRDEIYVIGGDIGPD 300
           GPM VV+  LYVMSHG +FK +G+  K++ SASEF++RIG AM SL DE+ ++GG IGPD
Sbjct: 241 GPMVVVEDVLYVMSHGLVFKQEGDTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGPD 300

Query: 301 RLNWDVKPTSDVDILTTGGERPTWRRATSMTRCHGAIRGCAQLRI 346
           RLNWD+KP SDVD LT G +RP WR    MTRC G I GC QL I
Sbjct: 301 RLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 345

[Close]

BLAST of CmaCh02G017940 vs. TAIR 10
Match: AT3G63220.2 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 516.2 bits (1328), Expect = 2.1e-146
Identity = 234/345 (67.83%), Postives = 281/345 (81.45%), Query Frame = 0


Query: 1   MSELIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCV 60
           MS L+D +P+AVALRCLA VP HL+P LELVS SW+AAI S EL+RVR+E+ SSE LLCV
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  CAFEPENLWQLYDPLRDLWMTIPVLPSKIRHLARFGAVSTAGKLFVLGGGSDSVDPLTGD 120
           CAF+PEN+WQ+Y P  D W+T+P+LPS+IRHLA FGAV+TAG LFVLGGGSD+V P+TGD
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 QDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGGFTSCRKSISQAEM 180
            D  FAT++VWSYD V R+W+  ASMLVPRAMFACCVL GKIVVAGGFT+CRKSIS AEM
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 YDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGLSTVQIFENTRPGWRVEDYGWLQ 240
           YDP+ D W  +PDLH TH+SAC+G+V+ GK+HVLHKGLSTVQ+ E+ + GW V+DYGW Q
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

Query: 241 GPMTVVQGSLYVMSHGHIFKHDGEAKKVIISASEFRQRIGFAMMSLRDEIYVIGGDIGPD 300
           GPM VV+  LYVMSHG +FK +G+  K++ SASEF++RIG AM SL DE+ ++GG IGPD
Sbjct: 248 GPMVVVEDVLYVMSHGLVFKQEGDTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGPD 307

Query: 301 RLNWDVKPTSDVDILTTGGERPTWRRATSMTRCHGAIRGCAQLRI 346
           RLNWD+KP SDVD LT G +RP WR    MTRC G I GC QL I
Sbjct: 308 RLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 352

[Close]

BLAST of CmaCh02G017940 vs. TAIR 10
Match: AT1G16250.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-28
Identity = 104/380 (27.37%), Postives = 160/380 (42.11%), Query Frame = 0


Query: 4   LIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVCAF 63
           +I  LPD +ALRC+A++    +  LE VS  W+  +  A+    +   G S   L V   
Sbjct: 8   IIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLTE 67

Query: 64  EPENLWQLYDPLRDLWMTIPVLPSKIR--HLARFGAVSTAGKLFVLGG-GSDSVDPLTGD 123
             +N W  YDP  D W  +P   +     H + F  V  +  L V+GG  + SV      
Sbjct: 68  RSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSSF--P 127

Query: 124 QDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGGFT-SCRKSISQAE 183
             +   T +V  +DP  ++W   ASM  PR  FAC  + GK+ VAGG   +  + I  AE
Sbjct: 128 HQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAE 187

Query: 184 MYDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGL-----STVQIFENTRPGWRVE 243
           +YDP  D W  LP +       C+G+   G  HVL   +     ++ ++F      W   
Sbjct: 188 VYDPVADRWEELPAMPRPQMD-CSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTV 247

Query: 244 DYGWLQGPMT-VVQGSLYVMSHGHIF--------------KHDGE-------AKKVIISA 303
           +  W   P +  +Q ++ VM +  ++                +GE          V+ + 
Sbjct: 248 EDVW---PFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNH 307

Query: 304 SEFRQRIGFAMMSLRDEIYVIGGDIGPDRLNWDVKPTSDVDI-------LTTGGERP-TW 344
               +  G+   +LR+E+YVIGG +    L W+       DI       +    +RP  W
Sbjct: 308 PRELEAFGYGFAALRNELYVIGGKV----LKWEESGAGRFDIVRLPVVRVCNPLDRPLNW 367

[Close]

BLAST of CmaCh02G017940 vs. TAIR 10
Match: AT1G55270.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 2.9e-23
Identity = 77/259 (29.73%), Postives = 116/259 (44.79%), Query Frame = 0


Query: 4   LIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVCAF 63
           L+  LPD +A+ CL RVP   + +L LV   W         Y  R+ +G SE+ + V   
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 64  EPEN--LWQLYDPLRDLWMTIPVLPSKIRHLARFGAVSTAGKLFVLGGGSDSVDPLTGDQ 123
           + +    W  +DP+  LW  +P +P +      FG    +G    L GG    DPL G  
Sbjct: 138 DRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGK---DPLRGSM 197

Query: 124 DRNFATNEVWSYDPVIRRWSQCASMLVPRAMFACCVLDGKIVVAGG-FTSCRKSISQAEM 183
            R      V  Y+    +W +   ML  R  F CCV++  + VAGG     ++++  AE+
Sbjct: 198 RR------VIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEV 257

Query: 184 YDPDKDAWIPLPDLHHTHHSACTGVVIGGKLHVLHKGLSTVQI-----FENTRPGWRVED 243
           YDP+K+ W  + D+  T      GVV   K  +  KGL + Q+     ++     W    
Sbjct: 258 YDPNKNRWSFIADM-STAMVPLIGVVYDKKWFL--KGLGSHQLVMSEAYDPEVNSWSPVS 317

Query: 244 YGWLQG---PMTVVQGSLY 252
            G + G   P T + G LY
Sbjct: 318 DGMVAGWRNPCTSLNGRLY 324

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BLAST of CmaCh02G017940 vs. TAIR 10
Match: AT1G22040.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-23
Identity = 67/223 (30.04%), Postives = 109/223 (48.88%), Query Frame = 0


Query: 4   LIDRLPDAVALRCLARVPFHLYPQLELVSHSWQAAIHSAELYRVRQEIGSSEDLLCVC-- 63
           LI  LPD ++++ LAR+P   Y  + LVS  W++A+ ++E+Y +R+E+G +E+ L V   
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 64  AFEPENLWQLYDPLRDLWMTIPVLP----------------SKIRHLARFGAV------- 123
             E + LW   DP+   W  +P +P                + I      GA+       
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 124 -STAGKLFVLGGGSDSVDP---LTGDQDRNFATNEVWSYDPVIRRWSQCASMLVPRAMFA 183
             ++ ++   G    +VD    + G   R+   + VW +DP++  WS+ +SML  RA   
Sbjct: 163 RDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVSSMLASRAYSK 222

Query: 184 CCVLDGKIVVAGGFTSCRKSIS---QAEMYDPDKDAWIPLPDL 195
             VL+ K+ V GG    R  +S    AE+YDP  DAW  +P +
Sbjct: 223 TGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSM 265

The following BLAST results are available for this feature:

BLAST of CmaCh02G017940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1W7	2.9e-145	67.83	F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1...	[more]
Q0WW40	1.9e-27	27.37	F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana OX=3702 GN=At1g1625...	[more]
Q93W93	4.1e-22	29.73	F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g5527...	[more]
Q9LM55	5.4e-22	30.04	F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g2204...	[more]
Q9CAG8	1.3e-20	31.31	F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g6748...	[more]

BLAST of CmaCh02G017940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63220.1	2.1e-146	67.83	Galactose oxidase/kelch repeat superfamily protein	[more]
AT3G63220.2	2.1e-146	67.83	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G16250.1	1.4e-28	27.37	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G55270.1	2.9e-23	29.73	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G22040.1	3.8e-23	30.04	Galactose oxidase/kelch repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006652	Kelch repeat type 1	SMART	SM00612	kelc_smart	coord: 161..209 e-value: 4.0E-6 score: 36.3 coord: 103..160 e-value: 4.3E-5 score: 32.9
IPR006652	Kelch repeat type 1	PFAM	PF01344	Kelch_1	coord: 93..146 e-value: 7.4E-9 score: 35.1 coord: 149..194 e-value: 1.0E-11 score: 44.2 coord: 278..330 e-value: 7.6E-5 score: 22.2
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 58..342 e-value: 5.5E-36 score: 126.0
IPR015915	Kelch-type beta propeller	SUPERFAMILY	117281	Kelch motif	coord: 61..329
None	No IPR available	PANTHER	PTHR24414:SF40	F-BOX/KELCH-REPEAT PROTEIN SKIP30	coord: 2..345
None	No IPR available	PANTHER	PTHR24414	F-BOX/KELCH-REPEAT PROTEIN SKIP4	coord: 2..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G017940.1	CmaCh02G017940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding