CmaCh02G017740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G017740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	U3 small nucleolar RNA-associated protein 18 homolog
Location	Cma_Chr02: 9884671 .. 9892485 (-)
RNA-Seq Expression	CmaCh02G017740
Synteny	CmaCh02G017740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTAATATCTCAAAATGTTGCTGCAATTAGTAGTCTCGAGAAGGTTACAGGGGAGACAATTGTTGCCTCGTCATCTCCTTTGAGAAACCTAGATGCTAGTGATGTAGAAATCTCTGGTGCAGATACTACTAGGCCAAAAAAGAGAAAGAAAGAACACAAAAAAGAAGATGCACAACTGGTAAAAGAACAACAACAGAAAATGAAGAAGCTTGAAAATTTTCTATTTGGATCACTTTATTCCCCTGCTGAATTTGGGAAACATGAAGAGGTAAACGGTTTGAGTGGTGAGGAAAAAGAAGCTCCTGCTTTGTATATAATGGACCGCTCTGCAAATAGCTCCCTTTCTGCATATGAAGGTGATTTTGGGCTCCTAGACGAGAGTGTTAATGAGGAGGAACCCCAGCAAAGAAAACCAGTCTGGATTGACGAGGAAGAGGAGAAGGCCACTGTTAATATTACTAATGTTAGTAGGCTGAGAAAATTGAGGAAGGAAGAGGATGAGAAATCGATTTCAGGCTCCGAGTATGTGTCCAGACTGAGGGCTCAACATGCAAAGCTAAATCCAAGCACTGAGTGGGCTCAACTTGATGTACAAACCAGTGGTGGTAGTGATGATGATGATCTATCATCAGATGATGAAAATGCAGTTGTTATGGCCGATGGTCATGATGATGTTGATTCTATTGATGATATCCTTCGAACGAGTGACAATCTTGTAGAGAAGAGTGGTGGTAAATTATTGCCCGGTCTTCTTGAATACTCAAGACTTGTAGATGCTAATGCAGAGGAGCCATCTAATGGTCCTATTCATTCGGTTCAGTTTCATCGCAATGCTCAGTTACTGCTAGCTACTGGGCTGGATCGGAGGCTTAGATTTTTTCAGATCGATGGTAAACGGAATACCAAAATTCAGAGCATTTTTCTTGAGGATTGTCCCATAAGAAAGGCATCGTTTTTGCCTGATGGATCTCAGGTAATCATATCTGGGAGGAGGAGGTTCTTCTATAGCCTCGATCTAGTGAAAGCAAAAGTTGATAAAATTGGCCCTCTCGTTGGTAGAGAGGAGAAAAGCCTTGAGGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTTGCCTTTATAGGTAACGAAGGCTATATCCTGCTAGTGTCAACCAAAACAAAGGAGCTCATCGGTACACTTAAGATGAACGGAACCGTACGTTCTTTGGCGTTTACTGACAATGGATTTCAGTTACTGAGCTCTGGGGGTGATGGGCAAGTCTACCACTGGGATTTGAGAACAAGAACGTGCATCCACAAGGGTGTGGACGAAGGTTGCATAAATGGTACTGCACTTGGCACTTCACCTAATGGAGCACTGTTTGCAGCTGGTTCTGACAGTGGCATCGTTAACATCTACAACAGAGAAGAATTCTTAGGGGGCAAGAAGAAGCCAATGAAAGCCATCGAGAATCTGACCACCAAAGTAGAGTTTCTGAAGTTCAATCACGATGCTCAAATATTGGCCATCTGTTCAAGGATGAAAAAAAGTAGTTTGAAGTTGATACACGTTCCTTCTTTCACAACATTTTCAAACTGGCCGCCACCAAAGAAGAATCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCCGTGGGAAATGCTGCTGGTAAGGTATTATTGTATAAACTACATCATTACCGTCATGCTTAGATTTGATCTCCAGATATTTGAATCATCAGTGGTGGGAACAGTTTTGATACTTGTATTACTTACTACTAACGCTCAGCTGTTGTTACTGTAGCCTAGTTTTTACAGTTACTGGGTTCTTACACATTTTCTATGTAATAAGAACGGTTTTTTTTTTGTTCTTGAGATGAAAGGTTGATCCTAAAGAAAGAAGAGATTATTTCTACATGTTTCTGAATCGCCCAATAATATTCCTAATTTGGGGTTGAGAATTACTGGTGTTGTGAATTCTAATTTTTGAAAATGAGTGTATGATAAGTCAACAATAGAATATATCTAATTAACCTACTTATGGAAATTATTATATTTATGCGAAAATAAGCGTGTAGGCCCCACTTGTTACAGATAAACTATGTGTATGTTTGGAAGTTAATTTTAAAGGTTCAAAAATGAAATGTGAACTTGGATTAACAAAAGTATTAAAATGAGTAATACCATCCAATAGTTTTTAGGGCGGGCAAAGCAATATAACTGAAAGGACATGTCGGAAATTGAAGCTAAGTAGCAATGTAGTTGGGAAAAGAGTGTAGTAACTTATTTGAACATGTTTTTTGTAGGGTAGTAGTAGTAGCAGTGTAGTGAATGGAGCAGGCAGGGCAGTGAATCCCAAGCACAAATCCGTTTCCTCTTCTGAAACTGTTCATTTACTTTCCCCACGTATGCAATTGCATAGGTGAACCCACCTGTGGAGTGGAATGGATAGTGTAAGTTGCAGGTGGTGGGTTTGGTTAGGGCATGCAGGAAGGAGTGGGATTTTGTTTTGATCCAATGGAGGATGAAAATGAAGTTCCAATGGTTGTAAGCTCTGCAGGGATGTTGTAAGCTCTGCACGGAGGGGTTGGGTTGCACCTCCTCCATTTACTAGGATAGGATGAAAATGGAAGCTACCCTTGAATCCCGTCTCTTCGTGGATTCAATTTTATCAACCTTTGTTTTTGTACGGATCACCTTCTTTTATTTTTTGAATTCAACAACATAAAAAAAAAAAAAAAACACAATGTGTAGATTAATTTAAATAATGGTAATCTATTTATTTTTTAATTTTGTTTTGCGTCACACTCGGTGATATAAATGAACCATTGACCCACATATTAACTCATTACCATCATCTCTCTCTCTTCTTCTTTTTTTTTTTCTCTTTAGCTATTAAATTATAGATTTTGAAAAACTTCAAATTTTATTCAAAATTATTTATGTAATTCTGTCCGAAAAAATTATGAAATTTCTTCGAATATATAGAAGTGAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACGCGCACACACACACAAAGAAATTGAACAAGTCCAAGAAATGGAATGAATGCATGAAGGAAAGAAAGGCAAAGAAAAAGACAAAGGCATCGTTGTTTTTGAGCATTGAAGAACTCGGCGCGGTTCATCTCTTCAATCCTCCTCCTGCTTTAGTCCTCTTTCTCTCTCTCTTAATTCTTTTTCTTTTCTTTTCCCTTCTCTCCCTTCCCTTCCCTTCCCTTTCGAATTAAAACGTGAAAAACAGAATTAAATCCATTTTCTTTTCCCCAACCAAAAAAAAAAAAAACAACTCTTGTTCATGCTCCGAAGCCAAGGCAAGGGCGTTGTTTCATTTCATTTCATTTCATCGATTCCAGATCAAGCCCCTTGAATCTCTCCAAATCCCTCAAAACCCACGTCTATTCCCCTCTAATTTCTCCAACCCATTTCCAAATCTTCAATCCAATCCATCAGATATCCCTTTCCCATCTTCAAATGCTCCATTTTTTCTGATCTTTGACTCCTCTTTTCACCCGCCTTTCTTCTCTTTCTTCTCCTCTCATGCTCTTCCTTCTGCCTCTAATGGGGATGGGTCTCTGAAAAAATGCACGTAAATTTCTCTTATCAACAAATGCTGAAGGCATGCAGAGTTGCGCTACGTGGTTGAGGTTTCAGATTCTTGGGGCATGGCGAATCAGGTGGTCAAAGTCAAGAGGGAAGCGATTGCGGCATGCATCACTTGCCCGCTTTGTAATAAGCTTCTGAAAGAAGCCACCACCATCTCTGAATGTCTTCATACCTGTGAGTCGCTTTTCTTCTTCCTCCTCTTCTTTTTGCCCCTCTCTTACCTTCTTTTCTCTCTCTCTTTTTTCTTTTTTTACTAGTCTCCATCCAATTTTGTTCTTTGAAGCTATTTATGGTAGTTTCCATCTTTGATTTTGAAATTCTTTTTTCGTTTGTTTAGATTAATTGCTGTTGACCCTTTTGTTACTCATTGACTAATGTTCTTCATAAATGAAAGTTGATTTCTAGTGGATAATCAGCTTTCTTCTTCATTTGGTTTGGTACTGTTTCATTTTTTAGTTCATATTCTTTATGGCTTCATTATTTCAACGTTACAAATTCGAAACAAGTTAAGTGATTGCTTCTTAATAAAACTACATATTTTGATTCTTCTCTATGTCCGTGTGTGTCACATTTTATCTCTCTGCTGTTCTATAAAGCAGAACTCACTAAATTAATCATCTTTTTTGGAAGTAATCACAAGTTTTTAGGGGAAGGACTATTTTTTTCTTTGCCAATTAAGACGGGTGATATGTGCCATATATCTACTTTTTCCTGCTTAAAATTATACGAATGAAAGGAAATGAGTTAACATGTTGTTGCATTTGATCACTGTACAAGTAGTTTTTATGACAGCTCGGTGTCAAAACTTTTTCAGTTTGCAGAAAGTGCATACATGATAAGATTTCTGATGATGAACTAGAAAGCTGTCCAGTATGTAACATCGACCTTGGGTGTGCCCCATTGGAGAAATTAAGGTAAGATTTGTAATTTCGTAATGCCACTGCCTGTCACCTACTCCTTTCCCAGTCTTTATTTGCGCTAATACAATCAATCTTTGAGTCTGCATTTTTGTAGTTGTTTCTAGTGATTCGACATAGATATGAAGTTCTATTTTCCTAGATTTGCAGATGTCAACAAAACCTTTTTAGTTGTTTTCGTGCCTTTTCCATGGGATTATCTGAAGAAAATATATGATTCTTTTGATATAAACATGATATTCATTCCATGACATAATTAGTTTTACCAGTCGGTACATCAATGCACGATTTTTAATTAATCAAACAAGCATTTTAGCACAGCCATACCCCATTTTTCTGCTTGTTATTAGTTTACAATTTGGATGTCATGGAATTGGCTGAATGAGATCAAAAGCTACCATTTATTCACAGTTCTTCACAAAATGTAGATTATGACATTCTTTATTTCTTCATTTTCAAAATTTCATAATATAGAGTTTTTAGTAAGAATTCGTAAGTAGTCGAGAGAATTTAAACTTGAGCTTCTAATCATCAGGCCAGACCACAATCTAGAAGATTTAAGGGCTAAGATTTTCCCTAGTAGAAGGAGAAAAGCCAAAACGCCTGAAGTTGCTCCTGTTATACTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCCAGAGTCTCAAGTCATGCAACCACAAGTGGAAGAAGAGCAGCAGCTGCTGCTAGAATTGCTGCTGTCTTACGAACACCAAGAGTCTCCTCTGAGAAGCGTGTGAAGAAAGAGGATGATTCCATGGAAGACTGTTCAGAGAGCTCGAGTTCCCTTGAGACATCAGAAAAATTCAATCAGAACAAAAGACCGGTAAAGGAAGAAATTTCTGGTCCCAATTCAAGGTTGTTTTTTTCCCATCAGGACCTTCTGTTTAATAGTAACATTTTGTCTTAATATTGGACTTAGTGCAGGATTCCAGTCCTTCCAAGTCTACCATATCTTTGCGAAATAAAGAAGTCGAAAATGGCGTTGATTCAATGGAAGGAAACATGGATATCTGGAAACCTTTAAATTACTTGGTAGAAGTTGCAAATAGGAGTAAATGTTTCAAATCTAATTCAGAGAATAAAGTCGAGCTTGCAGAAGTCGATGGGAGTGAAGCTCAGGCCAGTAAGTCTAGAAATAGGGAAAGCAAACGCAAGCAAAAACGTGAGAACGGAAAAACTAGAACAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTTCGCCAGAAAAAGGAACCTTTTTATGGGAACTCCAGCATTACACCCCAGGTTGTGTTGGATGCCACTAGTGCTCGGCTTGAAAGAAGAGCTGGTCCAATTTGGCTTTCACTCATAGCTTCTGATCAGTGAGACAAACTCTGTTCCCTACAAAATGCTTGAAAACTAAACAAATTTCAACGAACATTTATGCCTTTACTTAACTAAACTTTGGTTTCAGGGAAGGAGATGTAACGTTGCCGCAAATTCCTGCTAGTTATTTGAGAATAAAGTAAGTTCCTTTTAGCTTCATTGGATATAGACAAGCTCTACTCATCCTTATTGTAGTTGTCAGGTAACCTAATCGTATTATATAGGGTGTACAAGAGTAACTTTCATCCCCGTTTTCAAATTTTCCAGAATAGAATTTTTTTCAGTGTTTCAAAAAATTATCTGAAATTTTGAGCTGTCTAAACTATTTGTCAAGTTTCCTCATGAATCTTGTGCAGGATTATTATGAGAGAATAGTTTTTCCTGTATCTTAGACCAGGAAGGAGCCTCAAATGATAATTTTTTTGGGGCTTCAAATTCATGACATTTTGACCAAGGATATATGTTTAACTGATTGAACTATGATTAGGTTGGTACCCCCATCGAACTTTGGTTGTCATTTGACTAACCAACTTTATATTAGCTTGCACGTAAATTTATACTAATGGTTGCGAGTAAATTGATACTCAAATGAAGCTAACTTCTACTGACATGTTTGCTCGTCTGTGTGTGTGTGGAAGAAAACTTTTACTGAGTTGGAGTTGAAATTATATCATAATCTTTGTCGCAGGGATGGGAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCTCCAGCGAATCAGAGGTGGAAAAGCTCATATCCTCTAATTTAGTTGAGCTTGTTGTTTCATTTTTATAAAATGGGTTAAGCTTGATGCATAATTATTGTGCAGGTTGAGGTGAAGTGCATGGGACATCCAGTAGTGCCCACACTGGATTTGCATAGTTTAGTTGATTTGTGGCTTCAAACAGCAGCAACCTCCGAAAAGATCTCAGCATCAATTGGGTCGTCAGCTGAGGATTTCATTATGGTTCTTTACTATGCTAGAAAGATCACAGTTTCTTGATCTTCACTTTCCTTCACATTGCTGCCTTCAATCTGCATGTAAGGGTCTTCACACCGTTCGCTCTCTTCCCGGCAAAAGTTGCTGAAAGGGCCCTGAAATGCTTATTATTTAATCACAGTTGAGTATCAATTACTGCATCAATCCTAGTTCCTCAAAAGTTTGTTAGACTTAAACATTTTAGGGTAAGCAACACAGGTACGTATGGGAGTGGCATAAACACAATGGAAATTCCTTTTACACCACATCATCAAATAAAGGCAACAACAACTAATTTATTTAACCAAGTGGTGTTGGGTGTAATGAAATATTTGACCATTAGTAACTCCCTCAGCAGTTGCTTTTACTTTGGTAGAAGAGATGTACTTGAATTGTGTAGCCAATACCAAATTTGCATCATTCTAAT

mRNA sequence

ATGAGTTTAATATCTCAAAATGTTGCTGCAATTAGTAGTCTCGAGAAGGTTACAGGGGAGACAATTGTTGCCTCGTCATCTCCTTTGAGAAACCTAGATGCTAGTGATGTAGAAATCTCTGGTGCAGATACTACTAGGCCAAAAAAGAGAAAGAAAGAACACAAAAAAGAAGATGCACAACTGGTAAAAGAACAACAACAGAAAATGAAGAAGCTTGAAAATTTTCTATTTGGATCACTTTATTCCCCTGCTGAATTTGGGAAACATGAAGAGGTAAACGGTTTGAGTGGTGAGGAAAAAGAAGCTCCTGCTTTGTATATAATGGACCGCTCTGCAAATAGCTCCCTTTCTGCATATGAAGGTGATTTTGGGCTCCTAGACGAGAGTGTTAATGAGGAGGAACCCCAGCAAAGAAAACCAGTCTGGATTGACGAGGAAGAGGAGAAGGCCACTGTTAATATTACTAATGTTAGTAGGCTGAGAAAATTGAGGAAGGAAGAGGATGAGAAATCGATTTCAGGCTCCGAGTATGTGTCCAGACTGAGGGCTCAACATGCAAAGCTAAATCCAAGCACTGAGTGGGCTCAACTTGATGTACAAACCAGTGGTGGTAGTGATGATGATGATCTATCATCAGATGATGAAAATGCAGTTGTTATGGCCGATGGTCATGATGATGTTGATTCTATTGATGATATCCTTCGAACGAGTGACAATCTTGTAGAGAAGAGTGGTGGTAAATTATTGCCCGGTCTTCTTGAATACTCAAGACTTGTAGATGCTAATGCAGAGGAGCCATCTAATGGTCCTATTCATTCGGTTCAGTTTCATCGCAATGCTCAGTTACTGCTAGCTACTGGGCTGGATCGGAGGCTTAGATTTTTTCAGATCGATGGTAAACGGAATACCAAAATTCAGAGCATTTTTCTTGAGGATTGTCCCATAAGAAAGGCATCGTTTTTGCCTGATGGATCTCAGGTAATCATATCTGGGAGGAGGAGGTTCTTCTATAGCCTCGATCTAGTGAAAGCAAAAGTTGATAAAATTGGCCCTCTCGTTGGTAGAGAGGAGAAAAGCCTTGAGGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTTGCCTTTATAGGTAACGAAGGCTATATCCTGCTAGTGTCAACCAAAACAAAGGAGCTCATCGGTACACTTAAGATGAACGGAACCGTACGTTCTTTGGCGTTTACTGACAATGGATTTCAGTTACTGAGCTCTGGGGGTGATGGGCAAGTCTACCACTGGGATTTGAGAACAAGAACGTGCATCCACAAGGGTGTGGACGAAGGTTGCATAAATGGTACTGCACTTGGCACTTCACCTAATGGAGCACTGTTTGCAGCTGGTTCTGACAGTGGCATCGTTAACATCTACAACAGAGAAGAATTCTTAGGGGGCAAGAAGAAGCCAATGAAAGCCATCGAGAATCTGACCACCAAAGTAGAGTTTCTGAAGTTCAATCACGATGCTCAAATATTGGCCATCTGTTCAAGGATGAAAAAAAGTAGTTTGAAGTTGATACACGTTCCTTCTTTCACAACATTTTCAAACTGGCCGCCACCAAAGAAGAATCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCCGTGGGAAATGCTGCTGGTAAGGGTAGTAGTAGTAGCAGTGTAGTGAATGGAGCAGGCAGGGCAGTGAATCCCAAGCACAAATCCGTTTCCTCTTCTGAAACTGTTCATTTACTTTCCCCACGTATGCAATTGCATAGGCATGCAGAGTTGCGCTACGTGGTTGAGGTTTCAGATTCTTGGGGCATGGCGAATCAGGTGGTCAAAGTCAAGAGGGAAGCGATTGCGGCATGCATCACTTGCCCGCTTTGTAATAAGCTTCTGAAAGAAGCCACCACCATCTCTGAATGTCTTCATACCTTTTGCAGAAAGTGCATACATGATAAGATTTCTGATGATGAACTAGAAAGCTGTCCAGTATGTAACATCGACCTTGGGTGTGCCCCATTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCTAAGATTTTCCCTAGTAGAAGGAGAAAAGCCAAAACGCCTGAAGTTGCTCCTGTTATACTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCCAGAGTCTCAAGTCATGCAACCACAAGTGGAAGAAGAGCAGCAGCTGCTGCTAGAATTGCTGCTGTCTTACGAACACCAAGAGTCTCCTCTGAGAAGCGTGTGAAGAAAGAGGATGATTCCATGGAAGACTGTTCAGAGAGCTCGAGTTCCCTTGAGACATCAGAAAAATTCAATCAGAACAAAAGACCGGATTCCAGTCCTTCCAAGTCTACCATATCTTTGCGAAATAAAGAAGTCGAAAATGGCGTTGATTCAATGGAAGGAAACATGGATATCTGGAAACCTTTAAATTACTTGGTAGAAGTTGCAAATAGGAGTAAATGTTTCAAATCTAATTCAGAGAATAAAGTCGAGCTTGCAGAAGTCGATGGGAGTGAAGCTCAGGCCAGTAAGTCTAGAAATAGGGAAAGCAAACGCAAGCAAAAACGTGAGAACGGAAAAACTAGAACAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTTCGCCAGAAAAAGGAACCTTTTTATGGGAACTCCAGCATTACACCCCAGGTTGTGTTGGATGCCACTAGTGCTCGGCTTGAAAGAAGAGCTGGTCCAATTTGGCTTTCACTCATAGCTTCTGATCAGGAAGGAGATGTAACGTTGCCGCAAATTCCTGCTAGTTATTTGAGAATAAAGGATGGGAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCTCCAGCGAATCAGAGGTGGAAAAGCTCATATCCTCTAATTTAGTTGAGGTGAAGTGCATGGGACATCCAGTAGTGCCCACACTGGATTTGCATAGTTTAGTTGATTTGTGGCTTCAAACAGCAGCAACCTCCGAAAAGATCTCAGCATCAATTGGGTCGTCAGCTGAGGATTTCATTATGGTTCTTTACTATGCTAGAAAGATCACAGTTTCTTGATCTTCACTTTCCTTCACATTGCTGCCTTCAATCTGCATGTAAGGGTCTTCACACCGTTCGCTCTCTTCCCGGCAAAAGTTGCTGAAAGGGCCCTGAAATGCTTATTATTTAATCACAGTTGAGTATCAATTACTGCATCAATCCTAGTTCCTCAAAAGTTTGTTAGACTTAAACATTTTAGGGTAAGCAACACAGGTACGTATGGGAGTGGCATAAACACAATGGAAATTCCTTTTACACCACATCATCAAATAAAGGCAACAACAACTAATTTATTTAACCAAGTGGTGTTGGGTGTAATGAAATATTTGACCATTAGTAACTCCCTCAGCAGTTGCTTTTACTTTGGTAGAAGAGATGTACTTGAATTGTGTAGCCAATACCAAATTTGCATCATTCTAAT

Coding sequence (CDS)

ATGAGTTTAATATCTCAAAATGTTGCTGCAATTAGTAGTCTCGAGAAGGTTACAGGGGAGACAATTGTTGCCTCGTCATCTCCTTTGAGAAACCTAGATGCTAGTGATGTAGAAATCTCTGGTGCAGATACTACTAGGCCAAAAAAGAGAAAGAAAGAACACAAAAAAGAAGATGCACAACTGGTAAAAGAACAACAACAGAAAATGAAGAAGCTTGAAAATTTTCTATTTGGATCACTTTATTCCCCTGCTGAATTTGGGAAACATGAAGAGGTAAACGGTTTGAGTGGTGAGGAAAAAGAAGCTCCTGCTTTGTATATAATGGACCGCTCTGCAAATAGCTCCCTTTCTGCATATGAAGGTGATTTTGGGCTCCTAGACGAGAGTGTTAATGAGGAGGAACCCCAGCAAAGAAAACCAGTCTGGATTGACGAGGAAGAGGAGAAGGCCACTGTTAATATTACTAATGTTAGTAGGCTGAGAAAATTGAGGAAGGAAGAGGATGAGAAATCGATTTCAGGCTCCGAGTATGTGTCCAGACTGAGGGCTCAACATGCAAAGCTAAATCCAAGCACTGAGTGGGCTCAACTTGATGTACAAACCAGTGGTGGTAGTGATGATGATGATCTATCATCAGATGATGAAAATGCAGTTGTTATGGCCGATGGTCATGATGATGTTGATTCTATTGATGATATCCTTCGAACGAGTGACAATCTTGTAGAGAAGAGTGGTGGTAAATTATTGCCCGGTCTTCTTGAATACTCAAGACTTGTAGATGCTAATGCAGAGGAGCCATCTAATGGTCCTATTCATTCGGTTCAGTTTCATCGCAATGCTCAGTTACTGCTAGCTACTGGGCTGGATCGGAGGCTTAGATTTTTTCAGATCGATGGTAAACGGAATACCAAAATTCAGAGCATTTTTCTTGAGGATTGTCCCATAAGAAAGGCATCGTTTTTGCCTGATGGATCTCAGGTAATCATATCTGGGAGGAGGAGGTTCTTCTATAGCCTCGATCTAGTGAAAGCAAAAGTTGATAAAATTGGCCCTCTCGTTGGTAGAGAGGAGAAAAGCCTTGAGGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTTGCCTTTATAGGTAACGAAGGCTATATCCTGCTAGTGTCAACCAAAACAAAGGAGCTCATCGGTACACTTAAGATGAACGGAACCGTACGTTCTTTGGCGTTTACTGACAATGGATTTCAGTTACTGAGCTCTGGGGGTGATGGGCAAGTCTACCACTGGGATTTGAGAACAAGAACGTGCATCCACAAGGGTGTGGACGAAGGTTGCATAAATGGTACTGCACTTGGCACTTCACCTAATGGAGCACTGTTTGCAGCTGGTTCTGACAGTGGCATCGTTAACATCTACAACAGAGAAGAATTCTTAGGGGGCAAGAAGAAGCCAATGAAAGCCATCGAGAATCTGACCACCAAAGTAGAGTTTCTGAAGTTCAATCACGATGCTCAAATATTGGCCATCTGTTCAAGGATGAAAAAAAGTAGTTTGAAGTTGATACACGTTCCTTCTTTCACAACATTTTCAAACTGGCCGCCACCAAAGAAGAATCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCCGTGGGAAATGCTGCTGGTAAGGGTAGTAGTAGTAGCAGTGTAGTGAATGGAGCAGGCAGGGCAGTGAATCCCAAGCACAAATCCGTTTCCTCTTCTGAAACTGTTCATTTACTTTCCCCACGTATGCAATTGCATAGGCATGCAGAGTTGCGCTACGTGGTTGAGGTTTCAGATTCTTGGGGCATGGCGAATCAGGTGGTCAAAGTCAAGAGGGAAGCGATTGCGGCATGCATCACTTGCCCGCTTTGTAATAAGCTTCTGAAAGAAGCCACCACCATCTCTGAATGTCTTCATACCTTTTGCAGAAAGTGCATACATGATAAGATTTCTGATGATGAACTAGAAAGCTGTCCAGTATGTAACATCGACCTTGGGTGTGCCCCATTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCTAAGATTTTCCCTAGTAGAAGGAGAAAAGCCAAAACGCCTGAAGTTGCTCCTGTTATACTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCCAGAGTCTCAAGTCATGCAACCACAAGTGGAAGAAGAGCAGCAGCTGCTGCTAGAATTGCTGCTGTCTTACGAACACCAAGAGTCTCCTCTGAGAAGCGTGTGAAGAAAGAGGATGATTCCATGGAAGACTGTTCAGAGAGCTCGAGTTCCCTTGAGACATCAGAAAAATTCAATCAGAACAAAAGACCGGATTCCAGTCCTTCCAAGTCTACCATATCTTTGCGAAATAAAGAAGTCGAAAATGGCGTTGATTCAATGGAAGGAAACATGGATATCTGGAAACCTTTAAATTACTTGGTAGAAGTTGCAAATAGGAGTAAATGTTTCAAATCTAATTCAGAGAATAAAGTCGAGCTTGCAGAAGTCGATGGGAGTGAAGCTCAGGCCAGTAAGTCTAGAAATAGGGAAAGCAAACGCAAGCAAAAACGTGAGAACGGAAAAACTAGAACAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTTCGCCAGAAAAAGGAACCTTTTTATGGGAACTCCAGCATTACACCCCAGGTTGTGTTGGATGCCACTAGTGCTCGGCTTGAAAGAAGAGCTGGTCCAATTTGGCTTTCACTCATAGCTTCTGATCAGGAAGGAGATGTAACGTTGCCGCAAATTCCTGCTAGTTATTTGAGAATAAAGGATGGGAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCTCCAGCGAATCAGAGGTGGAAAAGCTCATATCCTCTAATTTAGTTGAGGTGAAGTGCATGGGACATCCAGTAGTGCCCACACTGGATTTGCATAGTTTAGTTGATTTGTGGCTTCAAACAGCAGCAACCTCCGAAAAGATCTCAGCATCAATTGGGTCGTCAGCTGAGGATTTCATTATGGTTCTTTACTATGCTAGAAAGATCACAGTTTCTTGA

Protein sequence

MSLISQNVAAISSLEKVTGETIVASSSPLRNLDASDVEISGADTTRPKKRKKEHKKEDAQLVKEQQQKMKKLENFLFGSLYSPAEFGKHEEVNGLSGEEKEAPALYIMDRSANSSLSAYEGDFGLLDESVNEEEPQQRKPVWIDEEEEKATVNITNVSRLRKLRKEEDEKSISGSEYVSRLRAQHAKLNPSTEWAQLDVQTSGGSDDDDLSSDDENAVVMADGHDDVDSIDDILRTSDNLVEKSGGKLLPGLLEYSRLVDANAEEPSNGPIHSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRRFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGTVRSLAFTDNGFQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALGTSPNGALFAAGSDSGIVNIYNREEFLGGKKKPMKAIENLTTKVEFLKFNHDAQILAICSRMKKSSLKLIHVPSFTTFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKGSSSSSVVNGAGRAVNPKHKSVSSSETVHLLSPRMQLHRHAELRYVVEVSDSWGMANQVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCIHDKISDDELESCPVCNIDLGCAPLEKLRPDHNLEDLRAKIFPSRRRKAKTPEVAPVILPPVRRKERSLSSLVVNSPRVSSHATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLETSEKFNQNKRPDSSPSKSTISLRNKEVENGVDSMEGNMDIWKPLNYLVEVANRSKCFKSNSENKVELAEVDGSEAQASKSRNRESKRKQKRENGKTRTDPVSPETEKPKKLRRVRQKKEPFYGNSSITPQVVLDATSARLERRAGPIWLSLIASDQEGDVTLPQIPASYLRIKDGNLPVSFVQKYLMRKLDLSSESEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISASIGSSAEDFIMVLYYARKITVS

Homology

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BLAST of CmaCh02G017740 vs. ExPASy Swiss-Prot
Match: Q9FMU5 (U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1)

HSP 1 Score: 628.2 bits (1619), Expect = 1.6e-178
Identity = 339/535 (63.36%), Postives = 406/535 (75.89%), Query Frame = 0


Query: 33  DASDVEISGA--DTTRPKKRKKEHKKEDAQLVKEQQQKMKKLENFLFGSLYSPAEFGKHE 92
           D  D E  G+  D TR K+RK E  KE  +L + +  +MKKLEN +FGSLYSP  FGK E
Sbjct: 24  DVEDEEEIGSDDDLTRGKRRKTE--KEKQKLEESELVEMKKLENLIFGSLYSPVTFGKEE 83

Query: 93  EVNGLSGEEKEAPALYIMDRSANSSLSAYEGDFGLLDESVNEEEPQQ------RKPVWID 152
           E +G         AL+ +DRSA   +  YE D G  DE +++EE  Q       +  W D
Sbjct: 84  EEDG--------SALFHVDRSAVRQIPDYEDD-GDDDEELSDEENGQVVAIRKGEAAWED 143

Query: 153 EEEEKATVNITNVSRLRKLRKEEDEKSISGSEYVSRLRAQHAKLNPSTEWAQLDVQTSGG 212
           EEE++  V+I +V+RLRKLRKEE+E  ISGSEY++RLRA HAKLNP T+WA+ D Q   G
Sbjct: 144 EEEKQINVDIASVNRLRKLRKEENEGLISGSEYIARLRAHHAKLNPGTDWARPDSQIVDG 203

Query: 213 SDDDDLSSDDENAVVMADGHDDVDSIDDILRTSDNLVEKS-GGKLLPGLLEYSRLVDANA 272
              DD  + D               +DDILRT+++LV KS G KL  G LEYS+LVDANA
Sbjct: 204 ESSDDDDTQD-------------GGVDDILRTNEDLVVKSRGNKLCAGRLEYSKLVDANA 263

Query: 273 EEPSNGPIHSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPD 332
            +PSNGPI+SV FH+NAQLLL  GLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKA+FLP+
Sbjct: 264 ADPSNGPINSVHFHQNAQLLLTAGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKAAFLPN 323

Query: 333 GSQVIISGRRRFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILL 392
           GSQVI+SGRR+FFYS DL KAK DKIGPLVGREEKSLE FEVS DS+T+AF+GNEGYILL
Sbjct: 324 GSQVIVSGRRKFFYSFDLEKAKFDKIGPLVGREEKSLEYFEVSQDSNTIAFVGNEGYILL 383

Query: 393 VSTKTKELIGTLKMNGTVRSLAFTDNGFQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCIN 452
           VSTKTKELIGTLKMNG+VRSLAF+++G  LLSSGGDGQVY WDLRT  C++KGVDEG   
Sbjct: 384 VSTKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQVYVWDLRTMKCLYKGVDEGSTC 443

Query: 453 GTALGTSPNGALFAAGSDSGIVNIYNREEFLGGKKKPMKAIENLTTKVEFLKFNHDAQIL 512
           GT+L +S NGALFA+G+D GIVNIY + EF+GGK+KP+K ++NLT+K++F+KFNHDAQIL
Sbjct: 444 GTSLCSSLNGALFASGTDRGIVNIYKKSEFVGGKRKPIKTVDNLTSKIDFMKFNHDAQIL 503

Query: 513 AICSRMKKSSLKLIHVPSFTTFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGK 559
           AI S M K+S+KL+HVPS T FSNWPPP   + YP CLDFSP  G+MA+GNAAGK
Sbjct: 504 AIVSTMNKNSVKLVHVPSLTVFSNWPPPNSTMHYPRCLDFSPGSGFMAMGNAAGK 534

[Close]

BLAST of CmaCh02G017740 vs. ExPASy Swiss-Prot
Match: Q94AY3 (E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.8e-111
Identity = 230/434 (53.00%), Postives = 312/434 (71.89%), Query Frame = 0


Query: 615  NQVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCIHDKISDDELESCPVCNID 674
            + V KVKRE + AC+TCPLC+KLL++ATTISECLHTFCRKCI++KI++DE+ESCPVC+ID
Sbjct: 4    DMVAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDID 63

Query: 675  LGCAPLEKLRPDHNLEDLRAKIFPSRRRKAKTPEVAPVILPPVRRKERSLSSLVVNSPRV 734
            LG  PLEKLRPDH L+DLRAK+FP +R+K + PEV   I  P +RKERS+SSLVV++PRV
Sbjct: 64   LGGTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPRV 123

Query: 735  SSHATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLETSEKFNQNKR 794
            S+ A T+G+R  AA R    +R     +++ VKKE++  +D  ES+SS ET +KF QNKR
Sbjct: 124  SAQAGTTGKRTKAATR--KDVRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQNKR 183

Query: 795  PDS--SPSKSTISLRNKEVENGVDSMEGNMDIWKPLNYLVEVANRSKCFKSNSENKVELA 854
              S  +P++S  + RNK+V+   DS    + +WKPLN+LV+VAN +K      + K EL 
Sbjct: 184  QSSYANPNQSLSNRRNKDVDEPWDS---KLHLWKPLNFLVDVANGTK------DPKSELG 243

Query: 855  EVDGSEAQASKSRNRESKRKQK-RENGKTRTDPVSPETEKPKKLRRVRQKKEPFYGNSSI 914
                ++ Q SK++ ++ KRK K  E      DP + ET   K+ RR R+K+   +G+S I
Sbjct: 244  NASHNDVQGSKTKTKDHKRKCKLEEEISNNGDPTTSETATLKRTRRTRRKRSSTFGDSRI 303

Query: 915  TPQVVLDATSARLERRAGPIWLSLIA-SDQEGDVTLPQIPASYLRIKDGNLPVSFVQKYL 974
               ++  A S + ERR G +W SL+A S+QEG+ +LPQIPA+YLRI+DGN+PVSF+QKYL
Sbjct: 304  --PLLPGAASLKQERRNGHVWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYL 363

Query: 975  MRKLDLSSESEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISASIGSS 1034
            MRKLDL SE E         VE+ CMG PV+PTL LHSLVDLWL+T +  ++++ASIGSS
Sbjct: 364  MRKLDLKSEDE---------VEITCMGEPVIPTLQLHSLVDLWLETTSKHQRVAASIGSS 415

Query: 1035 AEDFIMVLYYARKI 1045
            A++F+MVL Y+RK+
Sbjct: 424  AKEFVMVLVYSRKL 415

[Close]

BLAST of CmaCh02G017740 vs. ExPASy Swiss-Prot
Match: Q9M9Y4 (E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2)

HSP 1 Score: 386.7 bits (992), Expect = 8.2e-106
Identity = 227/435 (52.18%), Postives = 308/435 (70.80%), Query Frame = 0


Query: 617  VVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCIHDKISDDELESCPVCNIDLG 676
            ++KVK+E + AC++C +C+ +L++ATTISECLHTFCRKCI++KI++DE+E+CPVCNIDLG
Sbjct: 2    MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61

Query: 677  CAPLEKLRPDHNLEDLRAKIFPSRRRKAKTPEVAPVILPPVRRKERSLSSLVVNSPRVSS 736
              PLEKLRPDHNL+DLRAKIF  +RRK K P +  +   P +RKERS+SSLVV++P VS+
Sbjct: 62   STPLEKLRPDHNLQDLRAKIFALKRRKVKAPGIVSL---PGKRKERSISSLVVSTPMVSA 121

Query: 737  HATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLETSEKFNQNKRPD 796
             A T+ RR  A  R    LR   + +E+ VKKE+ S ++  ES+SS +T  KF QNKR  
Sbjct: 122  QAGTTRRRTKAPTR--KELRNGSL-AERTVKKEESSGDELLESTSSPDTLNKFTQNKRQS 181

Query: 797  SSPSKSTISLRNKEVENGVDSMEGNMDIWKPLNYLVEVANRSKCFKSN----SENKVELA 856
                K +IS  NKE ++G +  +  MD WKPLN+LVEVAN +K  KS+    S +K E A
Sbjct: 182  KKSCKESIS--NKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKSEHA 241

Query: 857  EVDGSEAQASKSRNRESKRKQKRENGKTRT-DPVSPETEKPKKLRRVRQKKE-PFYGNSS 916
             V  ++ Q SK++ +  KRK KRE+ K+   DP + ET  PK++R  ++K+     G+S 
Sbjct: 242  NVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLGDSR 301

Query: 917  ITPQVVLDATSARLERRAGPIWLSLIAS-DQEGDVTLPQIPASYLRIKDGNLPVSFVQKY 976
              PQ   D +SA+ ERR GP+W SL+AS DQEG  +LPQIPA++LRI+DGN  VSF+QKY
Sbjct: 302  NLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKY 361

Query: 977  LMRKLDLSSESEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISASIGS 1036
            LMRKLDL SE+E         +E+KCMG  V+PTL L++LVDLWLQ ++  ++ +A +GS
Sbjct: 362  LMRKLDLESENE---------IEIKCMGEAVIPTLTLYNLVDLWLQKSSNHQRFAALVGS 416

Query: 1037 SAEDFIMVLYYARKI 1045
            SA+DF MVL YARK+
Sbjct: 422  SAKDFTMVLVYARKL 416

[Close]

BLAST of CmaCh02G017740 vs. ExPASy Swiss-Prot
Match: Q9Y5J1 (U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=UTP18 PE=1 SV=3)

HSP 1 Score: 284.6 bits (727), Expect = 4.4e-75
Identity = 172/430 (40.00%), Postives = 248/430 (57.67%), Query Frame = 0


Query: 135 PQQRKPVWIDEE-EEKATVNITNVSRLRKLRKEEDEKSISGSEYVSRLRA--QHAKLNPS 194
           P Q+KPVW+DEE E++  V++ N    + + K   E  +S      RL+   QHA +   
Sbjct: 135 PPQKKPVWVDEEDEDEEMVDMMNNRFRKDMMKNASESKLSKDNLKKRLKEEFQHA-MGGV 194

Query: 195 TEWAQLDVQTSGGSDDDDLSSDDENAVVMADGHDDVDSIDDILRTSDNLVEKSGGKLLPG 254
             WA+    T   +  DD S +DE               DD+L+ + N +  S   L  G
Sbjct: 195 PAWAE---TTKRKTSSDDESEEDE---------------DDLLQRTGNFISTS-TSLPRG 254

Query: 255 LLEYSRLVDANAEEPSNGPIHSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLE 314
           +L+      ANAE P+   I SVQFH  AQ+++  GLD  +  FQ+DGK N KIQSI+LE
Sbjct: 255 ILKMKNCQHANAERPTVARISSVQFHPGAQIVMVAGLDNAVSLFQVDGKTNPKIQSIYLE 314

Query: 315 DCPIRKASFLPDGSQVI-ISGRRRFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSS 374
             PI KA F  +G +V+  S   +  Y  D++  K+  +  + G +EK +  FEVSPD S
Sbjct: 315 RFPIFKACFSANGEEVLATSTHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGS 374

Query: 375 TVAFIGNEGYILLVSTKTKELIGTLKMNGTVRSLAFTDNGFQLLSSGGDGQVYHWDLRTR 434
            +   G  GY+ L++ KTKELIG++K+NG V +  F+ +  ++ +S GDG+VY WD+ +R
Sbjct: 375 FLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSR 434

Query: 435 TCIHKGVDEGCINGTALGTSPNGALFAAGSDSGIVNIYNREEFL-GGKKKPMKAIENLTT 494
            C+++ VDEG + G ++ TS NG   A GS+ G+VNIYN++  L     KP+KAI NL T
Sbjct: 435 KCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVT 494

Query: 495 KVEFLKFNHDAQILAICSRMKKSSLKLIHVPSFTTFSNWPPPK-KNLQYPSCLDFSPEGG 554
            V  L FN   +ILAI S   K +++L+H+PS T FSN+P  K KN+ +   +DFSP  G
Sbjct: 495 GVTSLTFNPTTEILAIASEKMKEAVRLVHLPSCTVFSNFPVIKNKNISHVHTMDFSPRSG 544

Query: 555 YMAVGNAAGK 559
           Y A+GN  GK
Sbjct: 555 YFALGNEKGK 544

[Close]

BLAST of CmaCh02G017740 vs. ExPASy Swiss-Prot
Match: Q5SSI6 (U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Utp18 PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.5e-72
Identity = 170/466 (36.48%), Postives = 265/466 (56.87%), Query Frame = 0


Query: 99  EKEAPALYIMDRSANSSLSAYEGDFGLLDESVNEEEPQQRKPVWIDEEEEKATVNITNVS 158
           E +  AL    RS+   L     +  + +E+ +    ++++PVW+DE++E   +   + +
Sbjct: 94  EDDEDALLQRLRSSRGQLHGSSDESEVENEAKDIFSQKKKQPVWVDEDDEDEEIVDMSNN 153

Query: 159 RLRK-LRKEEDEKSISGSEYVSRLRA--QHAKLNPSTEWAQLDVQTSGGSDDDDLSSDDE 218
           R RK + K   E  +S  +   RL+   QHA +    +WA+   +    SDD+  S +DE
Sbjct: 154 RFRKDIMKNASESKLSKDKLQKRLKEEFQHA-MGGVPDWAEAGSKRRTSSDDE--SEEDE 213

Query: 219 NAVVMADGHDDVDSIDDILRTSDNLVEKSGGKLLPGLLEYSRLVDANAEEPSNGPIHSVQ 278
                          DD+L+ + N +  S   L  G+L+      ANAE P+   I SVQ
Sbjct: 214 ---------------DDLLQRTGNFISTS-TSLPRGILKMKNCRPANAERPTTARISSVQ 273

Query: 279 FHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVI-ISGRRR 338
           FH  AQ+++ +G+D  +  FQ+DGK N KIQSI+LE  PI KA F  +G +V+  S   +
Sbjct: 274 FHPGAQVVMVSGVDNAISLFQVDGKTNPKIQSIYLEKFPIFKACFSANGEEVLATSMHSK 333

Query: 339 FFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGT 398
             Y  D++  K+  +  + G +EK+++ FEVSPD S +   G  G+  L+S KTKELIG+
Sbjct: 334 VLYVYDMLAGKLIPVHQVRGLKEKTVKQFEVSPDGSFLLISGIAGFSHLLSMKTKELIGS 393

Query: 399 LKMNGTVRSLAFTDNGFQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALGTSPNGA 458
           +K+NG + +  F+ +  ++ +   +G+VY WD+ +R C+++ +DEG + G ++  S NG 
Sbjct: 394 MKINGRIAASTFSSDSKRIYTYSENGEVYVWDVNSRKCMNRFLDEGSLCGLSIAASKNGQ 453

Query: 459 LFAAGSDSGIVNIYNREEFL-GGKKKPMKAIENLTTKVEFLKFNHDAQILAICSRMKKSS 518
             A GS SG+VNIYN++  L     KP+KAI NL T V  L FN   +ILA+ SR  K +
Sbjct: 454 YVACGSKSGVVNIYNQDSCLQQTNPKPIKAIMNLVTGVTSLAFNPTTEILAVASRKMKEA 513

Query: 519 LKLIHVPSFTTFSNWPPPKKN-LQYPSCLDFSPEGGYMAVGNAAGK 559
           ++L+H+PS T FSN+P  KK+ L     +DFSP GGY A+GN  G+
Sbjct: 514 VRLVHLPSCTVFSNFPVFKKSTLSRVQTMDFSPRGGYFALGNEKGR 540

[Close]

BLAST of CmaCh02G017740 vs. TAIR 10
Match: AT5G14050.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 628.2 bits (1619), Expect = 1.1e-179
Identity = 339/535 (63.36%), Postives = 406/535 (75.89%), Query Frame = 0


Query: 33  DASDVEISGA--DTTRPKKRKKEHKKEDAQLVKEQQQKMKKLENFLFGSLYSPAEFGKHE 92
           D  D E  G+  D TR K+RK E  KE  +L + +  +MKKLEN +FGSLYSP  FGK E
Sbjct: 24  DVEDEEEIGSDDDLTRGKRRKTE--KEKQKLEESELVEMKKLENLIFGSLYSPVTFGKEE 83

Query: 93  EVNGLSGEEKEAPALYIMDRSANSSLSAYEGDFGLLDESVNEEEPQQ------RKPVWID 152
           E +G         AL+ +DRSA   +  YE D G  DE +++EE  Q       +  W D
Sbjct: 84  EEDG--------SALFHVDRSAVRQIPDYEDD-GDDDEELSDEENGQVVAIRKGEAAWED 143

Query: 153 EEEEKATVNITNVSRLRKLRKEEDEKSISGSEYVSRLRAQHAKLNPSTEWAQLDVQTSGG 212
           EEE++  V+I +V+RLRKLRKEE+E  ISGSEY++RLRA HAKLNP T+WA+ D Q   G
Sbjct: 144 EEEKQINVDIASVNRLRKLRKEENEGLISGSEYIARLRAHHAKLNPGTDWARPDSQIVDG 203

Query: 213 SDDDDLSSDDENAVVMADGHDDVDSIDDILRTSDNLVEKS-GGKLLPGLLEYSRLVDANA 272
              DD  + D               +DDILRT+++LV KS G KL  G LEYS+LVDANA
Sbjct: 204 ESSDDDDTQD-------------GGVDDILRTNEDLVVKSRGNKLCAGRLEYSKLVDANA 263

Query: 273 EEPSNGPIHSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPD 332
            +PSNGPI+SV FH+NAQLLL  GLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKA+FLP+
Sbjct: 264 ADPSNGPINSVHFHQNAQLLLTAGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKAAFLPN 323

Query: 333 GSQVIISGRRRFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILL 392
           GSQVI+SGRR+FFYS DL KAK DKIGPLVGREEKSLE FEVS DS+T+AF+GNEGYILL
Sbjct: 324 GSQVIVSGRRKFFYSFDLEKAKFDKIGPLVGREEKSLEYFEVSQDSNTIAFVGNEGYILL 383

Query: 393 VSTKTKELIGTLKMNGTVRSLAFTDNGFQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCIN 452
           VSTKTKELIGTLKMNG+VRSLAF+++G  LLSSGGDGQVY WDLRT  C++KGVDEG   
Sbjct: 384 VSTKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQVYVWDLRTMKCLYKGVDEGSTC 443

Query: 453 GTALGTSPNGALFAAGSDSGIVNIYNREEFLGGKKKPMKAIENLTTKVEFLKFNHDAQIL 512
           GT+L +S NGALFA+G+D GIVNIY + EF+GGK+KP+K ++NLT+K++F+KFNHDAQIL
Sbjct: 444 GTSLCSSLNGALFASGTDRGIVNIYKKSEFVGGKRKPIKTVDNLTSKIDFMKFNHDAQIL 503

Query: 513 AICSRMKKSSLKLIHVPSFTTFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGK 559
           AI S M K+S+KL+HVPS T FSNWPPP   + YP CLDFSP  G+MA+GNAAGK
Sbjct: 504 AIVSTMNKNSVKLVHVPSLTVFSNWPPPNSTMHYPRCLDFSPGSGFMAMGNAAGK 534

[Close]

BLAST of CmaCh02G017740 vs. TAIR 10
Match: AT2G30580.1 (DREB2A-interacting protein 2 )

HSP 1 Score: 404.4 bits (1038), Expect = 2.7e-112
Identity = 230/434 (53.00%), Postives = 312/434 (71.89%), Query Frame = 0


Query: 615  NQVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCIHDKISDDELESCPVCNID 674
            + V KVKRE + AC+TCPLC+KLL++ATTISECLHTFCRKCI++KI++DE+ESCPVC+ID
Sbjct: 4    DMVAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDID 63

Query: 675  LGCAPLEKLRPDHNLEDLRAKIFPSRRRKAKTPEVAPVILPPVRRKERSLSSLVVNSPRV 734
            LG  PLEKLRPDH L+DLRAK+FP +R+K + PEV   I  P +RKERS+SSLVV++PRV
Sbjct: 64   LGGTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPRV 123

Query: 735  SSHATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLETSEKFNQNKR 794
            S+ A T+G+R  AA R    +R     +++ VKKE++  +D  ES+SS ET +KF QNKR
Sbjct: 124  SAQAGTTGKRTKAATR--KDVRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQNKR 183

Query: 795  PDS--SPSKSTISLRNKEVENGVDSMEGNMDIWKPLNYLVEVANRSKCFKSNSENKVELA 854
              S  +P++S  + RNK+V+   DS    + +WKPLN+LV+VAN +K      + K EL 
Sbjct: 184  QSSYANPNQSLSNRRNKDVDEPWDS---KLHLWKPLNFLVDVANGTK------DPKSELG 243

Query: 855  EVDGSEAQASKSRNRESKRKQK-RENGKTRTDPVSPETEKPKKLRRVRQKKEPFYGNSSI 914
                ++ Q SK++ ++ KRK K  E      DP + ET   K+ RR R+K+   +G+S I
Sbjct: 244  NASHNDVQGSKTKTKDHKRKCKLEEEISNNGDPTTSETATLKRTRRTRRKRSSTFGDSRI 303

Query: 915  TPQVVLDATSARLERRAGPIWLSLIA-SDQEGDVTLPQIPASYLRIKDGNLPVSFVQKYL 974
               ++  A S + ERR G +W SL+A S+QEG+ +LPQIPA+YLRI+DGN+PVSF+QKYL
Sbjct: 304  --PLLPGAASLKQERRNGHVWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYL 363

Query: 975  MRKLDLSSESEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISASIGSS 1034
            MRKLDL SE E         VE+ CMG PV+PTL LHSLVDLWL+T +  ++++ASIGSS
Sbjct: 364  MRKLDLKSEDE---------VEITCMGEPVIPTLQLHSLVDLWLETTSKHQRVAASIGSS 415

Query: 1035 AEDFIMVLYYARKI 1045
            A++F+MVL Y+RK+
Sbjct: 424  AKEFVMVLVYSRKL 415

[Close]

BLAST of CmaCh02G017740 vs. TAIR 10
Match: AT1G06770.1 (DREB2A-interacting protein 1 )

HSP 1 Score: 386.7 bits (992), Expect = 5.8e-107
Identity = 227/435 (52.18%), Postives = 308/435 (70.80%), Query Frame = 0


Query: 617  VVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCIHDKISDDELESCPVCNIDLG 676
            ++KVK+E + AC++C +C+ +L++ATTISECLHTFCRKCI++KI++DE+E+CPVCNIDLG
Sbjct: 2    MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61

Query: 677  CAPLEKLRPDHNLEDLRAKIFPSRRRKAKTPEVAPVILPPVRRKERSLSSLVVNSPRVSS 736
              PLEKLRPDHNL+DLRAKIF  +RRK K P +  +   P +RKERS+SSLVV++P VS+
Sbjct: 62   STPLEKLRPDHNLQDLRAKIFALKRRKVKAPGIVSL---PGKRKERSISSLVVSTPMVSA 121

Query: 737  HATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLETSEKFNQNKRPD 796
             A T+ RR  A  R    LR   + +E+ VKKE+ S ++  ES+SS +T  KF QNKR  
Sbjct: 122  QAGTTRRRTKAPTR--KELRNGSL-AERTVKKEESSGDELLESTSSPDTLNKFTQNKRQS 181

Query: 797  SSPSKSTISLRNKEVENGVDSMEGNMDIWKPLNYLVEVANRSKCFKSN----SENKVELA 856
                K +IS  NKE ++G +  +  MD WKPLN+LVEVAN +K  KS+    S +K E A
Sbjct: 182  KKSCKESIS--NKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKSEHA 241

Query: 857  EVDGSEAQASKSRNRESKRKQKRENGKTRT-DPVSPETEKPKKLRRVRQKKE-PFYGNSS 916
             V  ++ Q SK++ +  KRK KRE+ K+   DP + ET  PK++R  ++K+     G+S 
Sbjct: 242  NVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLGDSR 301

Query: 917  ITPQVVLDATSARLERRAGPIWLSLIAS-DQEGDVTLPQIPASYLRIKDGNLPVSFVQKY 976
              PQ   D +SA+ ERR GP+W SL+AS DQEG  +LPQIPA++LRI+DGN  VSF+QKY
Sbjct: 302  NLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKY 361

Query: 977  LMRKLDLSSESEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISASIGS 1036
            LMRKLDL SE+E         +E+KCMG  V+PTL L++LVDLWLQ ++  ++ +A +GS
Sbjct: 362  LMRKLDLESENE---------IEIKCMGEAVIPTLTLYNLVDLWLQKSSNHQRFAALVGS 416

Query: 1037 SAEDFIMVLYYARKI 1045
            SA+DF MVL YARK+
Sbjct: 422  SAKDFTMVLVYARKL 416

[Close]

BLAST of CmaCh02G017740 vs. TAIR 10
Match: AT1G06770.2 (DREB2A-interacting protein 1 )

HSP 1 Score: 229.2 bits (583), Expect = 1.6e-59
Identity = 153/318 (48.11%), Postives = 209/318 (65.72%), Query Frame = 0


Query: 734  VSSHATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLETSEKFNQNK 793
            VS+ A T+ RR  A  R    LR   + +E+ VKKE+ S ++  ES+SS +T  KF QNK
Sbjct: 2    VSAQAGTTRRRTKAPTR--KELRNGSL-AERTVKKEESSGDELLESTSSPDTLNKFTQNK 61

Query: 794  RPDSSPSKSTISLRNKEVENGVDSMEGNMDIWKPLNYLVEVANRSKCFKSN----SENKV 853
            R      K +IS  NKE ++G +  +  MD WKPLN+LVEVAN +K  KS+    S +K 
Sbjct: 62   RQSKKSCKESIS--NKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKS 121

Query: 854  ELAEVDGSEAQASKSRNRESKRKQKRENGKTRT-DPVSPETEKPKKLRRVRQKKE-PFYG 913
            E A V  ++ Q SK++ +  KRK KRE+ K+   DP + ET  PK++R  ++K+     G
Sbjct: 122  EHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLG 181

Query: 914  NSSITPQVVLDATSARLERRAGPIWLSLIAS-DQEGDVTLPQIPASYLRIKDGNLPVSFV 973
            +S   PQ   D +SA+ ERR GP+W SL+AS DQEG  +LPQIPA++LRI+DGN  VSF+
Sbjct: 182  DSRNLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFI 241

Query: 974  QKYLMRKLDLSSESEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISAS 1033
            QKYLMRKLDL SE+E         +E+KCMG  V+PTL L++LVDLWLQ ++  ++ +A 
Sbjct: 242  QKYLMRKLDLESENE---------IEIKCMGEAVIPTLTLYNLVDLWLQKSSNHQRFAAL 301

Query: 1034 IGSSAEDFIMVLYYARKI 1045
            +GSSA+DF MVL YARK+
Sbjct: 302  VGSSAKDFTMVLVYARKL 302

[Close]

BLAST of CmaCh02G017740 vs. TAIR 10
Match: AT3G23060.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-43
Identity = 156/488 (31.97%), Postives = 232/488 (47.54%), Query Frame = 0


Query: 617  VVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCIHDKISDDELESCPVCNIDLG 676
            + KV  + +  C+ CP+C    K+ATTISECLHTFCR CI +K  ++ + +CPVCN++LG
Sbjct: 2    LTKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLG 61

Query: 677  CAPLEKLRPDHNLEDLRAKIFPSRRRKAKT--PEVAPVILPPVRRKERSLSSLVVNSPRV 736
              PLEKLR D   +DL+ KI+ +     K   P+     +   ++K +S +SL V+S RV
Sbjct: 62   VFPLEKLRSDCTWQDLKLKIYRAMMESLKKAGPKTVAASVKSSKKKRKSRTSLRVSSSRV 121

Query: 737  SSHATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLE-TSEKFNQNK 796
            SS   T    A        V+  P V  E++ ++   +++   +   + +    K +  K
Sbjct: 122  SSSPDTPLEPA------NVVVEPPNVVVEEKHRETVLALQSTRKPIITFQKRGRKASLPK 181

Query: 797  RPDSSPS----------KSTISLRNKEVENGVDSMEGN---------MDIWKPLNYLVEV 856
            + DS P           K+   L N+  +NG+D  EG+          D+ KP+  L   
Sbjct: 182  KIDSKPEPELPPKEPKIKNLFDLNNEPEDNGLDEAEGSTFQEVVPKEKDLCKPIFSLSVT 241

Query: 857  AN--------------------------RSKCFKSNSENKVELAEVDGSEAQASKSRNRE 916
             N                          ++KC   N E K    +V+ +    S  R+RE
Sbjct: 242  LNINDTPPDIVEPEISSDDDTEESVEPIQNKCV-VNRETKEVPVQVNQNSLLISSDRDRE 301

Query: 917  SKRKQK-RENG----KTRTDPVSPETEKPKKLR-RV-RQKKEPFYGNSS-ITPQVVLDAT 976
                QK + NG    ++R        EK   LR R+ R+   P  G ++   P  V +  
Sbjct: 302  DNSGQKLKTNGAATSRSRKKKGKKPVEKSYSLRPRIGRRTVNPAAGTTTPEAPVSVEEEM 361

Query: 977  SARLERRAGPIWLSLIAS-DQEGDVTLPQIPASYLRIKDGNLPVSFVQKYLMRKLDLSSE 1036
                 R   P+W SL  S  Q  ++ LP I A  +R+KD N+ VS+++KYLM KL L SE
Sbjct: 362  KVEEGRNNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESE 421

Query: 1037 SEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISASIGSSAEDFIMVLY 1048
             +         VE+     PV  +L LH+LVD W+QT    E+ SA +GSSA +FIM LY
Sbjct: 422  DQ---------VEIWLRDEPVCSSLTLHNLVDWWVQTTPLPERQSAMVGSSAAEFIMDLY 473

The following BLAST results are available for this feature:

BLAST of CmaCh02G017740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMU5	1.6e-178	63.36	U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=...	[more]
Q94AY3	3.8e-111	53.00	E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 ...	[more]
Q9M9Y4	8.2e-106	52.18	E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 ...	[more]
Q9Y5J1	4.4e-75	40.00	U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=...	[more]
Q5SSI6	3.5e-72	36.48	U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN...	[more]

BLAST of CmaCh02G017740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14050.1	1.1e-179	63.36	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G30580.1	2.7e-112	53.00	DREB2A-interacting protein 2	[more]
AT1G06770.1	5.8e-107	52.18	DREB2A-interacting protein 1	[more]
AT1G06770.2	1.6e-59	48.11	DREB2A-interacting protein 1	[more]
AT3G23060.1	3.5e-43	31.97	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 256..296 e-value: 7.5 score: 11.5 coord: 388..426 e-value: 1.1E-5 score: 34.8 coord: 429..469 e-value: 10.0 score: 10.7
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 394..435 score: 10.942887
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 631..671 e-value: 4.4E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 631..672 score: 11.869652
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 631..671 e-value: 4.8E-8 score: 32.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 724..742
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 849..903
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 860..894
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 724..745
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 778..810
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 758..814
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 760..775
None	No IPR available	PANTHER	PTHR18359:SF0	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 18 HOMOLOG	coord: 46..558
None	No IPR available	PANTHER	PTHR18359	WD-REPEAT PROTEIN-RELATED	coord: 46..558
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 394..429 score: 8.518333
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 627..695
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 615..713 e-value: 5.1E-19 score: 70.1
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 246..558 e-value: 1.7E-101 score: 341.8
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 647..656
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 267..557

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G017740.1	CmaCh02G017740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0034388	Pwp2p-containing subcomplex of 90S preribosome
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity