CmaCh02G017720 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G017720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Signal recognition particle 9 kDa protein
Location	Cma_Chr02: 9876769 .. 9880101 (-)
RNA-Seq Expression	CmaCh02G017720
Synteny	CmaCh02G017720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAATGTCAAGCTTTCCCTCTCTTTATTTTCCAACATTTTTCACATCGCGCTTCTGAAATTCATTCCGAAGAAACCGAAGTGGTCGCACGCTCCCTAAATTTCCCAAGCTTTCCCGCTCTTTACCTTTTGCCGCAGAGCCATGGTGTACATTGCCTCATGGGACGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCGTAAGTTATATCTTCGAAATTGGATTCCCCACATATCGTCTTCTATTTGACTGCTGAGAAATTAACATCACAGATCAGAAATCAGATCGCGTCGTTGCATTTTTATTCTCTAATTGCCTCTTTAACTGTTGATTTTCACGAAACTGAGCAAATCAGCGCCGCGGAATTGAATGATATAACGTGAGCATAATGAATTGTGAAGAGCGTTCTAATTTATCTATCTCACTTGCTTGGTTTATCTGAACATGAACTTACACTTGATGCATATGCTCCATTTATTGCATCTTTCGTCGTATTTTGTTTCGTTCTAACTGCGAACACTGCTTTCTTTTTCAACCCTATTGGAAATTTAGACGCGGTACAACATTAAGTATCGGCACTGCGATGGGAAACTGGTTCTCAAGGTCACCGATAACCGTGAGGTAAGGAATTGGTTGTTGGATCATTGATTAACATGTCAGTGTTCTTGTGATTAGTGATACTAAATGCGTGCCTCTTTGGTTCATATGGCAAAATTTTAGCCGTATGGATATCTTATGCCAATGTTTGAAAATGCGTGTTCAGGCTTCGATGCACGTGTATCCAAGTAGACTTGTGATCAAGTTTTCCTTCTATATATGCTTCTCCGCTTTATTCTTCTGTAAAGTGTTGATTAGACAACCATTGAATTGGATGCCACTGTTTTATGCAACCCCAAACTAACTACTAGTTTAGAAATCAGGTCTTATATCTAATCCTAATCCAAACCAAAAGTTCCACTGACTCTTTTGGTTTCTTTTATTATATTGGCCGAAGAGGTCTTTCATAACCTTTCTAGCAGAAGATTAGGACGTGCGAGTGTTTATTACCATGTTAAGAATCATTTTCTTCTCTTTCTCATGTGGAAATGTGAAAACTAATTAGGGCGAAATACATGGATTCAAGATATCAACTAAGAATATGATGATTAAAACTCATCTATTGGTTCTTACTTGTATGGGAAATTTACTCGATGTGTGCATTTTATCCTCATGATAAACGGGGACGATTCAATGATCTTATATTGAAACGGACACTCTGGAAGTTAACCAATGGGCATAAGGACATTTGTCAAATCATAATAATATCTTTATTGGAATAGTAGTTCTTATCTTTCTAGATGTGAAAGGTCTACTAATTTTCTCTTTTTCTTTTTCTTTCTTTTGTTTTCTCCCTGTTTGCCAGTGTCTCAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCGCACTGATGGCCCGGGGACCTGATGGTATTTTTCTTTGAATTTATGTCATTAATGGAGCATCTGAATACTCTGTGCATAATAAATATCCACTTGCTGTTGACATGATTTTCTAACAAAGTTTTATTAAGATTTGAATCCTTGTAGTCTATATTGATAAATGGAATGAAAATTCTATATTCTCTAATTGAATGAAAGTCCCATATCCTTAACTTTGAGCAACTTGTAAATTAGTTCCATGATGATATCAGTACTTGAAGGACGAGTTCACGTCTCTTCTAAATGCAGATTCGTGTCTGTGAATGAATGTATGTCTGCTTGCTAACTTTGTTAAATTGGAAAAAATGGTTCTCAACGTACCTGGACTTCTCACAATCTATGATCTGAAAAATGCAACCCTAGCATTCATGGCCCATCTTTTGTTTATATTTTTTATTTCCTATTATTATTATTTACCCAGAAAACTTTCAACTTATAAATCTAATGTGCACTCGGTTCTACTAGTTGGAATGATCTTATGTTTTGCCGTTTCTCTTTTGTGAAGTGGATATATCGGAAGTCACAGGCAAGGAGCAGGCTGATGCACAGCCAACCAAGAAAGGGAGGGGGAGGAAGCAATGACTTCTCATTGACTACTGCACGCATAGGTTTCTCGTTGTTCTCTAAACCCATTGATGAATTATAATCTCAATTTACGAATTATTTTGGTTCATCTTCTCATCTTGCTTTTTTCGGAATAGATTACTAGGATTCTGGAGTAAATTTTCCGTATGCCATCTCATTTTTCTTGAAAAAAATTGGTGTGCAGCTCGTTGTCATGCATGATTTTTATTCTATATTGATAGACATTTTCACAAGTTCTACCTCGGTACACAGATTTGTTCATATGCTGCACGATCTGTTAACATCTTGTGCCAAAACTTCATCATATTTTGGTTCAAAGTAATATAAGAAATTTTCTGTTATTGAGTGTATCCATTGTTATTGAGTGCAAGGCAATTAAATCTATTTGATTATTTATCTTCCATTAAAAAATCAACTGAGATCGAGTATTTTGTTTGGTAGATTATTAGAAGTTGGCAGACTTTGCTTTCTTGTGCCTCCTGATTTCAGATTCAATCATGTGCCTTTTACATTTAACCACTAGGACAGCCCACTGAAAGCACTTGAGTGCATGCATATCAAGATTTTTCTTTATCAATCCTTTAGTCTTTACCAAGATGCCCCCACCATCACCATTTTAGCTTTATCTTCAAATCTGCATAGAAGCCACCTTCATTAGTTGCTCTGAGATGCCTTCTCTGTGAGCAGTGCTCTGAGATGTCTTTAAAATTTTCAAAGTAACTTTTTGACCTTTAGTCAAACGTCATCCAAAAAAAATTTAATTAGTTAAAATCATGTTTAAGATATAAAAAAAAAAAAACTAATTCAAGCACCCTTACCAGTATTCTATAGTCGATCAAATTGAATGGGAAAAGTATCGAGAAGAATTATTATGGCCCTCTCTTCTCCAAAAGATGTTCTGGTGTTTAATTTTGTGGTTGCTGGCAGTTTATAGAAGTTGGAATGTATTTCTTATTACTATAAATAATGCTCTATTCTCTCATAGAATCAATCCATCTTGTAAGGTTCATTGGCAACAAAATGTATGAGTTAGTCAAATGGCAAATAGAGCAATGTAATCTCAAAAGTTTTTAGTTTTTTTCAGATCAACCACATGTGGGAGTGAGATTCGAACCTTTGATGTTTGGTCAAGGTATCTTGCCTTAACTTGGACTGACAAAAATTTATAGTTTATGAGATTAAACTGTTGTAGTTGTCTATTAAGATGTTAAATATTTTG

mRNA sequence

AAAAAAAAAAAATGTCAAGCTTTCCCTCTCTTTATTTTCCAACATTTTTCACATCGCGCTTCTGAAATTCATTCCGAAGAAACCGAAGTGGTCGCACGCTCCCTAAATTTCCCAAGCTTTCCCGCTCTTTACCTTTTGCCGCAGAGCCATGGTGTACATTGCCTCATGGGACGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCACGCGGTACAACATTAAGTATCGGCACTGCGATGGGAAACTGGTTCTCAAGGTCACCGATAACCGTGAGTGTCTCAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCGCACTGATGGCCCGGGGACCTGATGTGGATATATCGGAAGTCACAGGCAAGGAGCAGGCTGATGCACAGCCAACCAAGAAAGGGAGGGGGAGGAAGCAATGACTTCTCATTGACTACTGCACGCATAGATCAACCACATGTGGGAGTGAGATTCGAACCTTTGATGTTTGGTCAAGGTATCTTGCCTTAACTTGGACTGACAAAAATTTATAGTTTATGAGATTAAACTGTTGTAGTTGTCTATTAAGATGTTAAATATTTTG

Coding sequence (CDS)

ATGGTGTACATTGCCTCATGGGACGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCACGCGGTACAACATTAAGTATCGGCACTGCGATGGGAAACTGGTTCTCAAGGTCACCGATAACCGTGAGTGTCTCAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCGCACTGATGGCCCGGGGACCTGATGTGGATATATCGGAAGTCACAGGCAAGGAGCAGGCTGATGCACAGCCAACCAAGAAAGGGAGGGGGAGGAAGCAATGA

Protein sequence

MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ

Homology

[Close]

BLAST of CmaCh02G017720 vs. ExPASy Swiss-Prot
Match: Q9SMU7 (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.9e-47
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ 104
           KMEKLNNIFF LMARGPDVD+SEVTGKEQ + QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]

BLAST of CmaCh02G017720 vs. ExPASy Swiss-Prot
Match: O04438 (Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 87/103 (84.47%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAK
Sbjct: 1   MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ 104
           KMEKLNNIFFALM RGPDVDISEV+GKEQA+ Q  KKGRGR+Q
Sbjct: 61  KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103

[Close]

BLAST of CmaCh02G017720 vs. ExPASy Swiss-Prot
Match: Q55GL2 (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 GN=srp9 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 2  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKK 61
          +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct: 1  MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query: 62 MEKLNNIFFAL 73
          ++++N++FF L
Sbjct: 61 IDQINSLFFRL 71

[Close]

BLAST of CmaCh02G017720 vs. ExPASy Swiss-Prot
Match: P21262 (Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
          M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD K
Sbjct: 1  MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60

Query: 61 KMEKLNNIFFALM 74
          K+EK ++    LM
Sbjct: 61 KIEKFHSQLMRLM 73

[Close]

BLAST of CmaCh02G017720 vs. ExPASy Swiss-Prot
Match: P49458 (Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 6  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query: 66 NNIFFALM 74
          ++    LM
Sbjct: 66 HSQLMRLM 73

[Close]

BLAST of CmaCh02G017720 vs. TAIR 10
Match: AT3G49100.1 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-48
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ 104
           KMEKLNNIFF LMARGPDVD+SEVTGKEQ + QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

The following BLAST results are available for this feature:

BLAST of CmaCh02G017720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMU7	1.9e-47	87.38	Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP...	[more]
O04438	1.8e-45	84.47	Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1	[more]
Q55GL2	3.8e-16	49.30	Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 G...	[more]
P21262	1.5e-12	45.21	Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=S...	[more]
P49458	1.5e-12	48.53	Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 S...	[more]

BLAST of CmaCh02G017720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49100.1	1.3e-48	87.38	Signal recognition particle, SRP9/SRP14 subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039432	SRP9 domain	PFAM	PF05486	SRP9-21	coord: 5..66 e-value: 1.4E-10 score: 41.4
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	3.30.720.10	Signal recognition particle alu RNA binding heterodimer, srp9/1	coord: 2..83 e-value: 3.6E-35 score: 121.6
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	SUPERFAMILY	54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 5..79
IPR008832	Signal recognition particle, SRP9 subunit	PIRSF	PIRSF017029	SRP9	coord: 1..97 e-value: 5.5E-39 score: 130.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..97
None	No IPR available	PANTHER	PTHR12834:SF13	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	coord: 1..103
IPR039914	Signal recognition particle SRP9	PANTHER	PTHR12834	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G017720.1	CmaCh02G017720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045900	negative regulation of translational elongation
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding