CmaCh02G017580 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G017580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	bet1-like SNARE 1-1
Location	Cma_Chr02: 9830135 .. 9832339 (+)
RNA-Seq Expression	CmaCh02G017580
Synteny	CmaCh02G017580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGCCAGAAGGTTTTTCTTGAATCTTTCAATCTTTATCTTTGTTCTGCAGGCCATTTAAGTATCTTTCCTATCGAGCAAACCACGCGTGACGTCAGTTACTTGTTTGTGTGAAATTTACATTTACGATTCAATGTTGTGTTGCTATGTTATTGGCTACTGGATCTCGATAGACCGATAGCTCGATAAATCTGAGTCCGTATCTGTAGAAGGGTTCAATGAGTAATTCCAAGTTTTGGGACTTTACTTCTATTATTAGAACTGAATTCTCTTGAGGAATGTTTCAGTCCAGATGCCTTAGAACCTATACCTTTTATTAGCAGGTGATTTTAGAATGACCACATTGATTCTATAGGGCTCGGGTTTTTAATCATTTTTAAGCATTCTTCTTTCTGTTTAAGACTCTTCATACTGATGTAGTTGTGAAATTCAAGATCTCTATTCTATAGATTGGTAACTTTTGCCCCTTTATGTATTGCTATGGCTTTCTATGCGTGTACTTGTATAAGTCGTACTGTTAAGTGATTTAACATTAACAACTTATATCGTTTTGGATAATTGTCTACTAATCCAGAATTATCAGGATGTACTCAATTATCGAAGATAAATCATGGTGACATGTTTATGGTGGAAATAAACTTTATTTCTTATATTTTAATTGATCTTTGCAATGAGTGTGGACATTTACTGATTTTTGAATCTTTAGTTCTCAATTCTTTGTTAAACTTTTAGACGAAATACAATTTACTTTCCCTCGTGCACTTATATGCACATGCACCCTTGATAGTTGAATGGAAGTTCTTAAATTCATTTTTTTAATCAAAAACTGAAGAATGTATTTTTTAGTACCAAGTTGATTTTTATGAACTGAACCTTAGGTTGATCTTGCTATGTGCTGGTCGTTCTTCTTGTAATAGTATCTCTTGGAGTGTAGGGAACTACGTAACAATAGGGTTTCTCTCTTTGATGGCATTGAGGAGGGTGGTGTTAGGGCCTCATCTTCATACTCCTCCCATGAAATTGAGGAACAGGATAATGAAACAGCATTGGAAGGCTTGCAAGACAGAGTCCTTCTATTGAAAAGGGTATTTAATTTCTTACCCAGTCTTAGTCACTAATCTTTGATGATTGAGTCGGTAGAAACAGAGAAAGAATTCCCACCTATAACATTATGCAATAATTGTTGAGACCGAGATCTGCACCTACAATTTGCTGCAATTATTGTCGAGAATCAACTCTGCACGTAGAATATGTTGCAATTATTGTGAACAAATTCTGCACCTATAATATGCTGCAATTTATTTTTGAGAACATAGAGGATGAAAATACTTTCCAACTTGTGATTGTATATTGTTCAAGAAAAACACACGAGGGGTTTTATTACTAAATATATATGATTGATAGAAAACATAAACTATGCTATTTTTGAAGCAAAGAAATGGTAATGACGGCCGAGAACGAAATATTCTGTTTCCTGAATCGCATTCAAATTGAAAGGTGTTATTTCAACAGTTGACAGGTGACATAAATGAGGAGGTGGAGAGTCATAACCGCATACTGGATAGAATGGTATTATGTCAACTCAAGTGTCGTACGCAGTTCTTAGTGTTATTATCAACAGAGAACTAATTTCTTGCATGTTTTGGCTCAGGGTAATGATATGGATTCATCCAGAGGAGTGTTGTCGGGCACTATGGATCGATTCAAGACGGTATTGCCATACACAAGAACAATTCATTCCACTCTTTCGATACTCCTTTTCATCATTTTTTACATTAATTTCAATATGTTTAGGTATTTGATCCGAAGTCGAGCCCGAAGATGTTCTCGCTAGTCGTACTTTTCGTGGCAATTTTCTTCATTGTGTACTATCTCACAAGGTAATTCTTCCATTTGGATATCATCAAAAGAAGTCGAGCTTGGGCTCTGGATGGAAGACAATGATCAGCACTGCTGCTTAGTTCTATGAGAGTATTAGTTGTAACATTGGCATAGCTGTTCTGTTGATGCCTGTGTGAATATGTTTTCCTTGTGTACCAAAATTAAAGTTGGAACCAGTTTGGAACCAAAATATCATCTGCAGCTCTCCATTAAGCTGACATTGATGAATATAATCAGCAAACCAGTTTGTTACATCAGAGTTTTATCTGCCTTCCCTGATTAGATAGGTAACATTTTTATTTAATTTTTCTGTCGAATTCAT

mRNA sequence

ATGAACGCCAGAAGGGAACTACGTAACAATAGGGTTTCTCTCTTTGATGGCATTGAGGAGGGTGGTGTTAGGGCCTCATCTTCATACTCCTCCCATGAAATTGAGGAACAGGATAATGAAACAGCATTGGAAGGCTTGCAAGACAGAGTCCTTCTATTGAAAAGGGTGTTATTTCAACAGTTGACAGGTGACATAAATGAGGAGGTGGAGAGTCATAACCGCATACTGGATAGAATGGGTAATGATATGGATTCATCCAGAGGAGTGTTGTCGGGCACTATGGATCGATTCAAGACGGTATTTGATCCGAAGTCGAGCCCGAAGATGTTCTCGCTAGTCGTACTTTTCGTGGCAATTTTCTTCATTGTGTACTATCTCACAAGGTAATTCTTCCATTTGGATATCATCAAAAGAAGTCGAGCTTGGGCTCTGGATGGAAGACAATGATCAGCACTGCTGCTTAGTTCTATGAGAGTATTAGTTGTAACATTGGCATAGCTGTTCTGTTGATGCCTGTGTGAATATGTTTTCCTTGTGTACCAAAATTAAAGTTGGAACCAGTTTGGAACCAAAATATCATCTGCAGCTCTCCATTAAGCTGACATTGATGAATATAATCAGCAAACCAGTTTGTTACATCAGAGTTTTATCTGCCTTCCCTGATTAGATAGGTAACATTTTTATTTAATTTTTCTGTCGAATTCAT

Coding sequence (CDS)

ATGAACGCCAGAAGGGAACTACGTAACAATAGGGTTTCTCTCTTTGATGGCATTGAGGAGGGTGGTGTTAGGGCCTCATCTTCATACTCCTCCCATGAAATTGAGGAACAGGATAATGAAACAGCATTGGAAGGCTTGCAAGACAGAGTCCTTCTATTGAAAAGGGTGTTATTTCAACAGTTGACAGGTGACATAAATGAGGAGGTGGAGAGTCATAACCGCATACTGGATAGAATGGGTAATGATATGGATTCATCCAGAGGAGTGTTGTCGGGCACTATGGATCGATTCAAGACGGTATTTGATCCGAAGTCGAGCCCGAAGATGTTCTCGCTAGTCGTACTTTTCGTGGCAATTTTCTTCATTGTGTACTATCTCACAAGGTAA

Protein sequence

MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRVLFQQLTGDINEEVESHNRILDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYYLTR

Homology

[Close]

BLAST of CmaCh02G017580 vs. ExPASy Swiss-Prot
Match: Q9M2J9 (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana OX=3702 GN=BET11 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.1e-42
Identity = 92/128 (71.88%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRVLFQQ 60
           MN RRE R  R SLFDGIEEGG+RA+SSY SHEI E +NE ALEGLQDRV+LLKR     
Sbjct: 1   MNPRREPRGGRSSLFDGIEEGGIRAASSY-SHEINEHENERALEGLQDRVILLKR----- 60

Query: 61  LTGDINEEVESHNRILDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIF 120
           L+GDINEEV++HNR+LDRMGNDMDSSRG LSGTMDRFKTVF+ KSS +M +LV  FV +F
Sbjct: 61  LSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLF 120

Query: 121 FIVYYLTR 129
            ++YYLTR
Sbjct: 121 LVIYYLTR 122

[Close]

BLAST of CmaCh02G017580 vs. ExPASy Swiss-Prot
Match: Q94CG2 (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana OX=3702 GN=BET12 PE=2 SV=4)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-30
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MNARRELRNNRVSLF---DGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRVL 60
           MN RRE R +R SLF   DG+EEG +RASSSY+    +E+DN+ ALE LQDRV  LKRV 
Sbjct: 1   MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH---DERDNDEALENLQDRVSFLKRV- 60

Query: 61  FQQLTGDINEEVESHNRILDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFV 120
               TGDI+EEVE+HNR+LD++GN MDS+RG++SGT++RFK VF+ KS+ K   L+  FV
Sbjct: 61  ----TGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFV 120

Query: 121 AIFFIVYYLTR 129
            +F I+YYL R
Sbjct: 121 LLFLIMYYLIR 123

[Close]

BLAST of CmaCh02G017580 vs. ExPASy Swiss-Prot
Match: O35152 (BET1-like protein OS=Rattus norvegicus OX=10116 GN=Bet1l PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 35/105 (33.33%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 24  RASSSYSSHEIEEQDNETALEGLQDRVLLLKRVLFQQLTGDINEEVESHNRILDRMGNDM 83
           RA SS +  EI +++N+   + L  +V  LK      L  DI+ + E  NR LD M +D 
Sbjct: 6   RAQSSGAVEEIVDRENKRMADSLASKVTRLK-----SLALDIDRDTEDQNRYLDGMDSDF 65

Query: 84  DSSRGVLSGTMDRFKTVFDPKSSPK--MFSLVVLFVAIFFIVYYL 127
            S  G+L+G++ RF TV       +  +  + V+ +  FFI+ YL
Sbjct: 66  TSVTGLLTGSVKRFSTVARSGRDTRKLLCGMAVVLIVAFFILSYL 105

[Close]

BLAST of CmaCh02G017580 vs. ExPASy Swiss-Prot
Match: O35153 (BET1-like protein OS=Mus musculus OX=10090 GN=Bet1l PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 24  RASSSYSSHEIEEQDNETALEGLQDRVLLLKRVLFQQLTGDINEEVESHNRILDRMGNDM 83
           RA SS +  +I +++N+   + L  +V  LK      L  DI+ + E  NR LD M +D 
Sbjct: 6   RAQSSGAVEDILDRENKRMADSLASKVTRLK-----SLALDIDRDTEDQNRYLDGMDSDF 65

Query: 84  DSSRGVLSGTMDRFKTVF-DPKSSPKMF--SLVVLFVAIFFIVYYLTR 129
            S  G+L+G++ RF T+    + + K+     VVL VA F + Y L+R
Sbjct: 66  TSVTGLLTGSVKRFSTMARSGRDNRKLLCGMAVVLIVAFFILSYLLSR 108

[Close]

BLAST of CmaCh02G017580 vs. ExPASy Swiss-Prot
Match: Q5RBX2 (BET1-like protein OS=Pongo abelii OX=9601 GN=BET1L PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04
Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 24  RASSSYSSHEIEEQDNETALEGLQDRVLLLKRVLFQQLTGDINEEVESHNRILDRMGNDM 83
           RA S  +  EI +++N+   + L  +V  LK      L  DI+++ E  NR LD M +D 
Sbjct: 6   RAQSPGAVEEILDRENKRMADNLASKVTRLK-----SLALDIDKDAEDQNRYLDGMDSDF 65

Query: 84  DSSRGVLSGTMDRFKTVF-DPKSSPKMF--SLVVLFVAIFFIVYYLTR 129
            S  G+L+G++ RF T+    + + K+     V L VA F + Y+L+R
Sbjct: 66  TSMTGLLTGSVKRFSTMARSGRDNRKLLCGMAVGLIVAFFILSYFLSR 108

[Close]

BLAST of CmaCh02G017580 vs. TAIR 10
Match: AT3G58170.1 (BET1P/SFT1P-like protein 14A )

HSP 1 Score: 171.8 bits (434), Expect = 3.6e-43
Identity = 92/128 (71.88%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRVLFQQ 60
           MN RRE R  R SLFDGIEEGG+RA+SSY SHEI E +NE ALEGLQDRV+LLKR     
Sbjct: 1   MNPRREPRGGRSSLFDGIEEGGIRAASSY-SHEINEHENERALEGLQDRVILLKR----- 60

Query: 61  LTGDINEEVESHNRILDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIF 120
           L+GDINEEV++HNR+LDRMGNDMDSSRG LSGTMDRFKTVF+ KSS +M +LV  FV +F
Sbjct: 61  LSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLF 120

Query: 121 FIVYYLTR 129
            ++YYLTR
Sbjct: 121 LVIYYLTR 122

[Close]

BLAST of CmaCh02G017580 vs. TAIR 10
Match: AT4G14455.1 (Target SNARE coiled-coil domain protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-31
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MNARRELRNNRVSLF---DGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRVL 60
           MN RRE R +R SLF   DG+EEG +RASSSY+    +E+DN+ ALE LQDRV  LKRV 
Sbjct: 1   MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH---DERDNDEALENLQDRVSFLKRV- 60

Query: 61  FQQLTGDINEEVESHNRILDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFV 120
               TGDI+EEVE+HNR+LD++GN MDS+RG++SGT++RFK VF+ KS+ K   L+  FV
Sbjct: 61  ----TGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFV 120

Query: 121 AIFFIVYYLTR 129
            +F I+YYL R
Sbjct: 121 LLFLIMYYLIR 123

The following BLAST results are available for this feature:

BLAST of CmaCh02G017580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J9	5.1e-42	71.88	Bet1-like SNARE 1-1 OS=Arabidopsis thaliana OX=3702 GN=BET11 PE=1 SV=1	[more]
Q94CG2	2.0e-30	58.02	Bet1-like SNARE 1-2 OS=Arabidopsis thaliana OX=3702 GN=BET12 PE=2 SV=4	[more]
O35152	1.1e-04	33.33	BET1-like protein OS=Rattus norvegicus OX=10116 GN=Bet1l PE=1 SV=1	[more]
O35153	1.4e-04	34.26	BET1-like protein OS=Mus musculus OX=10090 GN=Bet1l PE=3 SV=1	[more]
Q5RBX2	3.2e-04	33.33	BET1-like protein OS=Pongo abelii OX=9601 GN=BET1L PE=3 SV=1	[more]

BLAST of CmaCh02G017580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58170.1	3.6e-43	71.88	BET1P/SFT1P-like protein 14A	[more]
AT4G14455.1	1.4e-31	58.02	Target SNARE coiled-coil domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.110		coord: 41..108 e-value: 8.7E-11 score: 43.6
None	No IPR available	PANTHER	PTHR12791:SF46	BET1-LIKE SNARE 1-1	coord: 1..128
None	No IPR available	SUPERFAMILY	58038	SNARE fusion complex	coord: 29..100
IPR039897	BET1-like protein	PANTHER	PTHR12791	GOLGI SNARE BET1-RELATED	coord: 1..128
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 58..100 score: 9.591654
IPR039899	BET1, SNARE domain	CDD	cd15853	SNARE_Bet1	coord: 36..99 e-value: 5.73137E-17 score: 67.5278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G017580.1	CmaCh02G017580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0030173	integral component of Golgi membrane