CmaCh02G016210 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G016210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCCH domain-containing protein 12-like isoform X2
Location	Cma_Chr02: 9197161 .. 9199765 (-)
RNA-Seq Expression	CmaCh02G016210
Synteny	CmaCh02G016210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCGGGCTGTCGTTTCCTGATATTTGTCTTTCAAGTTATCTCAGCATTTTTATCGCGCGGTCCAAATCTAACCTCTTCTTCTACTCTATCTATATTTCCTTCGACCTTTGAACCACACGAGCCTTGTTTTCCGCTCGCTTGTTCTTATTTTTCCCTTTTGTAATATTTATGATGCTCTTAGATCTGTCCGATCTTCCTACTAACTTTCTCTTCCACTTCTCCTCGATCTGTTTTTTACTTTCTTTTCTCATTTCTCCACAAACTTCTTCCATTCTGTAATGAGTCGTTTTTGAGCTTTTCAACTTTCACGAGCTGATGTTCTGTCGAGTTTAAAGAAACCCATTTCCTAGAAATTGGAAAAACTGTAGCTTTTGTTTGATTCAGTGCCCATGTTTTTTCAATTAGGGTTTTCTGCGTGGCACTTTGATGATTTTGTAGCTCTCTGGAGGTAAGAATTTCTGGGTTTTTTTTTCGTGGTGAGTGAAATTGTTTGGAATGGATTATAATGGGGGAAACGTAGTCCATGTGATTCCCGGGACGAGCAGCGAGAATTGGCCTGGCGAAGTTTGGGCCACCGAAGACGAATACAGAGCTTGGAACAATGGCGTTGATGGGTGTGTCGATACGCCCTCGAATTCGAGTTATGATCAAAGGCAATCCCAAAGCCGGTCCGGCAGCGAACCCCCAAATAAGAAATCAAGAAGCTCCCAGGATGTTACGTCCTCGAATCGATCAAAAGCGATAGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTCCGCGCTGGAACCTGCCCTTACATCACCAATTGCAATTTTGCTCACAGCATTGAGGAGCTTAGGCGGCCACCACCGAATTGGCAGGTATTAGGTTTGGTTCTTAGTTAATATTTAATCTTTGTTATGTTCTCTGTTTAATTGTTAGCTTGATAGCTGAAATTTCTTGTTGGGTAGTGTAGTTCGTAGTTCGTTCTTTAGCTTAGAGTTCAGCCATTTAATTACTGCTATACATTGGTATTTATGCTTCCTTTTGTACACAGAATTGGATGAATTGAGTATCATGAGTTCCTCATTGCATTGAGTATTGTTAGCAGGAAATTGTGGCCGCCCATGAGGAAGAAAAGGCGGTATTTTTAGAGCCTAGGGAGGAATTTCAGATACCTTCACTTGGGACATCAAATTTTGGTTCCGAGTCGCAGAGGTCATATAAAGGACGACATTGCAAGAAGTTTTACACCGAGGAGGGGTGTCCATATGGGGATGGTTGTACATTTCTTCACGACGAGCAGTCGAAGAATCGAGAGAGTGTGGCAATAAGCCTGGGTCCTGGTGGCTACAGTGGTGGCGGATCAGGAAATGGATCAAACACTAAGCCTTCGAATTGGAAAACAAGGATATGTAACAAGTGGGAGTTGACGGGATATTGTCCATTCGGAAACAAATGTCATTTTGCTCATGGTGCTGCTGGTATGTTTTCTCATTCCTTCGTTAATGAAGTTGTTGACTATACAGAAAAATTCTGAATCAATTTCAACCCTTCTTTTGGTTGTTAGTATAGTTTCCATCATCTGTTCAGTCGCTTAATCTGTCAGCACTCTAAGAATCCCTGGGTTAAGCGTTTTAATAGAAAGTGCTCTTACCATGCCCCATAGGATACATCTGCTCAATCTCGGTTGACTTTTGTTCGAACAATGGTTTCATTATGAGATCCACATCGGTTGGAGAAGGAAACGAAGCATTAAGGGTGTAGAAACCTTTCTCTAGTAGATTTGTTTTAGAACTTTAAAGAAGAGCTAAAAAAGAACCATATCTACTGACGGTGGGCTTAGGTTGTTACAAATGGTATTAGAGTCAAGACACCGGGCGGTGGCACGGTGTGCCAGCGAGACGTTGGGCCCAAGGGGGTGGATTTTGAGATCTCACATTGAAGAACGAAATATTTCTTATAAGGGTGTGGAAACCAGCTGACACATTTTAAAACCAGATGGAAAGCCTTACATTTTCTTTTGTATTTTCCAGTGGCTTAGATTTTGAGCCTATTCCATTTACTCTCCATTGCGATTTGGCATGCATTACTCTGTTTTGTGTTTCCACTTTCAAGACTCCAAAATCAATTGATTGCAAAGATATCTAACTAAGCTTCAATTCTTTTTTATGATTTTTCATGCTTTGTTTCTCCGAGTAATTGTCATTTATCTGAACTTTGATATAGTCATATAGGTCGAGTCAGTTAATCGAGTAGATTGAAAAACATAAGCATGTAGTAGTGTCTAGAGTTCTTTAGTTTTAGTGGTTTTAGACTTATACTTCGAATTAACCACAGAATTGCACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCTGCTCCTCCTGACCAGAAGCAGGGAGTATTACCGAAAGCTCCTGGCGATACAGTGGTTGCTTCTGTTCCTTCGGTTCCCCATTCAGACGTTTATCATGTCATGATTCCATCTCAGAGGTCAACCATTGTAATTCAAAGGTCAGGGCAGAGAACTCATCAGAAATGGAAGGGGCCCGATAAAATCAGTAGGATATATGGTGACTGGATCGACGACAACGAATAA

mRNA sequence

CCTCGGGCTGTCGTTTCCTGATATTTGTCTTTCAAGTTATCTCAGCATTTTTATCGCGCGGTCCAAATCTAACCTCTTCTTCTACTCTATCTATATTTCCTTCGACCTTTGAACCACACGAGCCTTGTTTTCCGCTCGCTTGTTCTTATTTTTCCCTTTTGTAATATTTATGATGCTCTTAGATCTGTCCGATCTTCCTACTAACTTTCTCTTCCACTTCTCCTCGATCTGTTTTTTACTTTCTTTTCTCATTTCTCCACAAACTTCTTCCATTCTGTAATGAGTCGTTTTTGAGCTTTTCAACTTTCACGAGCTGATGTTCTGTCGAGTTTAAAGAAACCCATTTCCTAGAAATTGGAAAAACTGTAGCTTTTGTTTGATTCAGTGCCCATGTTTTTTCAATTAGGGTTTTCTGCGTGGCACTTTGATGATTTTGTAGCTCTCTGGAGGTAAGAATTTCTGGGTTTTTTTTTCGTGGTGAGTGAAATTGTTTGGAATGGATTATAATGGGGGAAACGTAGTCCATGTGATTCCCGGGACGAGCAGCGAGAATTGGCCTGGCGAAGTTTGGGCCACCGAAGACGAATACAGAGCTTGGAACAATGGCGTTGATGGGTGTGTCGATACGCCCTCGAATTCGAGTTATGATCAAAGGCAATCCCAAAGCCGGTCCGGCAGCGAACCCCCAAATAAGAAATCAAGAAGCTCCCAGGATGTTACGTCCTCGAATCGATCAAAAGCGATAGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTCCGCGCTGGAACCTGCCCTTACATCACCAATTGCAATTTTGCTCACAGCATTGAGGAGCTTAGGCGGCCACCACCGAATTGGCAGGAAATTGTGGCCGCCCATGAGGAAGAAAAGGCGGTATTTTTAGAGCCTAGGGAGGAATTTCAGATACCTTCACTTGGGACATCAAATTTTGGTTCCGAGTCGCAGAGGTCATATAAAGGACGACATTGCAAGAAGTTTTACACCGAGGAGGGGTGTCCATATGGGGATGGTTGTACATTTCTTCACGACGAGCAGTCGAAGAATCGAGAGAGTGTGGCAATAAGCCTGGGTCCTGGTGGCTACAGTGGTGGCGGATCAGGAAATGGATCAAACACTAAGCCTTCGAATTGGAAAACAAGGATATGTAACAAGTGGGAGTTGACGGGATATTGTCCATTCGGAAACAAATGTCATTTTGCTCATGGTGCTGCTGAATTGCACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCTGCTCCTCCTGACCAGAAGCAGGGAGTATTACCGAAAGCTCCTGGCGATACAGTGGTTGCTTCTGTTCCTTCGGTTCCCCATTCAGACGTTTATCATGTCATGATTCCATCTCAGAGGTCAACCATTGTAATTCAAAGGTCAGGGCAGAGAACTCATCAGAAATGGAAGGGGCCCGATAAAATCAGTAGGATATATGGTGACTGGATCGACGACAACGAATAA

Coding sequence (CDS)

ATGGATTATAATGGGGGAAACGTAGTCCATGTGATTCCCGGGACGAGCAGCGAGAATTGGCCTGGCGAAGTTTGGGCCACCGAAGACGAATACAGAGCTTGGAACAATGGCGTTGATGGGTGTGTCGATACGCCCTCGAATTCGAGTTATGATCAAAGGCAATCCCAAAGCCGGTCCGGCAGCGAACCCCCAAATAAGAAATCAAGAAGCTCCCAGGATGTTACGTCCTCGAATCGATCAAAAGCGATAGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTCCGCGCTGGAACCTGCCCTTACATCACCAATTGCAATTTTGCTCACAGCATTGAGGAGCTTAGGCGGCCACCACCGAATTGGCAGGAAATTGTGGCCGCCCATGAGGAAGAAAAGGCGGTATTTTTAGAGCCTAGGGAGGAATTTCAGATACCTTCACTTGGGACATCAAATTTTGGTTCCGAGTCGCAGAGGTCATATAAAGGACGACATTGCAAGAAGTTTTACACCGAGGAGGGGTGTCCATATGGGGATGGTTGTACATTTCTTCACGACGAGCAGTCGAAGAATCGAGAGAGTGTGGCAATAAGCCTGGGTCCTGGTGGCTACAGTGGTGGCGGATCAGGAAATGGATCAAACACTAAGCCTTCGAATTGGAAAACAAGGATATGTAACAAGTGGGAGTTGACGGGATATTGTCCATTCGGAAACAAATGTCATTTTGCTCATGGTGCTGCTGAATTGCACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCTGCTCCTCCTGACCAGAAGCAGGGAGTATTACCGAAAGCTCCTGGCGATACAGTGGTTGCTTCTGTTCCTTCGGTTCCCCATTCAGACGTTTATCATGTCATGATTCCATCTCAGAGGTCAACCATTGTAATTCAAAGGTCAGGGCAGAGAACTCATCAGAAATGGAAGGGGCCCGATAAAATCAGTAGGATATATGGTGACTGGATCGACGACAACGAATAA

Protein sequence

MDYNGGNVVHVIPGTSSENWPGEVWATEDEYRAWNNGVDGCVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVFLEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDGCTFLHDEQSKNRESVAISLGPGGYSGGGSGNGSNTKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGGLMETETRDSSSAPPDQKQGVLPKAPGDTVVASVPSVPHSDVYHVMIPSQRSTIVIQRSGQRTHQKWKGPDKISRIYGDWIDDNE

Homology

[Close]

BLAST of CmaCh02G016210 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 2.7e-114
Identity = 233/394 (59.14%), Postives = 261/394 (66.24%), Query Frame = 0


Query: 4   NGGNVVHVIPGTS--SENW-----PGEVWATEDEY-RAWNNGVDGCVDTPSNSSYDQRQS 63
           +GG+VVHVIP  +   +NW        VWATED+Y RAW          P N+S D    
Sbjct: 8   SGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDYNRAW-------AMNPDNTSGD---- 67

Query: 64  QSRSGSEPPNKKSRSSQDVTS-------SNRSKAIGKMFFKTKLCCKFRAGTCPYITNCN 123
                + PPNKK+R S   +S       SNR+KAIGKMFFKTKLCCKFRAGTCPYITNCN
Sbjct: 68  ----NNGPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCN 127

Query: 124 FAHSIEELRRPPPNWQEIVAAHEEEK---------AVFLEPREEFQIPSLGTSNFGSESQ 183
           FAH++EELRRPPPNWQEIVAAHEEE+         +V   PREEFQIPSL +S   +ES 
Sbjct: 128 FAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSST--AESG 187

Query: 184 RSYKGRHCKKFYTEEGCPYGDGCTFLHDEQSKNRESVAISLGPGGY-------------- 243
           RS+KGRHCKKFYTEEGCPYG+ CTFLHDE S+NRESVAISLGPGGY              
Sbjct: 188 RSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVG 247

Query: 244 ------------SGGGSGNGSN---TKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAEL 303
                        GGGSG+GS     KPSNWKTRICNKWE+TGYCPFG KCHFAHGAAEL
Sbjct: 248 GGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 307

Query: 304 HRYGGGLMETETRDSSSAPPDQKQGVL-PKAPGDTVVASVPSVPHS--DVYHVMIPSQR- 341
           HR+GGGL+E E +D  S  PD KQ V  PK   DT     P VPH+    YH  +  QR 
Sbjct: 308 HRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRA 367

[Close]

BLAST of CmaCh02G016210 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 3.0e-110
Identity = 216/386 (55.96%), Postives = 257/386 (66.58%), Query Frame = 0


Query: 1   MDYNGGNVVHVIP---------GTSSENWPGEVWATEDEYRA-WNNGVDGCVDTPSNSSY 60
           MDY   N +H+IP           +++     +WATED+Y + WN    G          
Sbjct: 1   MDYT--NAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDYNSQWNADGGG---------- 60

Query: 61  DQRQSQSRSGSE--PPNKKSR---SSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYIT 120
                 SR+GSE  PP KKSR     +   ++++S+AIGKMFFKTKLCCKFRAGTCPY+T
Sbjct: 61  ---GGSSRAGSEQPPPGKKSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVT 120

Query: 121 NCNFAHSIEELRRPPPNWQEIVAAHEEEKAVFLEPREEFQIPSLGTS------------N 180
           NCNFAH +EELR+PPPNWQEIVAAHEE      E REE QIP + +S             
Sbjct: 121 NCNFAHGMEELRKPPPNWQEIVAAHEEA----TEAREEHQIPIMTSSGPTAGGDAGCGGG 180

Query: 181 FGSESQRSYKGRHCKKFYTEEGCPYGDGCTFLHDEQSKNRESVAISLGP--GGYSGGGS- 240
            G  S R+YKGRHCKKFYT+EGCPYGD CTFLHDEQSK RESVAISL P  GG  GGGS 
Sbjct: 181 GGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSY 240

Query: 241 --------------GNGSNTKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGG 300
                         GNG   KPSNWKTRICNKWE+TGYCPFG+KCHFAHGAAELH+YGGG
Sbjct: 241 NSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGG 300

Query: 301 LMETETRDSSSAPPDQKQGVLPKAPGDTVVASVPSVPHSDVYHVMIPSQRSTIVIQRSG- 341
           L++ ++RD+++ P  ++  V  KAP +T  AS   +PH+DVYH+ + +QRSTI  QRSG 
Sbjct: 301 LVDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQ 360

[Close]

BLAST of CmaCh02G016210 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 9.3e-51
Identity = 136/325 (41.85%), Postives = 161/325 (49.54%), Query Frame = 0


Query: 24  VWATEDEY-RAWNNGVDGCVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKA 83
           VWATED+Y R W    D                    G+E P+KK+RSS        S  
Sbjct: 34  VWATEDDYSRVWAINSD--------------------GAESPSKKTRSSS-------SSE 93

Query: 84  IGKMFFKTKLCCKFRAGTCPY-ITNCNFAHSIEELR---RPPPNWQEIVAAHEEEKAVFL 143
           IGK FFKTKLC KFRAGTCPY  ++C+FAHS EELR    PPPNWQE V           
Sbjct: 94  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVT---------- 153

Query: 144 EPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDGCTFLHDEQSKNRESVAI 203
                                                            E S+NRES A+
Sbjct: 154 -------------------------------------------------EASRNRESFAV 213

Query: 204 SLGPGGYSGGGSGNGSNT-KPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGGL 263
           SLGP        GN + T K  NWKTRICNKW+ TGYCPFG+ CHFAHG +ELH +GGGL
Sbjct: 214 SLGP-------RGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGL 252

Query: 264 METETRDSSSAPPDQKQGVLPKAPGDTVVASVPSVPHSDVYHVMIPSQR--STIVIQRSG 323
           +E E +  +SA  D KQ    +   DTV + V            + SQR  S +  + +G
Sbjct: 274 VEGECKIGTSATLDTKQ----RGQVDTVTSLVSP---------GVSSQRTSSAVTQKPNG 252

Query: 324 QRTHQKWKGPDKISRIYGDWIDDNE 341
            RT +KWKGPDKISR+YGDWIDD E
Sbjct: 334 VRTQRKWKGPDKISRVYGDWIDDIE 252

[Close]

BLAST of CmaCh02G016210 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-36
Identity = 125/376 (33.24%), Postives = 170/376 (45.21%), Query Frame = 0


Query: 28  EDEYRAWNNG--VDGCVDTPSNSSYD-------QRQSQSRSGSEPPNKKSRSSQD----- 87
           +  Y  WN    +D   +  +N   D       Q QSQ     +P  K+ R   D     
Sbjct: 14  QSPYGGWNQTQMIDSMANPMNNEQGDLHSLSESQSQSQPSQQLQPALKRPRLVDDNLFNP 73

Query: 88  ------VTSSNR-----------SKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEEL 147
                  +SSN            +K    +F+KT++C KFRAGTC     CNFAH IE+L
Sbjct: 74  ASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDL 133

Query: 148 RRPPPNWQEIV----AAHEEEKAVFLEPREEFQIPSLG---TSNFGSESQRSYKGRHCKK 207
           R+PP NWQEIV    A  + E+    E   E + PSL     +N+  + +   + + C+K
Sbjct: 134 RQPPSNWQEIVGPPPAGQDRERE--RERERERERPSLAPVVNNNWEDDQKIILRMKLCRK 193

Query: 208 FYTEEGCPYGDGCTFLHDEQS-------KNRESVAISLG------PGGYSGG-------G 267
           F   E CPYGD C F+H++ S       K RES  IS+G      P   +         G
Sbjct: 194 FCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQG 253

Query: 268 S-------GNGSNTKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGGLMETET 327
           S        NG   K   WKTR+C K+++TG CPFG+KCHFAHG AELH   G     E 
Sbjct: 254 SIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVG---RVEG 313

Query: 328 RDSSSAPPDQKQGVLPKAPGDTVVASVPSVPHSDVYHVMIPSQRSTIVIQRSGQRTHQKW 339
              ++     KQ V+   P +   A  P           + +  S +  +   ++   KW
Sbjct: 314 EAMNAVASVNKQAVV---PANEAFAMKPI--------TQVTADSSGLNEEGRRKKCLLKW 373

[Close]

BLAST of CmaCh02G016210 vs. ExPASy Swiss-Prot
Match: Q7F8R0 (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-11
Identity = 57/182 (31.32%), Postives = 79/182 (43.41%), Query Frame = 0


Query: 163 KGRHCKKFYTEEGCPYGDGCTFLHD--------EQSKNRESVAISLGPGGYSGGGSGNGS 222
           K + C KF++  GCP+G+GC FLH          +  N    AI+  PG    G +    
Sbjct: 35  KSKPCTKFFSTSGCPFGEGCHFLHHFPGGYQAVAKMTNLGGPAIAPPPGRMPMGNAVPDG 94

Query: 223 NTKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGGLMETETRDSSSAPP--DQ 282
              P+  KTR+CNK+     C +G+KCHFAHG  EL +           DSS  PP   +
Sbjct: 95  PPTPT-VKTRLCNKYNTAEGCKWGDKCHFAHGERELGK-------PMLMDSSMPPPMGPR 154

Query: 283 KQGVLPKAPGDTVVASVP-SVPHSDVYHVMIPSQRSTIVIQRSGQRTHQKWKGPDKISRI 334
             G     P  +   S P S   S    + + +  +  +I R G  T Q       ISR+
Sbjct: 155 PTGHFAPPPMPSPAMSTPASFGASATAKISVDASLAGGIIGRGGVNTKQ-------ISRV 201

[Close]

BLAST of CmaCh02G016210 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 413.3 bits (1061), Expect = 1.9e-115
Identity = 233/394 (59.14%), Postives = 261/394 (66.24%), Query Frame = 0


Query: 4   NGGNVVHVIPGTS--SENW-----PGEVWATEDEY-RAWNNGVDGCVDTPSNSSYDQRQS 63
           +GG+VVHVIP  +   +NW        VWATED+Y RAW          P N+S D    
Sbjct: 8   SGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDYNRAW-------AMNPDNTSGD---- 67

Query: 64  QSRSGSEPPNKKSRSSQDVTS-------SNRSKAIGKMFFKTKLCCKFRAGTCPYITNCN 123
                + PPNKK+R S   +S       SNR+KAIGKMFFKTKLCCKFRAGTCPYITNCN
Sbjct: 68  ----NNGPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCN 127

Query: 124 FAHSIEELRRPPPNWQEIVAAHEEEK---------AVFLEPREEFQIPSLGTSNFGSESQ 183
           FAH++EELRRPPPNWQEIVAAHEEE+         +V   PREEFQIPSL +S   +ES 
Sbjct: 128 FAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSST--AESG 187

Query: 184 RSYKGRHCKKFYTEEGCPYGDGCTFLHDEQSKNRESVAISLGPGGY-------------- 243
           RS+KGRHCKKFYTEEGCPYG+ CTFLHDE S+NRESVAISLGPGGY              
Sbjct: 188 RSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVG 247

Query: 244 ------------SGGGSGNGSN---TKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAEL 303
                        GGGSG+GS     KPSNWKTRICNKWE+TGYCPFG KCHFAHGAAEL
Sbjct: 248 GGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 307

Query: 304 HRYGGGLMETETRDSSSAPPDQKQGVL-PKAPGDTVVASVPSVPHS--DVYHVMIPSQR- 341
           HR+GGGL+E E +D  S  PD KQ V  PK   DT     P VPH+    YH  +  QR 
Sbjct: 308 HRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRA 367

[Close]

BLAST of CmaCh02G016210 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 202.2 bits (513), Expect = 6.6e-52
Identity = 136/325 (41.85%), Postives = 161/325 (49.54%), Query Frame = 0


Query: 24  VWATEDEY-RAWNNGVDGCVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKA 83
           VWATED+Y R W    D                    G+E P+KK+RSS        S  
Sbjct: 34  VWATEDDYSRVWAINSD--------------------GAESPSKKTRSSS-------SSE 93

Query: 84  IGKMFFKTKLCCKFRAGTCPY-ITNCNFAHSIEELR---RPPPNWQEIVAAHEEEKAVFL 143
           IGK FFKTKLC KFRAGTCPY  ++C+FAHS EELR    PPPNWQE V           
Sbjct: 94  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVT---------- 153

Query: 144 EPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDGCTFLHDEQSKNRESVAI 203
                                                            E S+NRES A+
Sbjct: 154 -------------------------------------------------EASRNRESFAV 213

Query: 204 SLGPGGYSGGGSGNGSNT-KPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGGL 263
           SLGP        GN + T K  NWKTRICNKW+ TGYCPFG+ CHFAHG +ELH +GGGL
Sbjct: 214 SLGP-------RGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGL 252

Query: 264 METETRDSSSAPPDQKQGVLPKAPGDTVVASVPSVPHSDVYHVMIPSQR--STIVIQRSG 323
           +E E +  +SA  D KQ    +   DTV + V            + SQR  S +  + +G
Sbjct: 274 VEGECKIGTSATLDTKQ----RGQVDTVTSLVSP---------GVSSQRTSSAVTQKPNG 252

Query: 324 QRTHQKWKGPDKISRIYGDWIDDNE 341
            RT +KWKGPDKISR+YGDWIDD E
Sbjct: 334 VRTQRKWKGPDKISRVYGDWIDDIE 252

[Close]

BLAST of CmaCh02G016210 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-37
Identity = 125/376 (33.24%), Postives = 170/376 (45.21%), Query Frame = 0


Query: 28  EDEYRAWNNG--VDGCVDTPSNSSYD-------QRQSQSRSGSEPPNKKSRSSQD----- 87
           +  Y  WN    +D   +  +N   D       Q QSQ     +P  K+ R   D     
Sbjct: 14  QSPYGGWNQTQMIDSMANPMNNEQGDLHSLSESQSQSQPSQQLQPALKRPRLVDDNLFNP 73

Query: 88  ------VTSSNR-----------SKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEEL 147
                  +SSN            +K    +F+KT++C KFRAGTC     CNFAH IE+L
Sbjct: 74  ASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDL 133

Query: 148 RRPPPNWQEIV----AAHEEEKAVFLEPREEFQIPSLG---TSNFGSESQRSYKGRHCKK 207
           R+PP NWQEIV    A  + E+    E   E + PSL     +N+  + +   + + C+K
Sbjct: 134 RQPPSNWQEIVGPPPAGQDRERE--RERERERERPSLAPVVNNNWEDDQKIILRMKLCRK 193

Query: 208 FYTEEGCPYGDGCTFLHDEQS-------KNRESVAISLG------PGGYSGG-------G 267
           F   E CPYGD C F+H++ S       K RES  IS+G      P   +         G
Sbjct: 194 FCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQG 253

Query: 268 S-------GNGSNTKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGGLMETET 327
           S        NG   K   WKTR+C K+++TG CPFG+KCHFAHG AELH   G     E 
Sbjct: 254 SIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVG---RVEG 313

Query: 328 RDSSSAPPDQKQGVLPKAPGDTVVASVPSVPHSDVYHVMIPSQRSTIVIQRSGQRTHQKW 339
              ++     KQ V+   P +   A  P           + +  S +  +   ++   KW
Sbjct: 314 EAMNAVASVNKQAVV---PANEAFAMKPI--------TQVTADSSGLNEEGRRKKCLLKW 373

[Close]

BLAST of CmaCh02G016210 vs. TAIR 10
Match: AT3G12130.1 (KH domain-containing protein / zinc finger (CCCH type) family protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-09
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 202 PGGYSGGGSGNGSNTKP---SNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYG 255
           PGG  GGG G GS  KP   SN+KT+IC ++   G C FG++CHFAHG AEL + G
Sbjct: 192 PGGGLGGGGGMGSEGKPHPGSNFKTKICERFS-KGNCTFGDRCHFAHGEAELRKSG 246

[Close]

BLAST of CmaCh02G016210 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 50.4 bits (119), Expect = 3.2e-06
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 222 KTRICNKWELTGYCPFGNKCHFAHGAAEL 251
           KT +CNKW+ TG CP+G+ C FAHG  EL
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252

The following BLAST results are available for this feature:

BLAST of CmaCh02G016210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQM3	2.7e-114	59.14	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	3.0e-110	55.96	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q5PP65	9.3e-51	41.85	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LT81	2.2e-36	33.24	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7F8R0	4.2e-11	31.32	Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CmaCh02G016210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32360.1	1.9e-115	59.14	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	6.6e-52	41.85	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G19360.1	1.6e-37	33.24	Zinc finger (CCCH-type) family protein	[more]
AT3G12130.1	3.1e-09	55.36	KH domain-containing protein / zinc finger (CCCH type) family protein	[more]
AT1G68200.1	3.2e-06	62.07	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 87..113 e-value: 0.0035 score: 26.6 coord: 161..188 e-value: 1.0 score: 16.2 coord: 220..247 e-value: 6.3E-9 score: 45.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 88..112 e-value: 1.8E-5 score: 24.5 coord: 221..246 e-value: 1.1E-10 score: 41.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 87..114 score: 12.840159
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 220..248 score: 15.22499
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 161..189 score: 13.431672
None	No IPR available	GENE3D	4.10.1000.10		coord: 151..203 e-value: 1.2E-5 score: 27.2
None	No IPR available	GENE3D	4.10.1000.10		coord: 82..118 e-value: 4.8E-11 score: 43.8 coord: 213..252 e-value: 2.4E-15 score: 57.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..78
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 22..337
None	No IPR available	PANTHER	PTHR12547:SF136	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 22..337
IPR041367	E3 ligase, CCCH-type zinc finger	PFAM	PF18044	zf-CCCH_4	coord: 165..187 e-value: 1.0E-5 score: 25.2
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 217..251
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 160..189
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 85..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G016210.1	CmaCh02G016210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000976	transcription cis-regulatory region binding