CmaCh02G015090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G015090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr02: 8605657 .. 8609543 (+)
RNA-Seq Expression	CmaCh02G015090
Synteny	CmaCh02G015090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTGTGCGACTCGCTACAAAGTTTGGTGTTCTTTACTCGTAGGGTATCTTATTGTGTTGTAATTCTGGACAAATGATTGCCTCGTGAGTACATCTAAAGGGGTTTTCTTTTTTCTTCTTGATTGCCACTAAATGCTGCCCCTGTTTTGCATCTCTGTTTGTAAACAAAATTTTGAAACTATATTTATATGATTCTTATTTCATGTACCAATAAAATGATTTTTTTTTTCTCTATATAACATAGGTGGATGATGATTTGAACTTCCAATAATTAATTATTGAGTAATGTTCATGCTGGTAGTAGCATTGTCACTCGAGAAGAGGATTGCTCAAATAATTAATATATAATAAACCATTAAATTTGATATAAGGAGTGACTGGAAGGATTTTGTTGTATGAAAAAATAAAAAATACAAAAAAAAGCTATAAATGTAAATTATATTAATTATGAAATATTGACTGTGAAACAATCCATCCCTATATAATTTCTGAAAATATAATATTACATAATACAAGGCATCGAGCATCAACCACGCTATTGAAAGGCGTTTGGATATGGGCCTCATGGAGCCCACCAATGATCTATCGGGCTCAGCGTCTTTCATTGAATCCCAAAAGGCCCAATTTAGAAATCTGGCTGAAAGGCGTTTGGATATGGGCCTCATGGAGCCCACCAATGATCTATCGGGCTCAGCGGCTTTCATCGAATCCCGAAAAGGCCCAATTTAGAAATCTGGCTCCACCTGGTCCTTCTCGGCAAGGTGCTGTATCATCTTCTTCCGAATCGGGAGTTCTGTCATCGACTCAAAATGGCCGCCTCTTCTACTCCGTGTTTTCAACCGCAAATTATAACTTCTCAATCTCCGATCAGGTTCTTCCTCTCTCTTCTGGTTAACTGTTAAAATTGATGCTTTTCGCGACGCTTACCTGATTTTTTCTTGCTGTTTTTTGAATTTTGTAAGCCCTGCGACGAAGGTTTACTCGGGATTAAAGCTTCAATCTGCTAGTAGGCTTACTTTCCTTTCCTTCTCATGGTGTCATTCATCTATTTGTCCGCCCCTTAATTACGTATTGCTTTCCTTTGTTTTCGTTTTTTTTTAAAGGTCCATTTGGAGGAGCGAAACCTAATCTTACTGTTGAATTCTATGGAAAAGTTCATAAAAGTCTACAATCCAGGTAATTGCAGCTCTAGCTAAGCCTACATCCTAATTTCATTAATTTTCTGAGCTGGGAAGTTTATCCTTAAATATCCTGTTACATTCTGGTGATATTAATCAATTGAAAAGCTTGGACTTTCATAACATGCTATACTTTCAAGGATGAAGGAGTATAAAATTGTTAACTTATTTTCACATGGATCATTTGTTTTCTTCATGGAACATTTTCCTTGTTGTTTCAAAATCATGAGATATAATGGCAAGGAGTCTGGAGAGGTTGACTTGATATTCCTCCTTATTGAGCTTGGCTTAATGGTAATTGACATGTACCCTCTAATATTTTCCTGACATCTTTTTCCCTCAAATTGTAAAGTGAAACTTGTGATTATGGAGATTTAAGCCAATTATACCAGTTGTTGCTTCCTCTAATATTCTCTTGACATCTTTTTCCCTCAAATTTTCATATTTCCTTTCAATTAGACATGCATTCAAATTTTTCTTATCCCTTCTGATAACAAAAGCTAAAGAGAAGTAAAAGGAGAAGATATTCAGTTTTATCCTATCCTACATATATTCTTCTAATTCGTTACTTTACGTGCAGTACAAATAACAAAAAGGCATCCCGTATGCAGTTTCAGATGATGCCTATCGGGACACCAAGGGTGCCTTACAGAAATCCTGGCGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTTGTAAGTGATACATCTTCTTATGCACTTTTTGTGCAATACAGTCTAATGTCACTTGATATTTAATTACTCAGACTGAGCAAAAATACAGTTCAGCATTATGAGACTCACGAGTTCCAATGGGTATAATTATATCAAAGTAAACTGTTCTCTCCTATAAGTGTCCAATGTAAAAATCAACTTTTTTTTTTCTTTTTTTTTTTTTTTAAATAATATCTACTATATGAAGATTTTCCCCCATAATCTCTACGTTTTTCATGTGGCTAGTATCGAGAACGAGTTATTTTCATCGGGCAAAACATTGATGAAGAGTTTAGCAATCAAATTTTGGCCACCATGCTATATCTCGACAGCATTGAATCTTCCAAAGCACTCTATATGTACTTAAATGGTCCAGGTGGAGATGTGAGTTCAATCTTTTTTCTTTTTTGGGATAAATTCCATAATTGTCTGTTATATTTTCCTTTTATTGTGAATATCCTATTGGTTTGTTTAGCATTATTTTTCTGATGATATCATGATCTCTGCAGTTAACTCCAAGTTTGGCCATCTACGACACAATGCAGAGCTTGAAGAGTTCAGTACGTACCCATTGCGTGGGTTATGCCTATGATCTGGCAGCATTTCTTCTAGCAGCTGGAGAAAAGGTAAATACAGATTTTAGCTAGCATTGTCAAATAAAATTAGTACCGTAAGGCAAGGGATGTTGCTTGAAATATGACTTTGGAATTTGTCGGGAGTTCTTCTTCAGTATGGTAAAACGTATCCCTTATTTTTTTTCCAGTCAAATCAATTTTTGATCCATTTGAACAAATCTTAATGCAACCCGATCAATAAGTTTCTACCCTGAATTTGCATTGAATAAACTAGGCAACACCTTATTCCTTTTACCCAAATTTCCTTGGTGCACGAATTTTGCATCTTTTTTATGATAAGTAACGCGGTCTCCTTGCTCATCGACCTTCTATCTATTTGGCTGAACCTACTTATTTTCTTCATGTTCTTTTAAATCTAACAACACATTTCCTTATTATTAAGGGTCACCGCACTGCAATGCCTCTATCAAGAATTGCTTTACAATCCCCAGGTGGAGCTGCTCGTGGCCAGGTAACACTAATTTGTTTCATGTCATGCAAACTGATCGTATATGACTTTCTATAGGTTCTAAACATTTTTGTTTGAAAATCCTTTTGATAGGCTGATGATGTTCGAAACGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTTCAATGAGCTTTCTAAGAAAACAGGCCAGCCTGTTGAACAGGTCAGTTTGTCTGGCACCATGGCATACAATATCTTCATTCATAGTGTAACTTTCCACTACCAGACGTGAGTTATAACCCACATGACTTTTTGGTTTATGAAACATGAGGTTTTACAAACTTGCAAAAATTAACACATTCATAGTTCGCTAATGCCATTCTTGAATCTTACGTCAAATTAAACTTAAAATATTTCTCAGAAATACAACCTTCACACCTTGTAAATGGACAAATGCAGATTAACAAGGACTTGAGTCGAATGAAGCGATTTAATGCTCAGGCAGCTCTTGAGTATGGTCTTATCGACCGTATAGTCAGGCCAGCTCGCATTAAGGCCGATGCACCACGCAAGGATGATGGAGCAGGGCTTGGTTAGAGTAAGATTAATTATTGTCTTCACATTGGAAGTAGCACATGTTTGCTTTAGGTTTACATGGCACACAACTAAGTAATTAGAATTTATGTATGGAAGTTCAAATCTTGTTTTTCATCCATTAATTTAAATGGAAGCTCTGTGGAAATGGTATGAACTTTATTATTCTTTTCCCCGGAAGTATCTTCAATTAGGTAGATTGATTCAAATTTGGTTAGCATTTTAGTGGGAATTAAGTGATTGCAGCATTTGAAGGGAATATGAAGATTTTTCGAGGCCTAAAGAGGGGGGGTTCTTCGGAGAAATATGGAGATGGGAAGTTAAAAGAGAACCGTTTTCTCCC

mRNA sequence

ATGCCACTGTGCGACTCGCTACAAAGTTTGGTGTTCTTTACTCGTAGGGTATCTTATTGTGTTGTGCTGTATCATCTTCTTCCGAATCGGGAGTTCTGTCATCGACTCAAAATGGCCGCCTCTTCTACTCCGTGTTTTCAACCGCAAATTATAACTTCTCAATCTCCGATCAGCCCTGCGACGAAGGTTTACTCGGGATTAAAGCTTCAATCTGCTAGTCCATTTGGAGGAGCGAAACCTAATCTTACTGTTGAATTCTATGGAAAAGTTCATAAAAGTCTACAATCCAGTACAAATAACAAAAAGGCATCCCGTATGCAGTTTCAGATGATGCCTATCGGGACACCAAGGGTGCCTTACAGAAATCCTGGCGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTTTATCGAGAACGAGTTATTTTCATCGGGCAAAACATTGATGAAGAGTTTAGCAATCAAATTTTGGCCACCATGCTATATCTCGACAGCATTGAATCTTCCAAAGCACTCTATATGTACTTAAATGGTCCAGGTGGAGATTTAACTCCAAGTTTGGCCATCTACGACACAATGCAGAGCTTGAAGAGTTCAGTACGTACCCATTGCGTGGGTTATGCCTATGATCTGGCAGCATTTCTTCTAGCAGCTGGAGAAAAGGGTCACCGCACTGCAATGCCTCTATCAAGAATTGCTTTACAATCCCCAGGTGGAGCTGCTCGTGGCCAGGCTGATGATGTTCGAAACGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTTCAATGAGCTTTCTAAGAAAACAGGCCAGCCTGTTGAACAGATTAACAAGGACTTGAGTCGAATGAAGCGATTTAATGCTCAGGCAGCTCTTGAGTATGGTCTTATCGACCGTATAGTCAGGCCAGCTCGCATTAAGGCCGATGCACCACGCAAGGATGATGGAGCAGGGCTTGGTTAGAGTAAGATTAATTATTGTCTTCACATTGGAAGTAGCACATGTTTGCTTTAGGTTTACATGGCACACAACTAAGTAATTAGAATTTATGTATGGAAGTTCAAATCTTGTTTTTCATCCATTAATTTAAATGGAAGCTCTGTGGAAATGGTATGAACTTTATTATTCTTTTCCCCGGAAGTATCTTCAATTAGGTAGATTGATTCAAATTTGGTTAGCATTTTAGTGGGAATTAAGTGATTGCAGCATTTGAAGGGAATATGAAGATTTTTCGAGGCCTAAAGAGGGGGGGTTCTTCGGAGAAATATGGAGATGGGAAGTTAAAAGAGAACCGTTTTCTCCC

Coding sequence (CDS)

ATGCCACTGTGCGACTCGCTACAAAGTTTGGTGTTCTTTACTCGTAGGGTATCTTATTGTGTTGTGCTGTATCATCTTCTTCCGAATCGGGAGTTCTGTCATCGACTCAAAATGGCCGCCTCTTCTACTCCGTGTTTTCAACCGCAAATTATAACTTCTCAATCTCCGATCAGCCCTGCGACGAAGGTTTACTCGGGATTAAAGCTTCAATCTGCTAGTCCATTTGGAGGAGCGAAACCTAATCTTACTGTTGAATTCTATGGAAAAGTTCATAAAAGTCTACAATCCAGTACAAATAACAAAAAGGCATCCCGTATGCAGTTTCAGATGATGCCTATCGGGACACCAAGGGTGCCTTACAGAAATCCTGGCGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTTTATCGAGAACGAGTTATTTTCATCGGGCAAAACATTGATGAAGAGTTTAGCAATCAAATTTTGGCCACCATGCTATATCTCGACAGCATTGAATCTTCCAAAGCACTCTATATGTACTTAAATGGTCCAGGTGGAGATTTAACTCCAAGTTTGGCCATCTACGACACAATGCAGAGCTTGAAGAGTTCAGTACGTACCCATTGCGTGGGTTATGCCTATGATCTGGCAGCATTTCTTCTAGCAGCTGGAGAAAAGGGTCACCGCACTGCAATGCCTCTATCAAGAATTGCTTTACAATCCCCAGGTGGAGCTGCTCGTGGCCAGGCTGATGATGTTCGAAACGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTTCAATGAGCTTTCTAAGAAAACAGGCCAGCCTGTTGAACAGATTAACAAGGACTTGAGTCGAATGAAGCGATTTAATGCTCAGGCAGCTCTTGAGTATGGTCTTATCGACCGTATAGTCAGGCCAGCTCGCATTAAGGCCGATGCACCACGCAAGGATGATGGAGCAGGGCTTGGTTAG

Protein sequence

MPLCDSLQSLVFFTRRVSYCVVLYHLLPNREFCHRLKMAASSTPCFQPQIITSQSPISPATKVYSGLKLQSASPFGGAKPNLTVEFYGKVHKSLQSSTNNKKASRMQFQMMPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESSKALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPLSRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNAQAALEYGLIDRIVRPARIKADAPRKDDGAGLG

Homology

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BLAST of CmaCh02G015090 vs. ExPASy Swiss-Prot
Match: Q9XJ36 (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR2 PE=1 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 1.8e-112
Identity = 212/286 (74.13%), Postives = 238/286 (83.22%), Query Frame = 0


Query: 38  MAAS-STPCFQPQIITSQSPISPATKVYSGLKLQSASPFGGAKPNLTVEFYGKVHKSLQS 97
           MA S +T   QP    S SP S + K+YSGLK QSAS       NL  EFYG+V+KSLQS
Sbjct: 1   MAVSFNTTLHQP----SLSP-SCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQS 60

Query: 98  STNNKKASRMQFQMMPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQ 157
            T   KASR + +MMPIGTPRVPYRN  EGTWQWVD+WNALYRERVIFIGQNIDEEFSNQ
Sbjct: 61  GTG--KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQ 120

Query: 158 ILATMLYLDSIESSKALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFL 217
           ILATMLYLD+++ S+ +YMYLNGPGGDLTPSLAIYDTM+SLKS V THCVG AY+LA FL
Sbjct: 121 ILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFL 180

Query: 218 LAAGEKGHRTAMPLSRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVE 277
           LAAGEKGHR AMPLSRIALQSP GAARGQADD++NEA EL RIRDYLFNEL+K TGQP E
Sbjct: 181 LAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAE 240

Query: 278 QINKDLSRMKRFNAQAALEYGLIDRIVRPARIKADAPRKDDGAGLG 323
           ++ KDLSR+KRFNA+ A+EYGLID+IVRP RIK DAPR+D+ AGLG
Sbjct: 241 RVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKEDAPRQDESAGLG 279

[Close]

BLAST of CmaCh02G015090 vs. ExPASy Swiss-Prot
Match: Q8DJZ9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-54
Identity = 102/193 (52.85%), Postives = 136/193 (70.47%), Query Frame = 0


Query: 111 MPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESS 170
           MPIG P+VPYR PGE   QW+D++N LYRER+IF+G+ +D+E +NQI+A MLYLDS +  
Sbjct: 1   MPIGVPKVPYRLPGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPG 60

Query: 171 KALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPL 230
           K + +Y+N PGG +T  +AIYDTMQ +KS V T CVG A  + +FLLAAG KG R A+P 
Sbjct: 61  KDIMLYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPH 120

Query: 231 SRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNA 290
           SRI +  P G  RGQA D+  EA E+LR+R  L    +  TGQP+E+I +D+ R    +A
Sbjct: 121 SRIMIHQPSGGTRGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSA 180

Query: 291 QAALEYGLIDRIV 304
           + A  YGLIDR++
Sbjct: 181 EEAKNYGLIDRVI 193

[Close]

BLAST of CmaCh02G015090 vs. ExPASy Swiss-Prot
Match: Q8YP43 (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=clpP3 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.0e-54
Identity = 102/193 (52.85%), Postives = 135/193 (69.95%), Query Frame = 0


Query: 111 MPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESS 170
           MPIG P+VPYR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS +  
Sbjct: 1   MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPG 60

Query: 171 KALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPL 230
           K +Y+Y+N PGG +T  LAIYDTMQ +KS V T CVG A  + +FLLAAG KG R A+P 
Sbjct: 61  KDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPH 120

Query: 231 SRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNA 290
           SRI +  P G  RGQA D+  EA E+LRIR  L    +  T QP+ +I KD+ R    +A
Sbjct: 121 SRIMIHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTSQPLAKIEKDMDRDFFMSA 180

Query: 291 QAALEYGLIDRIV 304
           Q A+EYGLIDR++
Sbjct: 181 QEAMEYGLIDRVI 193

[Close]

BLAST of CmaCh02G015090 vs. ExPASy Swiss-Prot
Match: Q3MDK7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.4e-53
Identity = 102/193 (52.85%), Postives = 134/193 (69.43%), Query Frame = 0


Query: 111 MPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESS 170
           MPIG P+VPYR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS +  
Sbjct: 1   MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPG 60

Query: 171 KALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPL 230
           K +Y+Y+N PGG +T  LAIYDTMQ +KS V T CVG A  + +FLLAAG KG R A+P 
Sbjct: 61  KDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPH 120

Query: 231 SRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNA 290
           SRI +  P G  RGQA D+  EA E+LRIR  L    +  T QP+ +I KD+ R    +A
Sbjct: 121 SRIMIHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTNQPLAKIEKDMDRDFFMSA 180

Query: 291 QAALEYGLIDRIV 304
           Q A EYGLIDR++
Sbjct: 181 QEAKEYGLIDRVI 193

[Close]

BLAST of CmaCh02G015090 vs. ExPASy Swiss-Prot
Match: Q20F17 (ATP-dependent Clp protease proteolytic subunit OS=Oltmannsiellopsis viridis OX=51324 GN=clpP PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.2e-51
Identity = 93/192 (48.44%), Postives = 142/192 (73.96%), Query Frame = 0


Query: 111 MPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESS 170
           MPIG P+VP+R PGE + QWVDL+N LYRERV+F+ Q++D+E +NQ++  MLYL++ E S
Sbjct: 1   MPIGVPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKS 60

Query: 171 KALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPL 230
           K LY+Y+N PGG +T  +A+YDTM  +K+ V T CVG A  +A+F+LA G +G R A+P 
Sbjct: 61  KDLYIYINSPGGSVTCGIAVYDTMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPH 120

Query: 231 SRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNA 290
           SRI +  P G +RGQA +V +E+ E++RIR  +    +++TGQP+ +I++DL R +  +A
Sbjct: 121 SRIMIHQPEGGSRGQASEVLSESEEVMRIRRQVGKIYAQRTGQPLRRISRDLDRDQFLSA 180

Query: 291 QAALEYGLIDRI 303
           + A +YG++D++
Sbjct: 181 REAKDYGIVDQV 192

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BLAST of CmaCh02G015090 vs. TAIR 10
Match: AT1G12410.1 (CLP protease proteolytic subunit 2 )

HSP 1 Score: 407.1 bits (1045), Expect = 1.3e-113
Identity = 212/286 (74.13%), Postives = 238/286 (83.22%), Query Frame = 0


Query: 38  MAAS-STPCFQPQIITSQSPISPATKVYSGLKLQSASPFGGAKPNLTVEFYGKVHKSLQS 97
           MA S +T   QP    S SP S + K+YSGLK QSAS       NL  EFYG+V+KSLQS
Sbjct: 1   MAVSFNTTLHQP----SLSP-SCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQS 60

Query: 98  STNNKKASRMQFQMMPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQ 157
            T   KASR + +MMPIGTPRVPYRN  EGTWQWVD+WNALYRERVIFIGQNIDEEFSNQ
Sbjct: 61  GTG--KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQ 120

Query: 158 ILATMLYLDSIESSKALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFL 217
           ILATMLYLD+++ S+ +YMYLNGPGGDLTPSLAIYDTM+SLKS V THCVG AY+LA FL
Sbjct: 121 ILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFL 180

Query: 218 LAAGEKGHRTAMPLSRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVE 277
           LAAGEKGHR AMPLSRIALQSP GAARGQADD++NEA EL RIRDYLFNEL+K TGQP E
Sbjct: 181 LAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAE 240

Query: 278 QINKDLSRMKRFNAQAALEYGLIDRIVRPARIKADAPRKDDGAGLG 323
           ++ KDLSR+KRFNA+ A+EYGLID+IVRP RIK DAPR+D+ AGLG
Sbjct: 241 RVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKEDAPRQDESAGLG 279

[Close]

BLAST of CmaCh02G015090 vs. TAIR 10
Match: ATCG00670.1 (plastid-encoded CLP P )

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-40
Identity = 77/193 (39.90%), Postives = 124/193 (64.25%), Query Frame = 0


Query: 111 MPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESS 170
           MPIG P+VP+R+PGEG   WVD++N LYRER+ F+GQ +D E SNQ+++ M+YL   + +
Sbjct: 1   MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDT 60

Query: 171 KALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPL 230
           K LY+++N PGG +   +AIYDTMQ ++  V+T C+G A  +A+F+L  G    R A P 
Sbjct: 61  KDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPH 120

Query: 231 SRIALQSPGGA-ARGQADDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFN 290
           +R+ +  P  +    Q  +   EA ELL++R+ +     ++TG+P+  I++D+ R    +
Sbjct: 121 ARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMS 180

Query: 291 AQAALEYGLIDRI 303
           A  A  +G++D +
Sbjct: 181 ATEAQAHGIVDLV 193

[Close]

BLAST of CmaCh02G015090 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-33
Identity = 71/167 (42.51%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 137 LYRERVIFIGQNIDEEFSNQILATMLYLDSIESSKALYMYLNGPGGDLTPSLAIYDTMQS 196
           L++ R+I  G  +D++ +N I+A +LYLD+++ +K + MY+N PGG +T  +AI+DTM+ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 197 LKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPLSRIALQSPGGAARGQADDVRNEANEL 256
           ++  V T CVG A  + AFLL+AG KG R ++P SRI +  P G A+G   D+  +ANE+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 257 LRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNAQAALEYGLIDRIV 304
           L  +  L   L+  TGQ +E+IN+D  R    +A+ A EYGLID ++
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of CmaCh02G015090 vs. TAIR 10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7 )

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-32
Identity = 77/227 (33.92%), Postives = 131/227 (57.71%), Query Frame = 0


Query: 92  KSLQSSTNNKKAS----RMQFQMMPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQ 151
           K L S+ ++   S    R  + ++P+    + + + GE  +   D+++ L +ER+I I  
Sbjct: 10  KMLSSTPSSMATSIATGRRSYSLIPM---VIEHSSRGERAY---DIFSRLLKERIICING 69

Query: 152 NIDEEFSNQILATMLYLDSIESSKALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVG 211
            I+++ S+ ++A +LYL+S   SK ++MYLN PGG +T  LAIYDTMQ ++S + T C+G
Sbjct: 70  PINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLG 129

Query: 212 YAYDLAAFLLAAGEKGHRTAMPLSRIALQSPGGAARGQADDVRNEANELLRIRDYLFNEL 271
            A  +A+ LLAAG KG R ++P + + +  P G   GQA D+     +++R+ D L    
Sbjct: 130 QAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELY 189

Query: 272 SKKTGQPVEQINKDLSRMKRFNAQAALEYGLIDRIV--RPARIKADA 313
            K TGQP++ +  ++ R      + A  +G+ID ++  RP  +  DA
Sbjct: 190 VKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDERPLELVKDA 230

[Close]

BLAST of CmaCh02G015090 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 )

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-29
Identity = 64/190 (33.68%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 127 TWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESSKALYMYLNGPGGDLTP 186
           +++ +D  N L R+R++F+G  +D+  ++ +++ +L LD+ +S + + +++N PGG +T 
Sbjct: 80  SFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITA 139

Query: 187 SLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPLSRIALQSPGGAARGQA 246
            + IYD M+  K+ V T C+G A  + AFLLA+G KG R  MP S++ +  P G A G+A
Sbjct: 140 GMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKA 199

Query: 247 DDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNAQAALEYGLIDRIVRPA 306
            ++     E++  +  L    S+ TG+P  +I  D  R    N   A EYGLID ++   
Sbjct: 200 TEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDG 259

Query: 307 RIKADAPRKD 317
           +    AP  D
Sbjct: 260 KPGLIAPIGD 269

The following BLAST results are available for this feature:

BLAST of CmaCh02G015090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XJ36	1.8e-112	74.13	ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ...	[more]
Q8DJZ9	1.3e-54	52.85	ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatu...	[more]
Q8YP43	5.0e-54	52.85	Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Nostoc sp. (strain ...	[more]
Q3MDK7	1.4e-53	52.85	ATP-dependent Clp protease proteolytic subunit 2 OS=Trichormus variabilis (strai...	[more]
Q20F17	5.2e-51	48.44	ATP-dependent Clp protease proteolytic subunit OS=Oltmannsiellopsis viridis OX=5...	[more]

BLAST of CmaCh02G015090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12410.1	1.3e-113	74.13	CLP protease proteolytic subunit 2	[more]
ATCG00670.1	1.9e-40	39.90	plastid-encoded CLP P	[more]
AT1G02560.1	1.7e-33	42.51	nuclear encoded CLP protease 5	[more]
AT5G23140.1	1.4e-32	33.92	nuclear-encoded CLP protease P7	[more]
AT1G66670.1	1.5e-29	33.68	CLP protease proteolytic subunit 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 224..243 score: 33.38 coord: 172..192 score: 44.29 coord: 132..147 score: 44.53 coord: 281..300 score: 42.0 coord: 203..220 score: 48.75
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 114..306 score: 32.158905
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 132..302 e-value: 8.93486E-82 score: 243.503
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 129..304 e-value: 2.9E-60 score: 203.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 46..316
None	No IPR available	GENE3D	3.90.226.10		coord: 103..311 e-value: 2.3E-57 score: 195.9
None	No IPR available	PANTHER	PTHR10381:SF46	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC	coord: 46..316
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 125..306

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G015090.1	CmaCh02G015090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity