CmaCh02G014910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G014910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like
Location	Cma_Chr02: 8520812 .. 8522762 (-)
RNA-Seq Expression	CmaCh02G014910
Synteny	CmaCh02G014910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAAAAAGAAAAAATGCTGAAAAGGTTTGGAATTGTTTCAGATCGAGGAACAAACTTGTAACTTTAAGGAGAGAGGTTGCTTGAATTTTGATTTGGCAGTTAAATTTTGGAATCGGAAATTTCTTTTTCTAATTCATAAAATTCACACCCCACGTTAATTCAGCCTGAAACTGAAAGCGAAATATTAGTTTTTAATTCGCACAAAAATGTGTGTGTTTTGAGTGGGTATTCTGTGTTATATAAATCTTCAGGATTCAGATTGAAGAAGTGGTTCAATTCTCCCATTTCCTCGGAACCTCTTCTTCCTTCTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCGTCATCCTTCTCTTCTTCTTCCATGGGTATTCTCGCTGACAGTGGCTCAGGTCCTCTCAAGTTCTTGATTTACGGCCGGACCGGCTGGATTGGCGGTTTGCTTGGCCAGCTCTGTCAACAACAGGGGATCGATTTCGTGTATGGTTCCGGCCGCCTCGAGAACCGCACCTCCCTCGAGGCCGACATCGCCGCCGTGAAGCCCACCCATGTCTTCAACGCCGCCGGCGTCACCGGCCGCCCGAACGTCGACTGGTGCGAATCGCATAAGGTCGAGACCATTAGAACCAATGTGGTCGGAACCTTGAACTTGGCCGATGTGTGCCGCGAGAGAGGGTTGATCTTAATTAATTACGCCACTGGCTGCATTTTCGAGTACGATTCGGCGCATCCTCTGAATTCGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTCATTGGGTCATTTTATTCCAAGACTAAAGCCATGGTGAGCCCTAGATTTTGACTGCTTCATTGTTGTTTGATTATTGACTGATTTTGATTCTGTATGATTCGTAGATGCGTTGTGAAATTTGACTGTAGATCTATGATTACAGAGTGAATGGCTCTGTTTAGAGAAATCATAACTGAAATCAGCCATGTATGATTGTTCTTGGGGTGGAGTTTGTGAATGTTCTTTAGATCTGGATTGTTGTCTTTAGAATGTCTTGAATTTCTGTTCATTGATTTCTATTCGATGAGAATGCATCAAATATATTCCTTGAATCTGATGGGCGGATTCTACTTTCATGTTACTTTCACATTTGGGGGATTAAAAGGTGGAGGATCTGCTAAAGAACTACGAGAATGTGTGCACATTGCGCGTTAGGATGCCGATATCCTCCGACTTATCGAACCCTCGCAACTTCATCACAAAGATAACTAGATATGAGAAGGTGGTCGACATCCCGAACTCGATGACAATCTTGGATGAACTCCTGCCGATATCGATCGAAATGGCAAAAAGAAATCTCACAGGAATATGGAATTTCACGAATCCAGGAGTGGTGAGCCACAATGAGATCTTGGAGATGTACAAGCAATTCATCGACCCCAATTTGACATGGAAGAACTTCAGCCTGGAGGAGCAAGCCAAAGTGATCGTAGCTCCTCGGAGCAACAACGAGATGGATGCGACCAAGTTGAAGACCGAATTCCCGGAGCTGTTGTCCATCAAGGACTCCCTGGTCAAGCATGTCTTCAAGCCAAACCAGAAAACTTCTGCAGCTTAGAATCAATCAATCAATCAATCAATCAATCAATGGTATTTGCCTTCTCTATATATTTTTCATTTGGCATTTGGGTTCTTGAATTTCAAATATTTTCCGTGTTCGTTCCCATAGGAGGTAGACGTTAAATTATGATCCATTTTTGAATCCCATATCTACTAGTTTTTTGTTTGTTTGTTTGATGGTAAACACAATGTTGAATAAAAGTAGAGTGAAAGACGAAGATGTAGCATTTGTGGTGGTGCTTTATGAGATATGATTTCAGTTTATCTTTAATCAAGGTATCAATGTTCTTAATATTACATCAACTTTTAACTATTTAAAGCTCTTATTCTATTATTATGATGCCAATTTTAATT

mRNA sequence

CTGAAAAAAGAAAAAATGCTGAAAAGGTTTGGAATTGTTTCAGATCGAGGAACAAACTTGTAACTTTAAGGAGAGAGGTTGCTTGAATTTTGATTTGGCAGTTAAATTTTGGAATCGGAAATTTCTTTTTCTAATTCATAAAATTCACACCCCACGTTAATTCAGCCTGAAACTGAAAGCGAAATATTAGTTTTTAATTCGCACAAAAATGTGTGTGTTTTGAGTGGGTATTCTGTGTTATATAAATCTTCAGGATTCAGATTGAAGAAGTGGTTCAATTCTCCCATTTCCTCGGAACCTCTTCTTCCTTCTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCGTCATCCTTCTCTTCTTCTTCCATGGGTATTCTCGCTGACAGTGGCTCAGGTCCTCTCAAGTTCTTGATTTACGGCCGGACCGGCTGGATTGGCGGTTTGCTTGGCCAGCTCTGTCAACAACAGGGGATCGATTTCGTGTATGGTTCCGGCCGCCTCGAGAACCGCACCTCCCTCGAGGCCGACATCGCCGCCGTGAAGCCCACCCATGTCTTCAACGCCGCCGGCGTCACCGGCCGCCCGAACGTCGACTGGTGCGAATCGCATAAGGTCGAGACCATTAGAACCAATGTGGTCGGAACCTTGAACTTGGCCGATGTGTGCCGCGAGAGAGGGTTGATCTTAATTAATTACGCCACTGGCTGCATTTTCGAGTACGATTCGGCGCATCCTCTGAATTCGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTCATTGGGTCATTTTATTCCAAGACTAAAGCCATGGTGGAGGATCTGCTAAAGAACTACGAGAATGTGTGCACATTGCGCGTTAGGATGCCGATATCCTCCGACTTATCGAACCCTCGCAACTTCATCACAAAGATAACTAGATATGAGAAGGTGGTCGACATCCCGAACTCGATGACAATCTTGGATGAACTCCTGCCGATATCGATCGAAATGGCAAAAAGAAATCTCACAGGAATATGGAATTTCACGAATCCAGGAGTGGTGAGCCACAATGAGATCTTGGAGATGTACAAGCAATTCATCGACCCCAATTTGACATGGAAGAACTTCAGCCTGGAGGAGCAAGCCAAAGTGATCGTAGCTCCTCGGAGCAACAACGAGATGGATGCGACCAAGTTGAAGACCGAATTCCCGGAGCTGTTGTCCATCAAGGACTCCCTGGTCAAGCATGTCTTCAAGCCAAACCAGAAAACTTCTGCAGCTTAGAATCAATCAATCAATCAATCAATCAATCAATGGTATTTGCCTTCTCTATATATTTTTCATTTGGCATTTGGGTTCTTGAATTTCAAATATTTTCCGTGTTCGTTCCCATAGGAGGTAGACGTTAAATTATGATCCATTTTTGAATCCCATATCTACTAGTTTTTTGTTTGTTTGTTTGATGGTAAACACAATGTTGAATAAAAGTAGAGTGAAAGACGAAGATGTAGCATTTGTGGTGGTGCTTTATGAGATATGATTTCAGTTTATCTTTAATCAAGGTATCAATGTTCTTAATATTACATCAACTTTTAACTATTTAAAGCTCTTATTCTATTATTATGATGCCAATTTTAATT

Coding sequence (CDS)

ATGGGTATTCTCGCTGACAGTGGCTCAGGTCCTCTCAAGTTCTTGATTTACGGCCGGACCGGCTGGATTGGCGGTTTGCTTGGCCAGCTCTGTCAACAACAGGGGATCGATTTCGTGTATGGTTCCGGCCGCCTCGAGAACCGCACCTCCCTCGAGGCCGACATCGCCGCCGTGAAGCCCACCCATGTCTTCAACGCCGCCGGCGTCACCGGCCGCCCGAACGTCGACTGGTGCGAATCGCATAAGGTCGAGACCATTAGAACCAATGTGGTCGGAACCTTGAACTTGGCCGATGTGTGCCGCGAGAGAGGGTTGATCTTAATTAATTACGCCACTGGCTGCATTTTCGAGTACGATTCGGCGCATCCTCTGAATTCGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTCATTGGGTCATTTTATTCCAAGACTAAAGCCATGGTGGAGGATCTGCTAAAGAACTACGAGAATGTGTGCACATTGCGCGTTAGGATGCCGATATCCTCCGACTTATCGAACCCTCGCAACTTCATCACAAAGATAACTAGATATGAGAAGGTGGTCGACATCCCGAACTCGATGACAATCTTGGATGAACTCCTGCCGATATCGATCGAAATGGCAAAAAGAAATCTCACAGGAATATGGAATTTCACGAATCCAGGAGTGGTGAGCCACAATGAGATCTTGGAGATGTACAAGCAATTCATCGACCCCAATTTGACATGGAAGAACTTCAGCCTGGAGGAGCAAGCCAAAGTGATCGTAGCTCCTCGGAGCAACAACGAGATGGATGCGACCAAGTTGAAGACCGAATTCCCGGAGCTGTTGTCCATCAAGGACTCCCTGGTCAAGCATGTCTTCAAGCCAAACCAGAAAACTTCTGCAGCTTAG

Protein sequence

MGILADSGSGPLKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNSGIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWKNFSLEEQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKTSAA

Homology

[Close]

BLAST of CmaCh02G014910 vs. ExPASy Swiss-Prot
Match: Q9LQ04 (Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana OX=3702 GN=NRS/ER PE=1 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 9.7e-145
Identity = 242/290 (83.45%), Postives = 269/290 (92.76%), Query Frame = 0


Query: 7   SGSGPLKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNA 66
           S S    FLIYG+TGWIGGLLG+LC+ QGI + YGSGRL++R S+ ADI +VKP+HVFNA
Sbjct: 8   SSSSSFNFLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPSHVFNA 67

Query: 67  AGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNS 126
           AGVTGRPNVDWCESHKVETIRTNV GTL LAD+CRE+GL+LINYATGCIFEYDS HPL S
Sbjct: 68  AGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSGHPLGS 127

Query: 127 GIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRY 186
           GIGFKE++ PNF GSFYSKTKAMVE+LLKNYENVCTLRVRMPISSDL+NPRNFITKI RY
Sbjct: 128 GIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARY 187

Query: 187 EKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWK 246
           EKVVDIPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMY+ +IDP+ TWK
Sbjct: 188 EKVVDIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWK 247

Query: 247 NFSLEEQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           NF+LEEQAKVIVAPRSNNE+DATKLKTEFPEL+SIK+SL+K VF+PN+KT
Sbjct: 248 NFTLEEQAKVIVAPRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKKT 297

[Close]

BLAST of CmaCh02G014910 vs. ExPASy Swiss-Prot
Match: Q9SYM5 (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana OX=3702 GN=RHM1 PE=1 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 4.1e-135
Identity = 225/285 (78.95%), Postives = 256/285 (89.82%), Query Frame = 0


Query: 12  LKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNAAGVTG 71
           LKFLIYG+TGWIGGLLG++C +QGI + YG GRLE+R+SL  DI +VKPTHVFN+AGVTG
Sbjct: 385 LKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTG 444

Query: 72  RPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNSGIGFK 131
           RPNVDWCESHK ETIR NV GTL LADVCRE GL+++N+ATGCIFEYD  HP  SGIGFK
Sbjct: 445 RPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFK 504

Query: 132 EDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVD 191
           E++ PNF GSFYSKTKAMVE+LLK Y+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+
Sbjct: 505 EEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVN 564

Query: 192 IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWKNFSLE 251
           IPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ +I+P   W NF+LE
Sbjct: 565 IPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLE 624

Query: 252 EQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           EQAKVIVAPRSNNEMDA+KLK EFPELLSIK+SL+K+ + PN+KT
Sbjct: 625 EQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669

[Close]

BLAST of CmaCh02G014910 vs. ExPASy Swiss-Prot
Match: Q9LH76 (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana OX=3702 GN=RHM3 PE=2 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 7.0e-135
Identity = 223/285 (78.25%), Postives = 258/285 (90.53%), Query Frame = 0


Query: 12  LKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNAAGVTG 71
           LKFLIYG+TGW+GGLLG+LC++QGI + YG GRLE+R SL ADI ++KP+HVFNAAG+TG
Sbjct: 380 LKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTG 439

Query: 72  RPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNSGIGFK 131
           RPNVDWCESHK ETIR NV GTL LADVCRE  L+++N+ATGCIFEYD+AHP  SGIGFK
Sbjct: 440 RPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFK 499

Query: 132 EDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVD 191
           E++ PNF GSFYSKTKAMVE+LL+ ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+
Sbjct: 500 EEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVN 559

Query: 192 IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWKNFSLE 251
           IPNSMTILDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYK +I+P+  W NF+LE
Sbjct: 560 IPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLE 619

Query: 252 EQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           EQAKVIVAPRSNNEMD  KL  EFPE+LSIKDSL+K+VF+PN++T
Sbjct: 620 EQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664

[Close]

BLAST of CmaCh02G014910 vs. ExPASy Swiss-Prot
Match: Q9LPG6 (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana OX=3702 GN=RHM2 PE=1 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 7.7e-134
Identity = 223/292 (76.37%), Postives = 259/292 (88.70%), Query Frame = 0


Query: 6   DSG-SGPLKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVF 65
           DSG    LKFLIYG+TGW+GGLLG+LC++QGI + YG GRLE+R SL ADI ++KPTHVF
Sbjct: 376 DSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVF 435

Query: 66  NAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPL 125
           NAAG+TGRPNVDWCESHK ETIR NV GTL LADVCRE  L+++N+ATGCIFEYD+ HP 
Sbjct: 436 NAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPE 495

Query: 126 NSGIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKIT 185
            SGIGFKE++ PNF GSFYSKTKAMVE+LL+ ++NVCTLRVRMPISSDL+NPRNFITKI+
Sbjct: 496 GSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKIS 555

Query: 186 RYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLT 245
           RY KVVDIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYK +I+P   
Sbjct: 556 RYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFK 615

Query: 246 WKNFSLEEQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           W NF++EEQAKVIVA RSNNEMD +KL  EFPE+LSIK+SL+K+VF+PN++T
Sbjct: 616 WSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667

[Close]

BLAST of CmaCh02G014910 vs. ExPASy Swiss-Prot
Match: Q5UPS5 (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_L780 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-56
Identity = 115/286 (40.21%), Postives = 178/286 (62.24%), Query Frame = 0


Query: 12  LKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNAAGVT- 71
           +K+LI+G  GWIG ++ ++ +QQG   V    R ++ +++E +I+ +KP  V +  G T 
Sbjct: 1   MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTH 60

Query: 72  --GRPNVDWCE--SHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNS 131
             G   +D+ E     VE ++ N+ G L LA +C++  + L    TGCIFE  +    + 
Sbjct: 61  GPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADE 120

Query: 132 GIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYEN-VCTLRVRMPISSDLSNPRNFITKITR 191
             GF E++ PNF GS YS  K   + L+  ++N V  LR+RMPI+ +  NPR+FITKI  
Sbjct: 121 K-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILS 180

Query: 192 YEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTW 251
           Y ++  IPNSMTILD+++P+ I+MA+   TG +NFTNPG+VSHNEIL + +    PNLTW
Sbjct: 181 YSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTW 240

Query: 252 KNFSLEEQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFK 292
           +N S E+Q  ++ A RSNN ++  KL++ +P++  I   + + V K
Sbjct: 241 ENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSK 284

[Close]

BLAST of CmaCh02G014910 vs. TAIR 10
Match: AT1G63000.1 (nucleotide-rhamnose synthase/epimerase-reductase )

HSP 1 Score: 514.2 bits (1323), Expect = 6.9e-146
Identity = 242/290 (83.45%), Postives = 269/290 (92.76%), Query Frame = 0


Query: 7   SGSGPLKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNA 66
           S S    FLIYG+TGWIGGLLG+LC+ QGI + YGSGRL++R S+ ADI +VKP+HVFNA
Sbjct: 8   SSSSSFNFLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPSHVFNA 67

Query: 67  AGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNS 126
           AGVTGRPNVDWCESHKVETIRTNV GTL LAD+CRE+GL+LINYATGCIFEYDS HPL S
Sbjct: 68  AGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSGHPLGS 127

Query: 127 GIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRY 186
           GIGFKE++ PNF GSFYSKTKAMVE+LLKNYENVCTLRVRMPISSDL+NPRNFITKI RY
Sbjct: 128 GIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARY 187

Query: 187 EKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWK 246
           EKVVDIPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMY+ +IDP+ TWK
Sbjct: 188 EKVVDIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWK 247

Query: 247 NFSLEEQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           NF+LEEQAKVIVAPRSNNE+DATKLKTEFPEL+SIK+SL+K VF+PN+KT
Sbjct: 248 NFTLEEQAKVIVAPRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKKT 297

[Close]

BLAST of CmaCh02G014910 vs. TAIR 10
Match: AT1G78570.1 (rhamnose biosynthesis 1 )

HSP 1 Score: 482.3 bits (1240), Expect = 2.9e-136
Identity = 225/285 (78.95%), Postives = 256/285 (89.82%), Query Frame = 0


Query: 12  LKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNAAGVTG 71
           LKFLIYG+TGWIGGLLG++C +QGI + YG GRLE+R+SL  DI +VKPTHVFN+AGVTG
Sbjct: 385 LKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTG 444

Query: 72  RPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNSGIGFK 131
           RPNVDWCESHK ETIR NV GTL LADVCRE GL+++N+ATGCIFEYD  HP  SGIGFK
Sbjct: 445 RPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFK 504

Query: 132 EDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVD 191
           E++ PNF GSFYSKTKAMVE+LLK Y+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+
Sbjct: 505 EEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVN 564

Query: 192 IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWKNFSLE 251
           IPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ +I+P   W NF+LE
Sbjct: 565 IPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLE 624

Query: 252 EQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           EQAKVIVAPRSNNEMDA+KLK EFPELLSIK+SL+K+ + PN+KT
Sbjct: 625 EQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669

[Close]

BLAST of CmaCh02G014910 vs. TAIR 10
Match: AT3G14790.1 (rhamnose biosynthesis 3 )

HSP 1 Score: 481.5 bits (1238), Expect = 5.0e-136
Identity = 223/285 (78.25%), Postives = 258/285 (90.53%), Query Frame = 0


Query: 12  LKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVFNAAGVTG 71
           LKFLIYG+TGW+GGLLG+LC++QGI + YG GRLE+R SL ADI ++KP+HVFNAAG+TG
Sbjct: 380 LKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTG 439

Query: 72  RPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNSGIGFK 131
           RPNVDWCESHK ETIR NV GTL LADVCRE  L+++N+ATGCIFEYD+AHP  SGIGFK
Sbjct: 440 RPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFK 499

Query: 132 EDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVD 191
           E++ PNF GSFYSKTKAMVE+LL+ ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+
Sbjct: 500 EEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVN 559

Query: 192 IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWKNFSLE 251
           IPNSMTILDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYK +I+P+  W NF+LE
Sbjct: 560 IPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLE 619

Query: 252 EQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           EQAKVIVAPRSNNEMD  KL  EFPE+LSIKDSL+K+VF+PN++T
Sbjct: 620 EQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664

[Close]

BLAST of CmaCh02G014910 vs. TAIR 10
Match: AT1G53500.1 (NAD-dependent epimerase/dehydratase family protein )

HSP 1 Score: 478.0 bits (1229), Expect = 5.5e-135
Identity = 223/292 (76.37%), Postives = 259/292 (88.70%), Query Frame = 0


Query: 6   DSG-SGPLKFLIYGRTGWIGGLLGQLCQQQGIDFVYGSGRLENRTSLEADIAAVKPTHVF 65
           DSG    LKFLIYG+TGW+GGLLG+LC++QGI + YG GRLE+R SL ADI ++KPTHVF
Sbjct: 376 DSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVF 435

Query: 66  NAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPL 125
           NAAG+TGRPNVDWCESHK ETIR NV GTL LADVCRE  L+++N+ATGCIFEYD+ HP 
Sbjct: 436 NAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPE 495

Query: 126 NSGIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKIT 185
            SGIGFKE++ PNF GSFYSKTKAMVE+LL+ ++NVCTLRVRMPISSDL+NPRNFITKI+
Sbjct: 496 GSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKIS 555

Query: 186 RYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLT 245
           RY KVVDIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYK +I+P   
Sbjct: 556 RYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFK 615

Query: 246 WKNFSLEEQAKVIVAPRSNNEMDATKLKTEFPELLSIKDSLVKHVFKPNQKT 297
           W NF++EEQAKVIVA RSNNEMD +KL  EFPE+LSIK+SL+K+VF+PN++T
Sbjct: 616 WSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667

[Close]

BLAST of CmaCh02G014910 vs. TAIR 10
Match: AT5G59290.1 (UDP-glucuronic acid decarboxylase 3 )

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-08
Identity = 46/179 (25.70%), Postives = 83/179 (46.37%), Query Frame = 0


Query: 83  VETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSAHPLNSGIGFKEDEIPNFIGSF 142
           V+TI+TNV+GTLN+  + +  G  ++  +T  ++     HP      +  +  P  + S 
Sbjct: 115 VKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPE--SYWGNVNPIGVRSC 174

Query: 143 YSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPR----------NFITKITRYEKV-VD 202
           Y + K + E L+ +Y     + +R+    +   PR          NFI +  R E + V 
Sbjct: 175 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEALTVQ 234

Query: 203 IPNSMT----ILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNLTWK 247
            P + T     + +++   I + + N TG  N  NPG  +  E+ E  K+ I+P++  K
Sbjct: 235 KPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINIGNPGEFTMVELAETVKELINPSIEIK 291

The following BLAST results are available for this feature:

BLAST of CmaCh02G014910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQ04	9.7e-145	83.45	Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reducta...	[more]
Q9SYM5	4.1e-135	78.95	Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime...	[more]
Q9LH76	7.0e-135	78.25	Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime...	[more]
Q9LPG6	7.7e-134	76.37	Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime...	[more]
Q5UPS5	1.0e-56	40.21	Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MI...	[more]

BLAST of CmaCh02G014910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63000.1	6.9e-146	83.45	nucleotide-rhamnose synthase/epimerase-reductase	[more]
AT1G78570.1	2.9e-136	78.95	rhamnose biosynthesis 1	[more]
AT3G14790.1	5.0e-136	78.25	rhamnose biosynthesis 3	[more]
AT1G53500.1	5.5e-135	76.37	NAD-dependent epimerase/dehydratase family protein	[more]
AT5G59290.1	3.9e-08	25.70	UDP-glucuronic acid decarboxylase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029903	RmlD-like substrate binding domain	PFAM	PF04321	RmlD_sub_bind	coord: 13..186 e-value: 1.9E-14 score: 53.4
None	No IPR available	GENE3D	3.40.50.720		coord: 8..299 e-value: 2.3E-81 score: 275.2
None	No IPR available	PANTHER	PTHR43000	DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED	coord: 11..294
None	No IPR available	PANTHER	PTHR43000:SF26	BNAC05G13120D PROTEIN	coord: 11..294
None	No IPR available	CDD	cd05254	dTDP_HR_like_SDR_e	coord: 13..285 e-value: 4.21245E-62 score: 196.308
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 12..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014910.1	CmaCh02G014910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019305	dTDP-rhamnose biosynthetic process
biological_process	GO:0010253	UDP-rhamnose biosynthetic process
molecular_function	GO:0008830	dTDP-4-dehydrorhamnose 3,5-epimerase activity
molecular_function	GO:0008831	dTDP-4-dehydrorhamnose reductase activity