CmaCh02G014720 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G014720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	remorin-like
Location	Cma_Chr02: 8437165 .. 8438228 (+)
RNA-Seq Expression	CmaCh02G014720
Synteny	CmaCh02G014720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCGGTTTCAGCTCCTCCTTCCGACAAACTTGTTCCTCCAAAGGACAAAGGTAAAACTCTCCATTTTCTTTCTAGTTGCCTCTAATTCAACAACATTTGCAAGATTCTTGCTTTCGAGACGTTCGAAAGTGTTCGTTAAAAGTAGAAAACAAAACAAAGAAATTGTTATAGAACGGGGTTTTGTGATCTTAGATGTTGCGTTGGCTCGTGTCGAATTGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAGAACAGGTAAAATATAGAGAAGTTTGTTCATTGTTGAATTTTGGATTCTGTATTTGAAATCTTTGGAACAGGGCATACAAAAGGCTCTCTGCTATTGATTCTTGGGAGAATACCAGAAAAGCTTCAATACAAGCACAGCTGATGAAGTTAGAGGTACATTTTCATTTCTTTACTTCTTTCTCACTGATTAAGACTCGGGTTTTCGATACGAGTTTCGAAGTGTTTGGTCTTTTGTGAAACGAAAGGAGAAAATGGAGAAGAAGAAAGCTGAGTATGGCGAGCTAATGAAGAACAAAATCGTTGGAATTCACAAGCAAGGCGAAGAGAAGAAAGCAACCATTGAAGCTGAGCGAAGAGAACAGTGTCTGAAGGTCGAGGAGACTGCAGCAAAATATCGAGCTTCCGGGTTCACCCCGAAGACTCTACTACTCAGATGCTTCAGTGGTTGAGATGGGTTGGGGTTGAAAGAATAGACTCCTATCTCATATTTGCACTCTGGTTTTAGTCTTTGCTTCGTTTTGTATTGAGTTTGTTGGAGATGACTTGCAGGTGTTCCTTTTGATGTGTAAAGATTATATCAGTTTGCTGCGTTTTATCCACTCATCACTTTTCTTATGATCTATGCACTGATTCAGTTCTAACTAGCAGTATTGATCCATGTCTTCTGCTGCTTGTTTGCCTACAAAGCACGGGAAATTAAGCCATGTTATTCCTTAGCAAGTGTGATAGCCCAAGCCTACCGTTAACATGTATTGTTCACTTTGACCCGTTACATATAACGGTCA

mRNA sequence

ATGACAGCGGTTTCAGCTCCTCCTTCCGACAAACTTGTTCCTCCAAAGGACAAAGATGTTGCGTTGGCTCGTGTCGAATTGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAGAACAGGGCATACAAAAGGCTCTCTGCTATTGATTCTTGGGAGAATACCAGAAAAGCTTCAATACAAGCACAGCTGATGAAGTTAGAGGAGAAAATGGAGAAGAAGAAAGCTGAGTATGGCGAGCTAATGAAGAACAAAATCGTTGGAATTCACAAGCAAGGCGAAGAGAAGAAAGCAACCATTGAAGCTGAGCGAAGAGAACAGTGTCTGAAGGTCGAGGAGACTGCAGCAAAATATCGAGCTTCCGGGTTCACCCCGAAGACTCTACTACTCAGATGCTTCAGTGGTTGAGATGGGTTGGGGTTGAAAGAATAGACTCCTATCTCATATTTGCACTCTGGTTTTAGTCTTTGCTTCGTTTTGTATTGAGTTTGTTGGAGATGACTTGCAGGTGTTCCTTTTGATGTGTAAAGATTATATCAGTTTGCTGCGTTTTATCCACTCATCACTTTTCTTATGATCTATGCACTGATTCAGTTCTAACTAGCAGTATTGATCCATGTCTTCTGCTGCTTGTTTGCCTACAAAGCACGGGAAATTAAGCCATGTTATTCCTTAGCAAGTGTGATAGCCCAAGCCTACCGTTAACATGTATTGTTCACTTTGACCCGTTACATATAACGGTCA

Coding sequence (CDS)

ATGACAGCGGTTTCAGCTCCTCCTTCCGACAAACTTGTTCCTCCAAAGGACAAAGATGTTGCGTTGGCTCGTGTCGAATTGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAGAACAGGGCATACAAAAGGCTCTCTGCTATTGATTCTTGGGAGAATACCAGAAAAGCTTCAATACAAGCACAGCTGATGAAGTTAGAGGAGAAAATGGAGAAGAAGAAAGCTGAGTATGGCGAGCTAATGAAGAACAAAATCGTTGGAATTCACAAGCAAGGCGAAGAGAAGAAAGCAACCATTGAAGCTGAGCGAAGAGAACAGTGTCTGAAGGTCGAGGAGACTGCAGCAAAATATCGAGCTTCCGGGTTCACCCCGAAGACTCTACTACTCAGATGCTTCAGTGGTTGA

Protein sequence

MTAVSAPPSDKLVPPKDKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEEKMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPKTLLLRCFSG

Homology

[Close]

BLAST of CmaCh02G014720 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.6e-34
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 17  DKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEE 76
           ++D  LARVE EK+++LIKAWEE+EK K EN+A K+LS+I SWEN +KA+++A+L K+EE
Sbjct: 80  NRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEE 139

Query: 77  KMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPKTL 136
           ++EKKKAEY E MKNKI  IHK+ EEK+A IEA+R E+ LK EE AAKYRA+G  PK L
Sbjct: 140 QLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKL 198

[Close]

BLAST of CmaCh02G014720 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-33
Identity = 78/135 (57.78%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 2   TAVSAPPSDKLVPPKDKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWEN 61
           T    P  +K     D+D  LARV  EK+++LIKAWEESEK KAEN+A K++SAI +WEN
Sbjct: 61  TKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWEN 120

Query: 62  TRKASIQAQLMKLEEKMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEET 121
           ++KA+++A+L K+EE++EKKKAEY E MKNKI  +HK+ EEK+A IEA+R E  LK EE 
Sbjct: 121 SKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEEL 180

Query: 122 AAKYRASGFTPKTLL 137
           AAKYRA+G  PK +L
Sbjct: 181 AAKYRATGTAPKKIL 195

[Close]

BLAST of CmaCh02G014720 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-33
Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 3   AVSAPPSDKLVPPK------DKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAI 62
           AV   P ++  P K      D+DV LA +E EKK + IKAWEESEK KAENRA K++S +
Sbjct: 48  AVVEKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDV 107

Query: 63  DSWENTRKASIQAQLMKLEEKMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCL 122
            +WEN++KA+++AQL K+EEK+EKKKA+YGE MKNK+  IHK  EEK+A +EA++ E+ L
Sbjct: 108 HAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELL 167

Query: 123 KVEETAAKYRASGFTPK 134
           K EE  AKYRA+G  PK
Sbjct: 168 KAEEMGAKYRATGVVPK 184

[Close]

BLAST of CmaCh02G014720 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-32
Identity = 69/117 (58.97%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 17  DKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEE 76
           D+DV LA +  EK+L+ ++AWEESEK KAEN+A K+++ + +WEN++KA+++AQL K+EE
Sbjct: 90  DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEE 149

Query: 77  KMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPK 134
           ++EKKKAEY E MKNK+  IHK+ EE++A IEA+R E  LK EETAAKYRA+G  PK
Sbjct: 150 QLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPK 206

[Close]

BLAST of CmaCh02G014720 vs. ExPASy Swiss-Prot
Match: P93758 (Remorin 4.2 OS=Arabidopsis thaliana OX=3702 GN=REM4.2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-06
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 24  RVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEEKMEKKKA 83
           RV+ E+  A I AW+ ++  K  NR  +  + I+ W N +     + + K+E K+E++KA
Sbjct: 157 RVKREEVEAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKA 216

Query: 84  EYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTP 133
           +  E  +N +    ++ EE++AT EA+R  +  KV E A   RA G  P
Sbjct: 217 KAMEKTQNNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPP 265

[Close]

BLAST of CmaCh02G014720 vs. TAIR 10
Match: AT5G23750.1 (Remorin family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-35
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 17  DKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEE 76
           ++D  LARVE EK+++LIKAWEE+EK K EN+A K+LS+I SWEN +KA+++A+L K+EE
Sbjct: 80  NRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEE 139

Query: 77  KMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPKTL 136
           ++EKKKAEY E MKNKI  IHK+ EEK+A IEA+R E+ LK EE AAKYRA+G  PK L
Sbjct: 140 QLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKL 198

[Close]

BLAST of CmaCh02G014720 vs. TAIR 10
Match: AT5G23750.2 (Remorin family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-35
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 17  DKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEE 76
           ++D  LARVE EK+++LIKAWEE+EK K EN+A K+LS+I SWEN +KA+++A+L K+EE
Sbjct: 79  NRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEE 138

Query: 77  KMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPKTL 136
           ++EKKKAEY E MKNKI  IHK+ EEK+A IEA+R E+ LK EE AAKYRA+G  PK L
Sbjct: 139 QLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKL 197

[Close]

BLAST of CmaCh02G014720 vs. TAIR 10
Match: AT2G45820.1 (Remorin family protein )

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-34
Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 3   AVSAPPSDKLVPPK------DKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAI 62
           AV   P ++  P K      D+DV LA +E EKK + IKAWEESEK KAENRA K++S +
Sbjct: 48  AVVEKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDV 107

Query: 63  DSWENTRKASIQAQLMKLEEKMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCL 122
            +WEN++KA+++AQL K+EEK+EKKKA+YGE MKNK+  IHK  EEK+A +EA++ E+ L
Sbjct: 108 HAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELL 167

Query: 123 KVEETAAKYRASGFTPK 134
           K EE  AKYRA+G  PK
Sbjct: 168 KAEEMGAKYRATGVVPK 184

[Close]

BLAST of CmaCh02G014720 vs. TAIR 10
Match: AT3G61260.1 (Remorin family protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-33
Identity = 69/117 (58.97%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 17  DKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEE 76
           D+DV LA +  EK+L+ ++AWEESEK KAEN+A K+++ + +WEN++KA+++AQL K+EE
Sbjct: 90  DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEE 149

Query: 77  KMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPK 134
           ++EKKKAEY E MKNK+  IHK+ EE++A IEA+R E  LK EETAAKYRA+G  PK
Sbjct: 150 QLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPK 206

[Close]

BLAST of CmaCh02G014720 vs. TAIR 10
Match: AT3G48940.1 (Remorin family protein )

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-32
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 1   MTAVSAPPSDKLVPPKDKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWE 60
           + A   P  DK V    +D  L R+E +K+++LIKAWEE+EK K EN+A K++S++ +WE
Sbjct: 37  VVAAKEPTEDKKVGSVHRDAVLVRLEQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWE 96

Query: 61  NTRKASIQAQLMKLEEKMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEE 120
           N++KAS++A+L K+EE++ KKKA Y E MKNKI  IHK+ EEK+A  EA+R E  LK EE
Sbjct: 97  NSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEE 156

Query: 121 TAAKYRASGFTPKTL 136
            AAKYRA+G  P  L
Sbjct: 157 MAAKYRATGTAPTKL 171

The following BLAST results are available for this feature:

BLAST of CmaCh02G014720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFA5	9.6e-34	63.03	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1	[more]
P93788	1.3e-33	57.78	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
O80837	6.2e-33	56.20	Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1	[more]
Q9M2D8	2.4e-32	58.97	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P...	[more]
P93758	1.0e-06	33.03	Remorin 4.2 OS=Arabidopsis thaliana OX=3702 GN=REM4.2 PE=1 SV=1	[more]

BLAST of CmaCh02G014720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23750.1	6.8e-35	63.03	Remorin family protein	[more]
AT5G23750.2	6.8e-35	63.03	Remorin family protein	[more]
AT2G45820.1	4.4e-34	56.20	Remorin family protein	[more]
AT3G61260.1	1.7e-33	58.97	Remorin family protein	[more]
AT3G48940.1	3.2e-32	52.59	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 64..91
None	No IPR available	PANTHER	PTHR31775	OS02G0117200 PROTEIN	coord: 13..141
None	No IPR available	PANTHER	PTHR31775:SF28	REMORIN-LIKE	coord: 13..141
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 29..133 e-value: 3.1E-28 score: 97.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014720.1	CmaCh02G014720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress
cellular_component	GO:0016021	integral component of membrane