CmaCh02G014380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G014380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	E3 ubiquitin-protein ligase
Location	Cma_Chr02: 8277306 .. 8280138 (+)
RNA-Seq Expression	CmaCh02G014380
Synteny	CmaCh02G014380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTTTTCCGTCCTCCAGCGATGGCCGTTAGAAGCTCAACTTTCAGGCGACTCGGCGGCGAAACCTAGAGAGAAAATTTCCATTTTCCATTCATCCAAACAATATATCGCCGGGAAGGAAGAGCGTTGTTCTTTAATTTATAATCGTTTTTTTTTTTCTTTACTTTTGATTCTTCCTGACCTTTATACTCAGTGGAAAGTCGTACTCCCGCACGAAACCAAACCAACCATTCATTCTTTCTCTCTCTACAGAGAAAGAAAAAAGAGAGGGAAGCTTTCTTGGCCTTCTCTGCTTTCCTGCCATAGTCTGAAGGGGAAGAAGAGGGCTTTGAAAAGGAGTACACATCCTGTGTCTCCCTTTTGTTCCATTTGAATTGAATTCTCAATCGCTTTTTTCGATTCTTACCAATCGATCGAGTTCTCGGCGTGAAACGGTAAGATTCTAGTTCCTGGACTATGTATCTCTTTTGCTTTCGAATTGATTCTGATTATCGCTGCTTAATCAGAACCTCGTGTTGTGCGTTTTTATTTTTGGTTGTTCTTATTGGTTCTGTGTTGCTGAGGTGATTTTTGGATTCTCTGTAGGTTAACTTTGATGTGTATTTTATCAGTTGTTGCTAGAGAATCCGAATTTTTCGGCTTCTTGTTACTTTGATGTTATCGTGTTATTGATGAGTTATTGATTGCATTGACTCCGGTCTGTCTATACTGGTTCTTTAGGATTACTTCGTTCCTCTTGTGCCACTTCTATGATTATTACATCATATTTGCTGCTAGCTTTGTTGATCTATGATTCTCACATCATATTATGTAATTTTCTTTTATATCATATTCACTAGCGAACTTTGGCATAGCTTCTAATGCAGTTAAATTGATTTGAGCATGTTTTCTTTAACAGGCTTAACATTCTCTAAAATTTTGAGGGCATATTGCAACTAGTTCCGATGGATTTTTGGCGTGTTGTGTAGAAAAGAAAACTGAAATGGGAGGTTGCTGCTGTTGTTCCTCAAGAGGAACAGAATCAAATATTACACCAGGCTACTATTATGTCAGTATTGAATTTTTCATTTGATGTTTATTGTCATATTTTTATCAATCAAATTCTTTCTTTGTTAGCAAGAACTATGCAGCCATTATTTAGTGTTCGTTCATTTATTTATTATCATTGTCAACATGTCTAATTGCATATAGTTGTAGGTATTCCGATATAGCCTATGAGATAATTAACGTAATTTTCATCGTTGGCGGCCCCAATCTGAAACTGGTTGGAGTACGAGAGACGAAGTTTCTTTATTCAAGTACCTTTTGGTTAATTCAGCATCAATGTGTTTTCCAAAAAAAGTCTTCTGCCTTAGCATGTATCAACTTAGATTGCTTGTGACCATAGGAGATGCTTGTATACTACACCGCGAGTAAATCGTGAATATGAGAAACGTTCCATATGCTCAACTATTACACATGAGATGGTGGAAAGAATTTTCTTCCCATCGTCAACTTCCTTGCTCAAATCTCAAGACTGCCATTTCTGTTATTTATTCTTGGAGCTGATTGAACTTTATGCTCAACTGTTAACATGAGATGGTGGAAAGAATTTTCTTCCCATCATCAACTTCCTTGCTCAAATCTCAATTTACTTAAATCTAAGTTTTGAACTTTTGCTGCAGTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTGCTACCCCAGCATTTCCAACGGGGATTTTGGTTGATACAAATCTGGACACATCAATTCCGGACACTTATAGATCACCCCCATTGCCTATCCCGTATGATGTTGTTCTAACACACCCACATACTCCTCGTGCGGCTCAAGAAATTGTCAGCAATAAGAATGAAGCTACAGCTCAGACACCAAATACTGATGTAATTCAAGAAACAGCGTGCATAAACACACGGGAAACTTCAGCCAAATGTGATGCCATCGATGAATCAGACTGCAAGAAACACACGTTAAAGGAATCTGAAATTGGACTCTCAAAGGGTGTAGAATCTGTGGTCATACCTGTGGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGGTGAAGTTTTGCTAAACCTTTGTTAAGCTGCACAATACCAACTCACCAAACCGTGGATTTTTTTTTCAAACCTCTCATCTCTATAGCCAATGTTTGACATTTTAGTTGCTTGAACTAACAAGTCACCAGGTTATCGCTTTCTCAATGGCTGCACAGTTCCTTTCCCTTTCAATTCATCACTTTCCATTGTTTTATGCAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGTGATCAGGTGTGTCTCAGGCTCTCAGTTTATGTTTTATCGTTTGTCACTCATACTCATTAGTTCTTAACGCTTTAAGAAGATTTTTTTTCCCTCTCCTAATCATTTCCCCCTGAAATGCAGGAAATGGTTTTTAGCCCTCCAATTGATTAGTAACAACAAGAAAATCAGCCAAGTGTTTTCTCAGATTGAAGTAAAGTTGAAAGTATAGATTGTGAAGTTCTTGTGATTTTGCTTCAGCTGGCAGCTTCAGGTTTCTTTTAGTTGCTTTCCTTTTTCTTTTTACTTAATGAATTGCTCATTCCCGTTGCATTTTCTCTGTGAATTTGTTCTCTGAACATAGAATGGGGGGGAAATTGGGAGAATGATTCTTCTTTCTTTTGTTTCTTTTTTATTTTGGGTGGGAGTAGTGGGAGAATGTAAATACAGTTTGTGCAATATAGTATATCTGAGC

mRNA sequence

TGGTTTTTCCGTCCTCCAGCGATGGCCGTTAGAAGCTCAACTTTCAGGCGACTCGGCGGCGAAACCTAGAGAGAAAATTTCCATTTTCCATTCATCCAAACAATATATCGCCGGGAAGGAAGAGCGTTGTTCTTTAATTTATAATCGTTTTTTTTTTTCTTTACTTTTGATTCTTCCTGACCTTTATACTCAGTGGAAAGTCGTACTCCCGCACGAAACCAAACCAACCATTCATTCTTTCTCTCTCTACAGAGAAAGAAAAAAGAGAGGGAAGCTTTCTTGGCCTTCTCTGCTTTCCTGCCATAGTCTGAAGGGGAAGAAGAGGGCTTTGAAAAGGAGTACACATCCTGTGTCTCCCTTTTGTTCCATTTGAATTGAATTCTCAATCGCTTTTTTCGATTCTTACCAATCGATCGAGTTCTCGGCGTGAAACGGCTTAACATTCTCTAAAATTTTGAGGGCATATTGCAACTAGTTCCGATGGATTTTTGGCGTGTTGTGTAGAAAAGAAAACTGAAATGGGAGGTTGCTGCTGTTGTTCCTCAAGAGGAACAGAATCAAATATTACACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTGCTACCCCAGCATTTCCAACGGGGATTTTGGTTGATACAAATCTGGACACATCAATTCCGGACACTTATAGATCACCCCCATTGCCTATCCCGTATGATGTTGTTCTAACACACCCACATACTCCTCGTGCGGCTCAAGAAATTGTCAGCAATAAGAATGAAGCTACAGCTCAGACACCAAATACTGATGTAATTCAAGAAACAGCGTGCATAAACACACGGGAAACTTCAGCCAAATGTGATGCCATCGATGAATCAGACTGCAAGAAACACACGTTAAAGGAATCTGAAATTGGACTCTCAAAGGGTGTAGAATCTGTGGTCATACCTGTGGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGTGATCAGGAAATGGTTTTTAGCCCTCCAATTGATTAGTAACAACAAGAAAATCAGCCAAGTGTTTTCTCAGATTGAAGTAAAGTTGAAAGTATAGATTGTGAAGTTCTTGTGATTTTGCTTCAGCTGGCAGCTTCAGGTTTCTTTTAGTTGCTTTCCTTTTTCTTTTTACTTAATGAATTGCTCATTCCCGTTGCATTTTCTCTGTGAATTTGTTCTCTGAACATAGAATGGGGGGGAAATTGGGAGAATGATTCTTCTTTCTTTTGTTTCTTTTTTATTTTGGGTGGGAGTAGTGGGAGAATGTAAATACAGTTTGTGCAATATAGTATATCTGAGC

Coding sequence (CDS)

ATGGGAGGTTGCTGCTGTTGTTCCTCAAGAGGAACAGAATCAAATATTACACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTGCTACCCCAGCATTTCCAACGGGGATTTTGGTTGATACAAATCTGGACACATCAATTCCGGACACTTATAGATCACCCCCATTGCCTATCCCGTATGATGTTGTTCTAACACACCCACATACTCCTCGTGCGGCTCAAGAAATTGTCAGCAATAAGAATGAAGCTACAGCTCAGACACCAAATACTGATGTAATTCAAGAAACAGCGTGCATAAACACACGGGAAACTTCAGCCAAATGTGATGCCATCGATGAATCAGACTGCAAGAAACACACGTTAAAGGAATCTGAAATTGGACTCTCAAAGGGTGTAGAATCTGTGGTCATACCTGTGGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGTGATCAGGAAATGGTTTTTAGCCCTCCAATTGATTAG

Protein sequence

MGGCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDTYRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDAIDESDCKKHTLKESEIGLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSPPID

Homology

[Close]

BLAST of CmaCh02G014380 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.5e-39
Identity = 95/207 (45.89%), Postives = 122/207 (58.94%), Query Frame = 0


Query: 1   MGGCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDT 60
           MGG CC SSR +    TP YYY P + EE VP  +      AF TG+LVD  L+TSIPDT
Sbjct: 1   MGG-CCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDT 60

Query: 61  YRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDA 120
           +   P P+PYD++L  P                  Q  +++ I+     ++ ET A C+ 
Sbjct: 61  F-CAPAPLPYDLLLGRP------------------QCTDSESIKGRMSGSSFETLATCED 120

Query: 121 IDESDCKKHTLKESEI------GLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCE 180
           + ESDCK  TL  S I        SK     ++  EEED CPIC E+YD ENP+LTTKCE
Sbjct: 121 LGESDCK--TLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCE 180

Query: 181 HHFHLACILEWMERSDICPVCDQEMVF 202
           H FHL+C+LEW+ERSD CP+CD+E+VF
Sbjct: 181 HEFHLSCLLEWIERSDRCPICDKEVVF 185

[Close]

BLAST of CmaCh02G014380 vs. ExPASy Swiss-Prot
Match: Q8LE94 (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 63/186 (33.87%), Postives = 98/186 (52.69%), Query Frame = 0


Query: 33  LSSPLSATPAFPTGILVDTNLDTSIPDTYRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNE 92
           L S + AT      I   ++ D  + + +RS P P+PYD        PR  + +VS + +
Sbjct: 53  LPSSVQAT----ASITSSSSHDNFLSEAFRSTPRPLPYDA------DPRYFRSLVSRREK 112

Query: 93  ATAQT--------PNTDVIQETACINTRETSAKCDAIDESDCKKHTLKESEIGL----SK 152
            ++ +         ++D   E+  +   + +     + + D K+    +S + +    SK
Sbjct: 113 GSSHSHEEVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSK 172

Query: 153 GV----ESVVIPVEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCD 203
            +    E++ I  E+EDVCP CLEEY  ENPK+ TKC HHFHL+CI EWMERS+ CPVC 
Sbjct: 173 SIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCG 228

[Close]

BLAST of CmaCh02G014380 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-18
Identity = 67/201 (33.33%), Postives = 96/201 (47.76%), Query Frame = 0


Query: 3   GCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDTYR 62
           GCCCC     ES+         R  +EH+PLS    ATP             +S+ + Y 
Sbjct: 2   GCCCCLPSIPESS---------RTIDEHLPLS---RATP-------------SSLSNAYS 61

Query: 63  SPPLPIPYDVVLTHPHTPRAAQEIVSNKNEATAQTPN-TDVIQETACINTRETSAKCDAI 122
           SP  P P  + +T+ +   +  ++   +  ++  +P  T V+ E       + +   D +
Sbjct: 62  SPLSP-PIPLAITNINLQTSPPKLPRTQGNSSEASPGLTQVVPE-------KKTWHVDDL 121

Query: 123 DESDCKKHTLKESEIGLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCEHHFHLAC 182
            + + KK                     E  D CPICLEEY+ +NPKL TKC H FHLAC
Sbjct: 122 TDFELKKQYR------------------EAIDECPICLEEYEIDNPKLLTKCGHDFHLAC 151

Query: 183 ILEWMERSDICPVCDQEMVFS 203
           IL WMERS+ CPVCD+E+V +
Sbjct: 182 ILAWMERSEACPVCDKELVLT 151

[Close]

BLAST of CmaCh02G014380 vs. ExPASy Swiss-Prot
Match: Q4TU14 (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-10
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 136 IGLSKGVESVVIPVEE-----EDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSD 195
           IG S    S ++   +     +D C ICLE +  ++P   T C+H +HL CI+EW +RS 
Sbjct: 22  IGSSSSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSK 81

Query: 196 ICPVCDQEMVFSPP 205
            CP+C Q  V   P
Sbjct: 82  ECPICWQLFVLRDP 95

[Close]

BLAST of CmaCh02G014380 vs. ExPASy Swiss-Prot
Match: Q9ZT42 (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 152 EDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSPP 205
           +D C ICLE +   +P   T C+H +HL CILEW +RS  CP+C Q +    P
Sbjct: 30  DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDP 82

[Close]

BLAST of CmaCh02G014380 vs. TAIR 10
Match: AT5G41350.1 (RING/U-box superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-50
Identity = 111/213 (52.11%), Postives = 139/213 (65.26%), Query Frame = 0


Query: 1   MGGCCCC-SSRGTESNITPGYYYYPRASEEHVPLSSPLSAT-PAFPTG-ILVDTNLDTSI 60
           MGGCCCC SSR  + +  P YYYYPRA+EE VPLSS  + T  A  TG ++VDTNL+TS 
Sbjct: 1   MGGCCCCSSSRRADVDNGPAYYYYPRATEERVPLSSAHNRTSSAISTGVVVVDTNLETSS 60

Query: 61  PDTYRSPPLPIPYDVVLTHPHTPRAAQEIVS-NKNEATAQTPNTDVIQETACINTRETSA 120
           PD Y  PPLP P+DV +  P TP + +E    +  E +  + NT+  QET    T     
Sbjct: 61  PDAYIPPPLPTPFDVPIGIPQTPASGEEATCVDIREVSVDSANTESAQETVDGITLGVPT 120

Query: 121 KCDAIDESDCKKHT---LKESEIGLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKC 180
            C +  E+D K  T   L+ +E    K  ++V IP+EEE+ CPICLEEYD ENPKL  KC
Sbjct: 121 TC-SHKETDSKIQTEIDLESTEEIDPKLSKAVFIPIEEEEDCPICLEEYDIENPKLVAKC 180

Query: 181 EHHFHLACILEWMERSDICPVCDQEMVFSPPID 207
           +HHFHLACILEWMERS+ CPVC++EMVF   +D
Sbjct: 181 DHHFHLACILEWMERSETCPVCNKEMVFDSTLD 212

[Close]

BLAST of CmaCh02G014380 vs. TAIR 10
Match: AT4G00335.1 (RING-H2 finger B1A )

HSP 1 Score: 162.2 bits (409), Expect = 4.6e-40
Identity = 95/207 (45.89%), Postives = 122/207 (58.94%), Query Frame = 0


Query: 1   MGGCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDT 60
           MGG CC SSR +    TP YYY P + EE VP  +      AF TG+LVD  L+TSIPDT
Sbjct: 1   MGG-CCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDT 60

Query: 61  YRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDA 120
           +   P P+PYD++L  P                  Q  +++ I+     ++ ET A C+ 
Sbjct: 61  F-CAPAPLPYDLLLGRP------------------QCTDSESIKGRMSGSSFETLATCED 120

Query: 121 IDESDCKKHTLKESEI------GLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCE 180
           + ESDCK  TL  S I        SK     ++  EEED CPIC E+YD ENP+LTTKCE
Sbjct: 121 LGESDCK--TLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCE 180

Query: 181 HHFHLACILEWMERSDICPVCDQEMVF 202
           H FHL+C+LEW+ERSD CP+CD+E+VF
Sbjct: 181 HEFHLSCLLEWIERSDRCPICDKEVVF 185

[Close]

BLAST of CmaCh02G014380 vs. TAIR 10
Match: AT4G00335.2 (RING-H2 finger B1A )

HSP 1 Score: 162.2 bits (409), Expect = 4.6e-40
Identity = 95/207 (45.89%), Postives = 122/207 (58.94%), Query Frame = 0


Query: 1   MGGCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDT 60
           MGG CC SSR +    TP YYY P + EE VP  +      AF TG+LVD  L+TSIPDT
Sbjct: 1   MGG-CCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDT 60

Query: 61  YRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDA 120
           +   P P+PYD++L  P                  Q  +++ I+     ++ ET A C+ 
Sbjct: 61  F-CAPAPLPYDLLLGRP------------------QCTDSESIKGRMSGSSFETLATCED 120

Query: 121 IDESDCKKHTLKESEI------GLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCE 180
           + ESDCK  TL  S I        SK     ++  EEED CPIC E+YD ENP+LTTKCE
Sbjct: 121 LGESDCK--TLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCE 180

Query: 181 HHFHLACILEWMERSDICPVCDQEMVF 202
           H FHL+C+LEW+ERSD CP+CD+E+VF
Sbjct: 181 HEFHLSCLLEWIERSDRCPICDKEVVF 185

[Close]

BLAST of CmaCh02G014380 vs. TAIR 10
Match: AT4G00335.3 (RING-H2 finger B1A )

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-38
Identity = 92/203 (45.32%), Postives = 118/203 (58.13%), Query Frame = 0


Query: 1   MGGCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDT 60
           MGG CC SSR +    TP YYY P + EE VP  +      AF TG+LVD  L+TSIPDT
Sbjct: 1   MGG-CCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDT 60

Query: 61  YRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDA 120
           +   P P+PYD++L  P                  Q  +++ I+     ++ ET A C+ 
Sbjct: 61  F-CAPAPLPYDLLLGRP------------------QCTDSESIKGRMSGSSFETLATCED 120

Query: 121 IDESDCKKHTLKESEI------GLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCE 180
           + ESDCK  TL  S I        SK     ++  EEED CPIC E+YD ENP+LTTKCE
Sbjct: 121 LGESDCK--TLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCE 180

Query: 181 HHFHLACILEWMERSDICPVCDQ 198
           H FHL+C+LEW+ERSD CP+CD+
Sbjct: 181 HEFHLSCLLEWIERSDRCPICDK 181

[Close]

BLAST of CmaCh02G014380 vs. TAIR 10
Match: AT3G02290.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 63/186 (33.87%), Postives = 98/186 (52.69%), Query Frame = 0


Query: 33  LSSPLSATPAFPTGILVDTNLDTSIPDTYRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNE 92
           L S + AT      I   ++ D  + + +RS P P+PYD        PR  + +VS + +
Sbjct: 53  LPSSVQAT----ASITSSSSHDNFLSEAFRSTPRPLPYDA------DPRYFRSLVSRREK 112

Query: 93  ATAQT--------PNTDVIQETACINTRETSAKCDAIDESDCKKHTLKESEIGL----SK 152
            ++ +         ++D   E+  +   + +     + + D K+    +S + +    SK
Sbjct: 113 GSSHSHEEVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSK 172

Query: 153 GV----ESVVIPVEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCD 203
            +    E++ I  E+EDVCP CLEEY  ENPK+ TKC HHFHL+CI EWMERS+ CPVC 
Sbjct: 173 SIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCG 228

The following BLAST results are available for this feature:

BLAST of CmaCh02G014380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HIJ8	6.5e-39	45.89	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q8LE94	1.6e-21	33.87	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]
Q93ZF6	2.8e-18	33.33	E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ...	[more]
Q4TU14	6.3e-10	37.84	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ...	[more]
Q9ZT42	1.8e-09	45.28	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ...	[more]

BLAST of CmaCh02G014380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41350.1	1.7e-50	52.11	RING/U-box superfamily protein	[more]
AT4G00335.1	4.6e-40	45.89	RING-H2 finger B1A	[more]
AT4G00335.2	4.6e-40	45.89	RING-H2 finger B1A	[more]
AT4G00335.3	3.3e-38	45.32	RING-H2 finger B1A	[more]
AT3G02290.1	1.1e-22	33.87	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 155..195 e-value: 6.3E-8 score: 42.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 154..195 e-value: 1.3E-11 score: 44.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 155..196 score: 12.061441
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 149..202 e-value: 8.7E-16 score: 59.0
None	No IPR available	PANTHER	PTHR46463:SF37	ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN	coord: 1..206
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 1..206
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 149..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014380.1	CmaCh02G014380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004842	ubiquitin-protein transferase activity