CmaCh02G014160 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G014160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Reticulon-like protein
Location	Cma_Chr02: 8175229 .. 8177585 (-)
RNA-Seq Expression	CmaCh02G014160
Synteny	CmaCh02G014160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCCCGCCCTGGTTTTCAACGGCTCAGATTCTTCTTCTAGATTCATCCATTATTCATTGACACACAGCAACGGAATCACACCTTGCTCTGGGTTTGTGGATTTAGCGGAACACGGACAAAAAAGGGGTTTTCAGTTTTCATTTTGATCCGTTTTTTCTCACTTCCTGAACGGTTGCAAGTGATTTTTGGGATCTGTTGTAGCTTGTTCTTGGTGATTCTGGCAGCCATGACGGAGCATCACGAGCACGAGCATGAGGAGCCCAAAGCCGAGTCGTTGATTGACAAGATTGCCGAGAAGATTCACGCTCATGATTCCTCTTCTTCCGATTCCGAGGATGATAAGGGGAGTGCTTCTGCTACTATCAAATCTAAGATTTATCGCCTCTTCGGCAGGGAAAGGCCCGTCCACAAGGTTTTTGGTGGTGGGAAACGTAAGTAATTCTCATTATTTTGTTTTCAGAGTTTGCTCTCATCTCCTTATGGTGGAAATTATGTGACTGGTTTTCGTGTTTCGATTTCAGTGTCTTGGTTTGTTTTGTTTACTTCTAAGTGGATTTACTGTTTGAAGAAATTTCAGGATGTTGAATTCGGATTATCTTTGAATTTCTTCTTTTTCTATTGAAATTATTTGATTCCGAAGTGGATCGGTTATCTCTCAGAGAAACTTTCAGTTGAGTTTCATAGATCTAGATCTATTTACAGTTCTGGCTTAGGCTTTTAAGTCGATCCTGTTTCATTCTCCTATACTTGTTCTACAATGCTCTATTTCTTGGATTTTCAATTTCGGGATGCGAGATTGCTAGATATTATCTTTTGCTTGATTTCTTTAGCATGGTGTCATTGTTCTTTTACAAAATTGAACTACGAACTTCAAACCATTCGAGAATTGTCGAGTATTAATCCTCTTCCCGTTCCATGGTAGCACGAAAATCACTCTGGGTTAAGAAAATTTTGATGTTATACGAAGTCAATTTTCGTTGATGTATCTCATTATCATTGTTTTCCTTCCTTTATCCCAATCTCTTCTCTACAGCGGCTGATATCTTCCTGTGGAGAAACAAAAAGGTCTCCGGTGGAGTTCTAGGAGGAGCCACAGTTGCATGGATTTTGTTTGAGCTGCTTGAGTATCACTTTCTGACCTTGATTTGCCACATTTTGATGGCTGCTCTGGCAGTAGTGTTTTTGTGGTCTAATGCTTCTTTCTTCATTAACAAGTATGTTTTTCTAGCTTGCCATTCAATTCATCTTTTGAATGTTTGCTTAGCCGCTGTCTATGGCTGACACCTTTTCCGCACAGGTCTCTGCCACACATCCCTCAAGTTCACATTCCAGAGGGGCCAGTTAAAGAGATTGCCTCTGCTTTGAGAGTTGAGATCAATAGGGGCATCGCTGTGTTGAGAGAAATTGCATCTGGAAGAGATCTGAAGAGCTTTCTTTCTGTATGTTAACTTCTACCTCTTGGAATCTTGTTCATAAAGGCAGTTTCTAGCTTTAAGAAATCATCTCATGAAAATTAAGCTTATGTTATACGATTTTATCTTAAGAACTCATACTCTCATAATTTTGTTTGCTAGGCAATTGCTGGTTTGTGGGTTCTGTCCATCGTAGGAAGTTGGTTCAACTTCCTTACCCTGCTATATATTGGTGAGGAAGTTGATACATAATTAGTTGTGAATTCCCATTAGTCTTGTCCATTTTAGTGACTTTTGTTGTGCAATCAAATATGTAACAGGAGTCATTTTGCTCTTCACTGTGCCTGTGTTCTACGAGAAATACGACGACAAGGTCGATGCGTATGCAGAGAAGGCAATGGCAGAGCTGAAGAAGCAGTATGCAGTGTTTGATGCAAAAGTGTTGTCTAAAATCCCAAGAGGACCACTGAAGGACAAGAAGATTGCCTGAGGAGGCGATGTCCGGAGTGTTGTGGTGGTAGCAGGTCCTGTTTTTTATCAAACTCTATGAACTTGGTAGGCTTTTTGTCGTTGGCGTTCTGAAGTTTCATCCATGAAAGAATCTGTTTTTTAGTTGTGTTCTCATCGGTGGGGTTGGCAATGTGGACTAATTTGTGGATTGCTGATAATACACATGATTTTGTTACACTATTTAATGGCCCTGTTTTATATGTTAAGCCTTGGTGAAGCACAATTTGATAGGTTTGATTGATGATATAAAGTGAGAGTTTCATTCTGGTTGGGCTATTAGTGATGTGAACTGTGCAGGGATAAGAATGTTGTGAGATCTTCTCATGGATCCTTCATTCTACAAGCATTTCATAATTTTGTTGTTCTTTTTTTTGTATTATTATAATTTTAATTTTTTTATGGAATGCTAATGGATGATTTAGTTATTAAGACAA

mRNA sequence

TGGCCCGCCCTGGTTTTCAACGGCTCAGATTCTTCTTCTAGATTCATCCATTATTCATTGACACACAGCAACGGAATCACACCTTGCTCTGGGTTTGTGGATTTAGCGGAACACGGACAAAAAAGGGGTTTTCAGTTTTCATTTTGATCCGTTTTTTCTCACTTCCTGAACGGTTGCAAGTGATTTTTGGGATCTGTTGTAGCTTGTTCTTGGTGATTCTGGCAGCCATGACGGAGCATCACGAGCACGAGCATGAGGAGCCCAAAGCCGAGTCGTTGATTGACAAGATTGCCGAGAAGATTCACGCTCATGATTCCTCTTCTTCCGATTCCGAGGATGATAAGGGGAGTGCTTCTGCTACTATCAAATCTAAGATTTATCGCCTCTTCGGCAGGGAAAGGCCCGTCCACAAGGTTTTTGGTGGTGGGAAACCGGCTGATATCTTCCTGTGGAGAAACAAAAAGGTCTCCGGTGGAGTTCTAGGAGGAGCCACAGTTGCATGGATTTTGTTTGAGCTGCTTGAGTATCACTTTCTGACCTTGATTTGCCACATTTTGATGGCTGCTCTGGCAGTAGTGTTTTTGTGGTCTAATGCTTCTTTCTTCATTAACAAGTCTCTGCCACACATCCCTCAAGTTCACATTCCAGAGGGGCCAGTTAAAGAGATTGCCTCTGCTTTGAGAGTTGAGATCAATAGGGGCATCGCTGTGTTGAGAGAAATTGCATCTGGAAGAGATCTGAAGAGCTTTCTTTCTGCAATTGCTGGTTTGTGGGTTCTGTCCATCGTAGGAAGTTGGTTCAACTTCCTTACCCTGCTATATATTGGAGTCATTTTGCTCTTCACTGTGCCTGTGTTCTACGAGAAATACGACGACAAGGTCGATGCGTATGCAGAGAAGGCAATGGCAGAGCTGAAGAAGCAGTATGCAGTGTTTGATGCAAAAGTGTTGTCTAAAATCCCAAGAGGACCACTGAAGGACAAGAAGATTGCCTGAGGAGGCGATGTCCGGAGTGTTGTGGTGGTAGCAGGTCCTGTTTTTTATCAAACTCTATGAACTTGGTAGGCTTTTTGTCGTTGGCGTTCTGAAGTTTCATCCATGAAAGAATCTGTTTTTTAGTTGTGTTCTCATCGGTGGGGTTGGCAATGTGGACTAATTTGTGGATTGCTGATAATACACATGATTTTGTTACACTATTTAATGGCCCTGTTTTATATGTTAAGCCTTGGTGAAGCACAATTTGATAGGTTTGATTGATGATATAAAGTGAGAGTTTCATTCTGGTTGGGCTATTAGTGATGTGAACTGTGCAGGGATAAGAATGTTGTGAGATCTTCTCATGGATCCTTCATTCTACAAGCATTTCATAATTTTGTTGTTCTTTTTTTTGTATTATTATAATTTTAATTTTTTTATGGAATGCTAATGGATGATTTAGTTATTAAGACAA

Coding sequence (CDS)

ATGACGGAGCATCACGAGCACGAGCATGAGGAGCCCAAAGCCGAGTCGTTGATTGACAAGATTGCCGAGAAGATTCACGCTCATGATTCCTCTTCTTCCGATTCCGAGGATGATAAGGGGAGTGCTTCTGCTACTATCAAATCTAAGATTTATCGCCTCTTCGGCAGGGAAAGGCCCGTCCACAAGGTTTTTGGTGGTGGGAAACCGGCTGATATCTTCCTGTGGAGAAACAAAAAGGTCTCCGGTGGAGTTCTAGGAGGAGCCACAGTTGCATGGATTTTGTTTGAGCTGCTTGAGTATCACTTTCTGACCTTGATTTGCCACATTTTGATGGCTGCTCTGGCAGTAGTGTTTTTGTGGTCTAATGCTTCTTTCTTCATTAACAAGTCTCTGCCACACATCCCTCAAGTTCACATTCCAGAGGGGCCAGTTAAAGAGATTGCCTCTGCTTTGAGAGTTGAGATCAATAGGGGCATCGCTGTGTTGAGAGAAATTGCATCTGGAAGAGATCTGAAGAGCTTTCTTTCTGCAATTGCTGGTTTGTGGGTTCTGTCCATCGTAGGAAGTTGGTTCAACTTCCTTACCCTGCTATATATTGGAGTCATTTTGCTCTTCACTGTGCCTGTGTTCTACGAGAAATACGACGACAAGGTCGATGCGTATGCAGAGAAGGCAATGGCAGAGCTGAAGAAGCAGTATGCAGTGTTTGATGCAAAAGTGTTGTCTAAAATCCCAAGAGGACCACTGAAGGACAAGAAGATTGCCTGA

Protein sequence

MTEHHEHEHEEPKAESLIDKIAEKIHAHDSSSSDSEDDKGSASATIKSKIYRLFGRERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLREIASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAVFDAKVLSKIPRGPLKDKKIA

Homology

[Close]

BLAST of CmaCh02G014160 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.2e-96
Identity = 180/269 (66.91%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 1   MTEHHEHEHEEP---------KAESLIDKIAEKIH----AHDSSSSDSEDDKGSASA--- 60
           M + H+HE   P         + ESL++K++EKIH    +  SSSSD E++K S+S+   
Sbjct: 1   MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPK 60

Query: 61  TIKSKIYRLFGRERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLT 120
           ++KSK+YRLFGRERPVHKV GGGKPADIF+W++KK+SGGV GGATVAW+LFEL+EYH LT
Sbjct: 61  SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLT 120

Query: 121 LICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLRE 180
           L+CH+++ ALAV+FLWSNA+ FI+KS P IP+VHIPE P+ ++AS LR+EINRGI+ LRE
Sbjct: 121 LLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLRE 180

Query: 181 IASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEK 240
           IASGRD+K FLSAIAGLWVLSI+G  ++FLTL YI ++LLFTVP+FY+KY+DKVD+Y EK
Sbjct: 181 IASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEK 240

Query: 241 AMAELKKQYAVFDAKVLSKIPRGPLKDKK 254
           AMAELKKQYAV DAKV SKIPRGPLKDKK
Sbjct: 241 AMAELKKQYAVLDAKVFSKIPRGPLKDKK 269

[Close]

BLAST of CmaCh02G014160 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.7e-92
Identity = 178/273 (65.20%), Postives = 215/273 (78.75%), Query Frame = 0


Query: 1   MTEHHEHEH---------EEPKAESLIDKIAEKIH-----AHDSSSSDSEDDK------G 60
           M E H+H+          E  + ESL+DKI+EKIH     +  SSSSD ED+K       
Sbjct: 1   MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPS 60

Query: 61  SASATIKSKIYRLFGRERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEY 120
           S S+++KSK+YRLFGRE+PVHKV GGGKPADIF+W+NKK+SGGVLGGAT AW++FEL+EY
Sbjct: 61  SPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEY 120

Query: 121 HFLTLICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIA 180
           H LTL+CH+++  LAV+FLWSNA+ FINKS P IP+VHIPE P+ ++AS LR+EINRG +
Sbjct: 121 HLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFS 180

Query: 181 VLREIASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDA 240
            LREIASGRDLK FL AIAGLWVLSI+G  FNFLTL YI ++LLFTVP+ Y+KY+DKVD 
Sbjct: 181 SLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDP 240

Query: 241 YAEKAMAELKKQYAVFDAKVLSKIPRGPLKDKK 254
             EKAM ELKKQYAV D KVLSKIP GPLK+KK
Sbjct: 241 LGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKK 273

[Close]

BLAST of CmaCh02G014160 vs. ExPASy Swiss-Prot
Match: Q9FFS0 (Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-89
Identity = 173/262 (66.03%), Postives = 204/262 (77.86%), Query Frame = 0


Query: 1   MTEHHEHEHEEPKAESLIDKIAEKIHAH-DSSS-SDSEDDK---GSASATIKSKIYRLFG 60
           M E H+HE      ES+++KI EKIH H DSSS SDS+DDK    S+S++ KSKIYRLFG
Sbjct: 1   MVEDHKHE------ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFG 60

Query: 61  RERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALA 120
           RE+PVHKV GGGKPADIFLWRNKKVSGGVLG  T +W+LFEL EYH L  +CH  + ALA
Sbjct: 61  REKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALA 120

Query: 121 VVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLREIASGRDLKSFL 180
            +FLWSNA  FI+KS PHIP+VHIPE P+ ++ S LR+EINRG+ +LR IASG+D+K F+
Sbjct: 121 ALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFI 180

Query: 181 SAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAV 240
             IAGLWVLSI+GS +NFLTL Y   +LLFT+PV YEKY+DKVDAY EKAM E+KKQYAV
Sbjct: 181 LVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAV 240

Query: 241 FDAKVL----SKIPRGPLKDKK 254
            D KVL    SKIPRG L  KK
Sbjct: 241 LDEKVLRKVISKIPRGALNKKK 256

[Close]

BLAST of CmaCh02G014160 vs. ExPASy Swiss-Prot
Match: Q9SH59 (Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-87
Identity = 176/254 (69.29%), Postives = 205/254 (80.71%), Query Frame = 0


Query: 1   MTEHHEHEHEEPKAESLIDKIAEKIHAHD---SSSSDSEDDKGSASATIKSKIYRLFGRE 60
           M E H+HE      ES+++KI+EKIH HD   SSSSDS+DDK SAS  +K+KIYRLFGRE
Sbjct: 1   MAEEHKHE------ESIMEKISEKIHGHDDSSSSSSDSDDDKNSAS--LKTKIYRLFGRE 60

Query: 61  RPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALAVV 120
           +P+HK+FGGGKPADIFLWRNKKVSGGVLG ATV+WILFELLEY+ LTL  HI + ALAV+
Sbjct: 61  QPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVL 120

Query: 121 FLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLREIASGRDLKSFLSA 180
           FLWS+AS FI+KS  HIP+VHIPE  V ++AS LR+EINRG  VLR+IASGRDLK FL  
Sbjct: 121 FLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLV 180

Query: 181 IAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAVFD 240
           IAGLWVLS VGS  NFLTL+YI  +LLFT+PV YEKY+DKVD + EKAM E+KKQY  FD
Sbjct: 181 IAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFD 240

Query: 241 AKVL----SKIPRG 248
            KVL    SKIP+G
Sbjct: 241 VKVLSKVMSKIPKG 246

[Close]

BLAST of CmaCh02G014160 vs. ExPASy Swiss-Prot
Match: O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.2e-80
Identity = 151/248 (60.89%), Postives = 192/248 (77.42%), Query Frame = 0


Query: 6   EHEHEEPKAESLIDKIAEKIHAHD-SSSSDSEDDKGSASATIKSKIYRLFGRERPVHKVF 65
           E E   P  ESL++KI+EKIH HD SSSS+SE +K  + + +K+KIYR+FGRE+PVHKV 
Sbjct: 4   EIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVL 63

Query: 66  GGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALAVVFLWSNAS 125
           GGGKPAD+FLWR+KK+SG VLG AT  W+LFEL+EYH L+L+CHI + AL  +FLWSNA 
Sbjct: 64  GGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAH 123

Query: 126 FFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLREIASGRDLKSFLSAIAGLWVL 185
             INK+ P IP++H+PE     +AS+LR E+N+   +LR IA GRDLK FL  + GLW++
Sbjct: 124 TLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWII 183

Query: 186 SIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAVFDAKVLSKI 245
           S+VG+WFNFLTL+YI  ++L TVP+ YEK++DKVD  AEKAM EL+KQY VFD KVLSKI
Sbjct: 184 SVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKI 243

Query: 246 PRGPLKDK 253
           P   LK K
Sbjct: 244 PIASLKAK 251

[Close]

BLAST of CmaCh02G014160 vs. TAIR 10
Match: AT4G11220.1 (VIRB2-interacting protein 2 )

HSP 1 Score: 352.8 bits (904), Expect = 2.3e-97
Identity = 180/269 (66.91%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 1   MTEHHEHEHEEP---------KAESLIDKIAEKIH----AHDSSSSDSEDDKGSASA--- 60
           M + H+HE   P         + ESL++K++EKIH    +  SSSSD E++K S+S+   
Sbjct: 1   MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPK 60

Query: 61  TIKSKIYRLFGRERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLT 120
           ++KSK+YRLFGRERPVHKV GGGKPADIF+W++KK+SGGV GGATVAW+LFEL+EYH LT
Sbjct: 61  SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLT 120

Query: 121 LICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLRE 180
           L+CH+++ ALAV+FLWSNA+ FI+KS P IP+VHIPE P+ ++AS LR+EINRGI+ LRE
Sbjct: 121 LLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLRE 180

Query: 181 IASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEK 240
           IASGRD+K FLSAIAGLWVLSI+G  ++FLTL YI ++LLFTVP+FY+KY+DKVD+Y EK
Sbjct: 181 IASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEK 240

Query: 241 AMAELKKQYAVFDAKVLSKIPRGPLKDKK 254
           AMAELKKQYAV DAKV SKIPRGPLKDKK
Sbjct: 241 AMAELKKQYAVLDAKVFSKIPRGPLKDKK 269

[Close]

BLAST of CmaCh02G014160 vs. TAIR 10
Match: AT4G23630.1 (VIRB2-interacting protein 1 )

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-93
Identity = 178/273 (65.20%), Postives = 215/273 (78.75%), Query Frame = 0


Query: 1   MTEHHEHEH---------EEPKAESLIDKIAEKIH-----AHDSSSSDSEDDK------G 60
           M E H+H+          E  + ESL+DKI+EKIH     +  SSSSD ED+K       
Sbjct: 1   MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPS 60

Query: 61  SASATIKSKIYRLFGRERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEY 120
           S S+++KSK+YRLFGRE+PVHKV GGGKPADIF+W+NKK+SGGVLGGAT AW++FEL+EY
Sbjct: 61  SPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEY 120

Query: 121 HFLTLICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIA 180
           H LTL+CH+++  LAV+FLWSNA+ FINKS P IP+VHIPE P+ ++AS LR+EINRG +
Sbjct: 121 HLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFS 180

Query: 181 VLREIASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDA 240
            LREIASGRDLK FL AIAGLWVLSI+G  FNFLTL YI ++LLFTVP+ Y+KY+DKVD 
Sbjct: 181 SLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDP 240

Query: 241 YAEKAMAELKKQYAVFDAKVLSKIPRGPLKDKK 254
             EKAM ELKKQYAV D KVLSKIP GPLK+KK
Sbjct: 241 LGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKK 273

[Close]

BLAST of CmaCh02G014160 vs. TAIR 10
Match: AT5G41600.1 (VIRB2-interacting protein 3 )

HSP 1 Score: 330.5 bits (846), Expect = 1.2e-90
Identity = 173/262 (66.03%), Postives = 204/262 (77.86%), Query Frame = 0


Query: 1   MTEHHEHEHEEPKAESLIDKIAEKIHAH-DSSS-SDSEDDK---GSASATIKSKIYRLFG 60
           M E H+HE      ES+++KI EKIH H DSSS SDS+DDK    S+S++ KSKIYRLFG
Sbjct: 1   MVEDHKHE------ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFG 60

Query: 61  RERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALA 120
           RE+PVHKV GGGKPADIFLWRNKKVSGGVLG  T +W+LFEL EYH L  +CH  + ALA
Sbjct: 61  REKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALA 120

Query: 121 VVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLREIASGRDLKSFL 180
            +FLWSNA  FI+KS PHIP+VHIPE P+ ++ S LR+EINRG+ +LR IASG+D+K F+
Sbjct: 121 ALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFI 180

Query: 181 SAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAV 240
             IAGLWVLSI+GS +NFLTL Y   +LLFT+PV YEKY+DKVDAY EKAM E+KKQYAV
Sbjct: 181 LVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAV 240

Query: 241 FDAKVL----SKIPRGPLKDKK 254
            D KVL    SKIPRG L  KK
Sbjct: 241 LDEKVLRKVISKIPRGALNKKK 256

[Close]

BLAST of CmaCh02G014160 vs. TAIR 10
Match: AT1G64090.1 (Reticulan like protein B3 )

HSP 1 Score: 324.3 bits (830), Expect = 8.6e-89
Identity = 176/254 (69.29%), Postives = 205/254 (80.71%), Query Frame = 0


Query: 1   MTEHHEHEHEEPKAESLIDKIAEKIHAHD---SSSSDSEDDKGSASATIKSKIYRLFGRE 60
           M E H+HE      ES+++KI+EKIH HD   SSSSDS+DDK SAS  +K+KIYRLFGRE
Sbjct: 1   MAEEHKHE------ESIMEKISEKIHGHDDSSSSSSDSDDDKNSAS--LKTKIYRLFGRE 60

Query: 61  RPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALAVV 120
           +P+HK+FGGGKPADIFLWRNKKVSGGVLG ATV+WILFELLEY+ LTL  HI + ALAV+
Sbjct: 61  QPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVL 120

Query: 121 FLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLREIASGRDLKSFLSA 180
           FLWS+AS FI+KS  HIP+VHIPE  V ++AS LR+EINRG  VLR+IASGRDLK FL  
Sbjct: 121 FLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLV 180

Query: 181 IAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAVFD 240
           IAGLWVLS VGS  NFLTL+YI  +LLFT+PV YEKY+DKVD + EKAM E+KKQY  FD
Sbjct: 181 IAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFD 240

Query: 241 AKVL----SKIPRG 248
            KVL    SKIP+G
Sbjct: 241 VKVLSKVMSKIPKG 246

[Close]

BLAST of CmaCh02G014160 vs. TAIR 10
Match: AT1G64090.2 (Reticulan like protein B3 )

HSP 1 Score: 310.8 bits (795), Expect = 9.9e-85
Identity = 175/270 (64.81%), Postives = 204/270 (75.56%), Query Frame = 0


Query: 1   MTEHHEHEHEEPKAESLIDKIAEKIHAHD---SSSSDSEDDKGSASATIKSKIYRLFGRE 60
           M E H+HE      ES+++KI+EKIH HD   SSSSDS+DDK SAS  +K+KIYRLFGRE
Sbjct: 1   MAEEHKHE------ESIMEKISEKIHGHDDSSSSSSDSDDDKNSAS--LKTKIYRLFGRE 60

Query: 61  RPVHKVFGGGK----------------PADIFLWRNKKVSGGVLGGATVAWILFELLEYH 120
           +P+HK+FGGGK                 ADIFLWRNKKVSGGVLG ATV+WILFELLEY+
Sbjct: 61  QPLHKLFGGGKHSENQDINERFGLVFAAADIFLWRNKKVSGGVLGAATVSWILFELLEYN 120

Query: 121 FLTLICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAV 180
            LTL  HI + ALAV+FLWS+AS FI+KS  HIP+VHIPE  V ++AS LR+EINRG  V
Sbjct: 121 LLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTV 180

Query: 181 LREIASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAY 240
           LR+IASGRDLK FL  IAGLWVLS VGS  NFLTL+YI  +LLFT+PV YEKY+DKVD +
Sbjct: 181 LRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDF 240

Query: 241 AEKAMAELKKQYAVFDAKVL----SKIPRG 248
            EKAM E+KKQY  FD KVL    SKIP+G
Sbjct: 241 GEKAMREIKKQYVEFDVKVLSKVMSKIPKG 262

The following BLAST results are available for this feature:

BLAST of CmaCh02G014160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUT9	3.2e-96	66.91	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
Q9SUR3	3.7e-92	65.20	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
Q9FFS0	1.7e-89	66.03	Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1	[more]
Q9SH59	1.2e-87	69.29	Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1	[more]
O82352	3.2e-80	60.89	Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1	[more]

BLAST of CmaCh02G014160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11220.1	2.3e-97	66.91	VIRB2-interacting protein 2	[more]
AT4G23630.1	2.6e-93	65.20	VIRB2-interacting protein 1	[more]
AT5G41600.1	1.2e-90	66.03	VIRB2-interacting protein 3	[more]
AT1G64090.1	8.6e-89	69.29	Reticulan like protein B3	[more]
AT1G64090.2	9.9e-85	64.81	Reticulan like protein B3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 70..225 e-value: 7.4E-59 score: 198.2
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 69..255 score: 45.584362
None	No IPR available	PANTHER	PTHR10994:SF156	RETICULON-LIKE PROTEIN	coord: 6..254
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 6..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014160.1	CmaCh02G014160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane